Spo00538.1 (mRNA)

Overview
NameSpo00538.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionATP-dependent Clp protease proteolytic subunit (3.4.21.92)
Locationchr1 : 31484056 .. 31488608 (+)
Sequence length1596
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACCCTGTTAGTGAAGTCAATAAAAAAGAATGGTGGGAGAACGATAATAAGTCTCATAAATAAAATAACCCCATTGATTCGTTTACCCAATCCTTGAAAATCCTCCATTGTTTCTCAATACCCTTCGCTTCACTCTCAGCTGCAGTAGTAGCAGGAAGAAGAAGACGATGGAAATGAGCAGCTTAACTTTCACAACACCATCATCTTCGACAACAAAGCCACTCAGCTTCTTCAACCATGGCTTGAAACAATTGAAACCTTCAACCCCGTCATTTTTTTCTGGAACAAATTCATGGAATCAAAACAGAAGCAGAATCACCCATGTGAAGGCCTTAAAAGGGTCAATTGAACGCAATACCCTCTCTTCGAATTGGGAATTTTCAGCCACCGCTGCCCCCAGGTTGCCCAGATTTGAAGAACTTGATATTACCAACATGCTTCTTCGTCAGAGAATCATCTTTCTGGGTTCTCAAGTTAGTAACTTTTTCCCCTCGTTTAGTTTCAATTCCTTTTCCATTTCTTATCGGTTTATGAATCATTTGGCTTTGAAATTTTGTTGTGTTCGATGAATATTTAGGGGTTTTGTGAAATTATTCGACTCTTTTACATTGTTGTTGAAATTGTCGATTGAGTTTAGCTGGGATTAAGGTTGGATGTTGAAAATTTGGTTGGTTGATTAATTTTAGGGATTGCATATGGGTTCCTGTGATAAGCTTGTTATTGATGTTAATTATTGATTATTGATTTTCAGAGGACTAAGGCTCCGTTTGTTAAGGCGTAAAACGTTTTCATTGTAAAACGAATTTCCATGGAAAACAGTTTTCAAGGGAAAACACAATTCCAAACTAGTTTTCCTTTGTTTGGTAACTTAAAGGAAAATGGGAGAAAATGGTGAATATTGAGGGGAAGAAAGGAGATGGAGGTAAGGAGGAAAGAAGGAAAAGTGGTTTCCCTCCCTTTCAAATGGAAAAGGGTTTTCCATCTTTGAGAGAGTAATGGAAAATTATTTTACATCCCTTACCCAACCAAACAACGTAAAATGGTTAAAAAGGGGAAAATCGTTTTCCATGAAAACGTTTTACGCCCTACCAAACGGAGCCTAAGGGGGGAAATGTTGGGTAATTAGATTTGGAGTTCGCAACCACTAATGAAGGATTCTTTGAAAGATTAAAGGATTAGTATTCTTTTGTGGAAATTGAACAATTTGGTCTTATACATACTTGAAGAGTTGAAGGGTGTGGAGACTTGAAGGGTGTGGAGTGTGGAGTGTGGAGTGTGGAGTTGAAGGGTGTGGAGTGTGGAGTGTGGAGTGAATGATTGCTGTGTTCAAGGGGTTTTAATTGCTAATGGCAAGAGAAGCCTATATGAGCTTGGTTCTTCGTTAATTTTCTGGACACACTTTCAATGAGATTAGGACAAGAGGAATTCTTCTGAAACTTTGTAGTTTATTAAGTTAATTTTTGTTTTTGCTATAATGGTCTGCAGATTGATGACACTACAGCAGATTTTGTCATAAGCCAGCTCTTACTTTTAGACGCAGAAGACCCCAAGAAGGATATTAAGTTGTTTATCAACTCTCCTGGAGGATCAGTGACTGCAGGTTTGGCTTATTAACCATTTTAGCTTGTGTATCCTTCAATCATCTTCAATTTTTCGGATTGTTATAGTTCTACTTTTTGTGAGGCAGATTGTCAAATATGTTACGCTTACCAACTGATTCGAACCTTTTGCTACTGAGACGAGTTCTTCCGTGTCTGATAACTCTTTTTTCTTTCTACTTCAATACTTCCATAAGATTGTATCGTGAGAATGATTCGAAAACACGTTATACTTTACCATGTTCAGATGCTTGTCTCTAGATTTTGTTATACAGAAAACAAGCCTTTTATTGTTATTGTCTGTTCACTACTTCAATCTAGTATCAATTCCTGATTTAAGCAGAAAGGGAAATTCAGGTCAAAAGTCAAGAAGATTCCTCTTCTATAATGGAAAAGTGCCATTGGTTTTAGTTAACTTCTACAGCTGATCTATTCACTTCATTTGTAGGGATGGGAATTTATGACGCTATGAAACAGTGCAAGGCAGATGTATCTACCACTTGTATGGGATTAGCTGCGTCCATGGGAGCATTTCTTCTTGCTTCTGGTAGTAAAGGCAAGCGCTACTGCATGCCAAATTCAAGAGTGATGATCCATCAGCCACTTGGAACAGCTGGCGGCAAGGTAAATTCCGGCCTTCTATTTGTTTTAATACTTAATTATTCCAGATTTCCATGAAGGAATACTCCCCTTCTTGAATATGAAACTAGACTCTCGTTTATCCTTGTTCTCTATTGCGATCTGTCCTGAGCTCCAATATATTTTGCTCTTTTGTTTTGCATCTCGATCATCAACTCTTCTGTCTGAAAACTATAATCTTTTTCTGCTTTTGTAAAGGTTCAACCTTTTGTCATCATTTAGATCTTTGATAATTTGTAGTTATTTTGGAGTTATGGTTTAGGTTTCAGATGAATTGGTTTTGGCAAAATAAAATGATTAAGCTAGTGGTTTACTGGGTTTTTTTTTTCTTTCTGTTTTTGCTTGTAACTTACTTTCTGTCAAAGCATTAAGAATCATTTTGTTTCCAGCTAAAGGGAACTGAAGAGAATGTGATTATTGCGTACAGAATTGAACTTCATTGTGCTTCGTATATTGAATTGCCATTGTATATAACTGTTGCCACTATGATTTTATGAGGAACTGAAGACTTCTTTGAGAACTTTGTGGAACCAAACCCTTTTACTTCTTTTCCATCATTTTGCTCAAGTTCTTCAAATGATTGACTACTTCACCAGTTGACCTCCTCCACTACCTTAATTATGACACTTAAGTTTAGGCATTCATATCCTGGTTAATTTTGACTGACCATCCTCCTTAAACTGCAATTTTGTGTCCAACATAAATTGGCTTATTATTAAATTCTTATCCTATATAAATCTATTCAAACATTTTACTTTGTTTGATTTCTGATGAAATCTACATATATTATTCAGCTTTGCTACTATGAGTTGTCAACATTCAGCCTCTGCCATTAGTATGCTAATCAGCTGATGATGGTGGCAACACCAAGGCTTATTCAGGATACTTCTATATGCATCCCAAAACATGATCCCAAACAGATGTGACCCTCTTGAGATTTAGGTTAGCATGATAGCGGTCGTTATACACTTATACCCAACACCAGCTTACTCATGTACCAAATTCTAACACCGACACCTACATAATTCACGCATGCCTCGAAGACACCAAACACTCAGACCATTTAGGAGGCTGGATAACAATACCATGTTAATTGTCATTTATAATCCAATAAGAAGAGACTATCATTATCCTGTTTGCTTATTTCATATGTTGTCTACTTTTTGTTTACAAACTCAACATGGTCCTCTTGATGTACTCGTTTTCTCTTGCTTGCATGTTGTCGTGTTCCTATTCCATTATTCAACCTCTTATGCACTTATTATCAGGAGATCTGTTGTTATCTCTAATTTCAAAGCTAGCTTAATCATTCCGTCATTGTTTCTGTTGTAGATATTAATGCATACTAGTATTTTTTTTTGTCATGCGTGTTGATGATTACTTGTTATTATTTATAGGCAACAGACATGAGCATACGTATCAGAGAAATGGCGTACCACAAAGTCAAGCTCAACAAAATCATGTCCAGAATCACAGGAAAGCCAGAGGAGCAGGTTAGTTGTATGAAAATGCTCTAGCCAAATCACATCTAATGTAGCTTTCGTTAATATGCCTTTTTAATCTCCTTTTTTTTCTTACAGATTGAAATTGACACTGATCGTGACAATTTCATGAATCCATGGGAGGCAAAAGAATATGGAATAGTAGATGCAGTTATCGATGATGGTAAGGTGGGTTTGGTTGCACCCATCGGAGATACTGCCCCACCTCCAAAAACAAAGGTGTGGGATCAATGGAAGATCGAGGGTAGCCGCAAAGCCAGGAAGAATCTTCCATCCGAGAGCAAGATGTCACAGACTGGATATGCTGACGAGAACAAGGGTACTCAACTAGATAAGGAAACCCCAACTTCAGTATAAGGGCCATCACCCACATTTCTCCAACCAGTATAGATTTACACTGTCTTTCCAAATTGTTTTACTCACGTAGAAGTAATTTGATATATGTGTAACCTTGCATTTTTTATGATTATTTTGTGGTAGTTGTTCCATTGCTATTGGTATTTTTTTTTTCTTTTTTTTTCTTCCATCGTCTTGACTCTTGACCATCAAAACAAACCCAGTTAAACTTTGATCAACATGTATCTTTTGTATAAAAGCAACTCCAATGATCTAGAGACTTGCTTGCAACTTTTAAAAGTTTTAAGCTACTAGCTTGATCATTGGAGTGAAAATGACAAATTAGCTTGGCCAAGCAAATTAGCTTGGCCTTGCTTGACCAAGCTGATTTGCTTGACAAAAGAGTTATTAATGGTTGATTGACTACTGACAAGTGGGACAAAAATTAAATAACAAGCTAGTAGGTAACCATTGGAT

mRNA sequence

CAACCCTGTTAGTGAAGTCAATAAAAAAGAATGGTGGGAGAACGATAATAAGTCTCATAAATAAAATAACCCCATTGATTCGTTTACCCAATCCTTGAAAATCCTCCATTGTTTCTCAATACCCTTCGCTTCACTCTCAGCTGCAGTAGTAGCAGGAAGAAGAAGACGATGGAAATGAGCAGCTTAACTTTCACAACACCATCATCTTCGACAACAAAGCCACTCAGCTTCTTCAACCATGGCTTGAAACAATTGAAACCTTCAACCCCGTCATTTTTTTCTGGAACAAATTCATGGAATCAAAACAGAAGCAGAATCACCCATGTGAAGGCCTTAAAAGGGTCAATTGAACGCAATACCCTCTCTTCGAATTGGGAATTTTCAGCCACCGCTGCCCCCAGGTTGCCCAGATTTGAAGAACTTGATATTACCAACATGCTTCTTCGTCAGAGAATCATCTTTCTGGGTTCTCAAATTGATGACACTACAGCAGATTTTGTCATAAGCCAGCTCTTACTTTTAGACGCAGAAGACCCCAAGAAGGATATTAAGTTGTTTATCAACTCTCCTGGAGGATCAGTGACTGCAGGGATGGGAATTTATGACGCTATGAAACAGTGCAAGGCAGATGTATCTACCACTTGTATGGGATTAGCTGCGTCCATGGGAGCATTTCTTCTTGCTTCTGGTAGTAAAGGCAAGCGCTACTGCATGCCAAATTCAAGAGTGATGATCCATCAGCCACTTGGAACAGCTGGCGGCAAGGCAACAGACATGAGCATACGTATCAGAGAAATGGCGTACCACAAAGTCAAGCTCAACAAAATCATGTCCAGAATCACAGGAAAGCCAGAGGAGCAGATTGAAATTGACACTGATCGTGACAATTTCATGAATCCATGGGAGGCAAAAGAATATGGAATAGTAGATGCAGTTATCGATGATGGTAAGGTGGGTTTGGTTGCACCCATCGGAGATACTGCCCCACCTCCAAAAACAAAGGTGTGGGATCAATGGAAGATCGAGGGTAGCCGCAAAGCCAGGAAGAATCTTCCATCCGAGAGCAAGATGTCACAGACTGGATATGCTGACGAGAACAAGGGTACTCAACTAGATAAGGAAACCCCAACTTCAGTATAAGGGCCATCACCCACATTTCTCCAACCAGTATAGATTTACACTGTCTTTCCAAATTGTTTTACTCACGTAGAAGTAATTTGATATATGTGTAACCTTGCATTTTTTATGATTATTTTGTGGTAGTTGTTCCATTGCTATTGGTATTTTTTTTTTCTTTTTTTTTCTTCCATCGTCTTGACTCTTGACCATCAAAACAAACCCAGTTAAACTTTGATCAACATGTATCTTTTGTATAAAAGCAACTCCAATGATCTAGAGACTTGCTTGCAACTTTTAAAAGTTTTAAGCTACTAGCTTGATCATTGGAGTGAAAATGACAAATTAGCTTGGCCAAGCAAATTAGCTTGGCCTTGCTTGACCAAGCTGATTTGCTTGACAAAAGAGTTATTAATGGTTGATTGACTACTGACAAGTGGGACAAAAATTAAATAACAAGCTAGTAGGTAACCATTGGAT

Coding sequence (CDS)

ATGGAAATGAGCAGCTTAACTTTCACAACACCATCATCTTCGACAACAAAGCCACTCAGCTTCTTCAACCATGGCTTGAAACAATTGAAACCTTCAACCCCGTCATTTTTTTCTGGAACAAATTCATGGAATCAAAACAGAAGCAGAATCACCCATGTGAAGGCCTTAAAAGGGTCAATTGAACGCAATACCCTCTCTTCGAATTGGGAATTTTCAGCCACCGCTGCCCCCAGGTTGCCCAGATTTGAAGAACTTGATATTACCAACATGCTTCTTCGTCAGAGAATCATCTTTCTGGGTTCTCAAATTGATGACACTACAGCAGATTTTGTCATAAGCCAGCTCTTACTTTTAGACGCAGAAGACCCCAAGAAGGATATTAAGTTGTTTATCAACTCTCCTGGAGGATCAGTGACTGCAGGGATGGGAATTTATGACGCTATGAAACAGTGCAAGGCAGATGTATCTACCACTTGTATGGGATTAGCTGCGTCCATGGGAGCATTTCTTCTTGCTTCTGGTAGTAAAGGCAAGCGCTACTGCATGCCAAATTCAAGAGTGATGATCCATCAGCCACTTGGAACAGCTGGCGGCAAGGCAACAGACATGAGCATACGTATCAGAGAAATGGCGTACCACAAAGTCAAGCTCAACAAAATCATGTCCAGAATCACAGGAAAGCCAGAGGAGCAGATTGAAATTGACACTGATCGTGACAATTTCATGAATCCATGGGAGGCAAAAGAATATGGAATAGTAGATGCAGTTATCGATGATGGTAAGGTGGGTTTGGTTGCACCCATCGGAGATACTGCCCCACCTCCAAAAACAAAGGTGTGGGATCAATGGAAGATCGAGGGTAGCCGCAAAGCCAGGAAGAATCTTCCATCCGAGAGCAAGATGTCACAGACTGGATATGCTGACGAGAACAAGGGTACTCAACTAGATAAGGAAACCCCAACTTCAGTATAA

Protein sequence

MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTNSWNQNRSRITHVKALKGSIERNTLSSNWEFSATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDAEDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRYCMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDNFMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNLPSESKMSQTGYADENKGTQLDKETPTSV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo00538Spo00538gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo00538.1Spo00538.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00538.1.exon.1Spo00538.1.exon.1exon
Spo00538.1.exon.2Spo00538.1.exon.2exon
Spo00538.1.exon.3Spo00538.1.exon.3exon
Spo00538.1.exon.4Spo00538.1.exon.4exon
Spo00538.1.exon.5Spo00538.1.exon.5exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00538.1.utr5p.1Spo00538.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00538.1.CDS.1Spo00538.1.CDS.1CDS
Spo00538.1.CDS.2Spo00538.1.CDS.2CDS
Spo00538.1.CDS.3Spo00538.1.CDS.3CDS
Spo00538.1.CDS.4Spo00538.1.CDS.4CDS
Spo00538.1.CDS.5Spo00538.1.CDS.5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00538.1.utr3p.1Spo00538.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo00538.1 vs. NCBI nr
Match: gi|902223776|gb|KNA19573.1| (hypothetical protein SOVF_060310 [Spinacia oleracea])

HSP 1 Score: 641.3 bits (1653), Expect = 8.800e-181
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 1 

		  

Query: 1   MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTNSWNQNRSRITHVKALKGSI 60
           MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTNSWNQNRSRITHVKALKGSI
Sbjct: 1   MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTNSWNQNRSRITHVKALKGSI 60

Query: 61  ERNTLSSNWEFSATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDA 120
           ERNTLSSNWEFSATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDA
Sbjct: 61  ERNTLSSNWEFSATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDA 120

Query: 121 EDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRY 180
           EDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRY
Sbjct: 121 EDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRY 180

Query: 181 CMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDN 240
           CMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDN
Sbjct: 181 CMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDN 240

Query: 241 FMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNLPSESK 300
           FMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNLPSESK
Sbjct: 241 FMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNLPSESK 300

Query: 301 MSQTGYADENKGTQLDKETPTSV 324
           MSQTGYADENKGTQLDKETPTSV
Sbjct: 301 MSQTGYADENKGTQLDKETPTSV 323
[Close]
BLAST of Spo00538.1 vs. NCBI nr
Match: gi|731315967|ref|XP_010693678.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 520.4 bits (1339), Expect = 2.300e-144
Identity = 270/330 (81.82%), Postives = 289/330 (87.58%), Query Frame = 1 

		  

Query: 1   MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTN---SWNQNRSRITHVKALK 60
           MEMSSLTFTTPSSST  PLSFFNH L  LK   P+  SGTN   S NQ+R+R+  VK+  
Sbjct: 1   MEMSSLTFTTPSSST--PLSFFNHSLNHLK--FPATISGTNTLKSLNQSRNRLIQVKSSN 60

Query: 61  GSIERNTLSSNWEFSATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLL 120
           GS+ER TLSSNWE   T  PRLPRFEELD TNMLLRQRIIFLGSQIDDTTADFVISQLLL
Sbjct: 61  GSVERETLSSNWEILGTTTPRLPRFEELDTTNMLLRQRIIFLGSQIDDTTADFVISQLLL 120

Query: 121 LDAEDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKG 180
           LDAED KKDIKLFINSPGGSVTAGMGIYDAMKQCKADVST C GLAASMGAFLLASGSKG
Sbjct: 121 LDAEDSKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTICFGLAASMGAFLLASGSKG 180

Query: 181 KRYCMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTD 240
           KRYCMPNSRVMIHQPLGTAGGKAT+MSIRIREM+YHK+KLNKI+SRITGKPEEQIEIDTD
Sbjct: 181 KRYCMPNSRVMIHQPLGTAGGKATEMSIRIREMSYHKIKLNKILSRITGKPEEQIEIDTD 240

Query: 241 RDNFMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNLPS 300
           RDNF+NPWEAKEYG++DAVIDDGK GLVAPIGDTA PPKTKVWD WKIEGSRKARKNLPS
Sbjct: 241 RDNFLNPWEAKEYGLIDAVIDDGKPGLVAPIGDTAAPPKTKVWDLWKIEGSRKARKNLPS 300

Query: 301 ESKMSQTGYA----DENKGTQLDKETPTSV 324
           E KM + GYA    +E+KG+Q + E+P SV
Sbjct: 301 EHKMLRNGYAGSQGEEDKGSQAENESPNSV 326
[Close]
BLAST of Spo00538.1 vs. NCBI nr
Match: gi|659114541|ref|XP_008457103.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo])

HSP 1 Score: 443.4 bits (1139), Expect = 3.500e-121
Identity = 232/337 (68.84%), Postives = 265/337 (78.64%), Query Frame = 1 

		  

Query: 6   LTFTTPSSSTTKPLSFFNHGL---KQLKPSTPSFFSGTNSWNQNRSRITHVK-------A 65
           L+FT   S +   L  F+HGL     +  STPS  S   ++  N  RI +         +
Sbjct: 3   LSFTHAPSPSPYGLKRFDHGLHHSSHVPISTPSNHSHGRNFTSNNFRIRNCSVPVLNHPS 62

Query: 66  LKGSIERNTLSSNWE----FSATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFV 125
           L  S  R TLSSNW+    +SA++AP LPRFEELD TNMLLRQRIIFLGSQ+DD TADF+
Sbjct: 63  LSSSSLRRTLSSNWDVLSNYSASSAPSLPRFEELDTTNMLLRQRIIFLGSQVDDVTADFI 122

Query: 126 ISQLLLLDAEDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLL 185
           ISQLL LDAEDP KDIKLFINSPGGSVTAGMGIYDAMK CKADVST C+GLAASMGAFLL
Sbjct: 123 ISQLLFLDAEDPTKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTICLGLAASMGAFLL 182

Query: 186 ASGSKGKRYCMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQ 245
           ASGSKGKR+CMPN RVMIHQPLGTAGGKAT+MSIRIREMAYHK+KLNKI SRITGKP EQ
Sbjct: 183 ASGSKGKRFCMPNGRVMIHQPLGTAGGKATEMSIRIREMAYHKIKLNKIFSRITGKPLEQ 242

Query: 246 IEIDTDRDNFMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKA 305
           IE+DTDRDNFMNPWEAKEYG++D VIDDGK GL+API +  PPPKT+VWD WK+EGSRKA
Sbjct: 243 IELDTDRDNFMNPWEAKEYGLIDEVIDDGKPGLIAPIAEATPPPKTRVWDLWKVEGSRKA 302

Query: 306 RKNLPSESKMSQTGY-----ADENKGTQLDKETPTSV 324
           +KNLPSESK+ + GY     +DE +G+Q + E P+ V
Sbjct: 303 KKNLPSESKILKNGYQGGEGSDEERGSQQETEEPSPV 339
[Close]
BLAST of Spo00538.1 vs. NCBI nr
Match: gi|848863650|ref|XP_012832588.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Erythranthe guttata])

HSP 1 Score: 440.7 bits (1132), Expect = 2.300e-120
Identity = 232/326 (71.17%), Postives = 258/326 (79.14%), Query Frame = 1 

		  

Query: 1   MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSF--FSGTNSWNQNRSRITHVKALKG 60
           ME   LTFT  +SS+  P +          P   SF  FS T+  +  +     +     
Sbjct: 1   MEGGILTFT--ASSSAHPAALLRRSATIFTPPRDSFRQFSTTSKISNGKKSSRKIGNFSV 60

Query: 61  SIERNTLSSNWEFSATAAPR-LPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLL 120
               N+LSSNWE S  AAP  LPRFEELD TNMLLRQRIIFLGSQIDD TADFVISQLLL
Sbjct: 61  KASNNSLSSNWEVSNYAAPAWLPRFEELDTTNMLLRQRIIFLGSQIDDVTADFVISQLLL 120

Query: 121 LDAEDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKG 180
           LD+E+PKKDIKLFINSPGGSVTAGMGIYDAMK CKADVST CMGLAASMGAFLLASG+KG
Sbjct: 121 LDSENPKKDIKLFINSPGGSVTAGMGIYDAMKMCKADVSTICMGLAASMGAFLLASGTKG 180

Query: 181 KRYCMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTD 240
           KR+CMPN+RVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKI+SR+TGKPEEQIE+DTD
Sbjct: 181 KRFCMPNARVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKILSRVTGKPEEQIELDTD 240

Query: 241 RDNFMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNLPS 300
           RDNFMN WEAK+YG++D VIDDGK GLVAPIGD + PPKT+VWDQWKIEGSRKA+KNLPS
Sbjct: 241 RDNFMNAWEAKDYGLIDVVIDDGKPGLVAPIGDKSAPPKTRVWDQWKIEGSRKAKKNLPS 300

Query: 301 ESKMSQTGYADENKGTQLDKETPTSV 324
           E KM   G   +N GT+  +E PT +
Sbjct: 301 EDKMLLNG---QNGGTEQKEEAPTPI 321
[Close]
BLAST of Spo00538.1 vs. NCBI nr
Match: gi|356569022|ref|XP_003552706.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic-like [Glycine max])

HSP 1 Score: 435.3 bits (1118), Expect = 9.600e-119
Identity = 220/273 (80.59%), Postives = 240/273 (87.91%), Query Frame = 1 

		  

Query: 62  RNTLSSNW-----EFSA-TAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQL 121
           R TLSSNW     +FSA TA+P LPRFEELD TNMLLRQRIIFLGSQ+DD TADF+ISQL
Sbjct: 50  RQTLSSNWLVSPHDFSASTASPWLPRFEELDATNMLLRQRIIFLGSQVDDMTADFIISQL 109

Query: 122 LLLDAEDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGS 181
           L LDAED KKDIKLFINSPGGSVTAGMGIYDAMK CKADVST C+GLAASMGAF+LASG+
Sbjct: 110 LFLDAEDSKKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFILASGT 169

Query: 182 KGKRYCMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEID 241
           KGKRYCMPNSRVMIHQPLGTAGGKAT+MSIRIREMAYHK+K+NKI+SRITGKPEEQIE+D
Sbjct: 170 KGKRYCMPNSRVMIHQPLGTAGGKATEMSIRIREMAYHKIKINKILSRITGKPEEQIELD 229

Query: 242 TDRDNFMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNL 301
           TDRDNFMNPWEAKEYG+VD VIDDGK GLVAPIGD +PPPKT+VWDQWKIEGSRKA+KNL
Sbjct: 230 TDRDNFMNPWEAKEYGLVDGVIDDGKPGLVAPIGDASPPPKTRVWDQWKIEGSRKAKKNL 289

Query: 302 PSESKMSQTGY-----ADENKGTQLDKETPTSV 324
           PSE K  Q        +D +KGT  + ETP +V
Sbjct: 290 PSEHKFLQNASKGSQGSDGDKGTVQEGETPVAV 322
[Close]
BLAST of Spo00538.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJB1_SPIOL (ATP-dependent Clp protease proteolytic subunit OS=Spinacia oleracea GN=SOVF_060310 PE=3 SV=1)

HSP 1 Score: 641.3 bits (1653), Expect = 6.100e-181
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 1 

		  

Query: 1   MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTNSWNQNRSRITHVKALKGSI 60
           MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTNSWNQNRSRITHVKALKGSI
Sbjct: 1   MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTNSWNQNRSRITHVKALKGSI 60

Query: 61  ERNTLSSNWEFSATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDA 120
           ERNTLSSNWEFSATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDA
Sbjct: 61  ERNTLSSNWEFSATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDA 120

Query: 121 EDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRY 180
           EDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRY
Sbjct: 121 EDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRY 180

Query: 181 CMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDN 240
           CMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDN
Sbjct: 181 CMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDN 240

Query: 241 FMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNLPSESK 300
           FMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNLPSESK
Sbjct: 241 FMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNLPSESK 300

Query: 301 MSQTGYADENKGTQLDKETPTSV 324
           MSQTGYADENKGTQLDKETPTSV
Sbjct: 301 MSQTGYADENKGTQLDKETPTSV 323
[Close]
BLAST of Spo00538.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CYD4_BETVU (ATP-dependent Clp protease proteolytic subunit OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g027520 PE=3 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 1.600e-144
Identity = 270/330 (81.82%), Postives = 289/330 (87.58%), Query Frame = 1 

		  

Query: 1   MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTN---SWNQNRSRITHVKALK 60
           MEMSSLTFTTPSSST  PLSFFNH L  LK   P+  SGTN   S NQ+R+R+  VK+  
Sbjct: 1   MEMSSLTFTTPSSST--PLSFFNHSLNHLK--FPATISGTNTLKSLNQSRNRLIQVKSSN 60

Query: 61  GSIERNTLSSNWEFSATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLL 120
           GS+ER TLSSNWE   T  PRLPRFEELD TNMLLRQRIIFLGSQIDDTTADFVISQLLL
Sbjct: 61  GSVERETLSSNWEILGTTTPRLPRFEELDTTNMLLRQRIIFLGSQIDDTTADFVISQLLL 120

Query: 121 LDAEDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKG 180
           LDAED KKDIKLFINSPGGSVTAGMGIYDAMKQCKADVST C GLAASMGAFLLASGSKG
Sbjct: 121 LDAEDSKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTICFGLAASMGAFLLASGSKG 180

Query: 181 KRYCMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTD 240
           KRYCMPNSRVMIHQPLGTAGGKAT+MSIRIREM+YHK+KLNKI+SRITGKPEEQIEIDTD
Sbjct: 181 KRYCMPNSRVMIHQPLGTAGGKATEMSIRIREMSYHKIKLNKILSRITGKPEEQIEIDTD 240

Query: 241 RDNFMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNLPS 300
           RDNF+NPWEAKEYG++DAVIDDGK GLVAPIGDTA PPKTKVWD WKIEGSRKARKNLPS
Sbjct: 241 RDNFLNPWEAKEYGLIDAVIDDGKPGLVAPIGDTAAPPKTKVWDLWKIEGSRKARKNLPS 300

Query: 301 ESKMSQTGYA----DENKGTQLDKETPTSV 324
           E KM + GYA    +E+KG+Q + E+P SV
Sbjct: 301 EHKMLRNGYAGSQGEEDKGSQAENESPNSV 326
[Close]
BLAST of Spo00538.1 vs. UniProtKB/TrEMBL
Match: A0A022RML7_ERYGU (ATP-dependent Clp protease proteolytic subunit OS=Erythranthe guttata GN=MIMGU_mgv1a010129mg PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 1.600e-120
Identity = 232/326 (71.17%), Postives = 258/326 (79.14%), Query Frame = 1 

		  

Query: 1   MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSF--FSGTNSWNQNRSRITHVKALKG 60
           ME   LTFT  +SS+  P +          P   SF  FS T+  +  +     +     
Sbjct: 1   MEGGILTFT--ASSSAHPAALLRRSATIFTPPRDSFRQFSTTSKISNGKKSSRKIGNFSV 60

Query: 61  SIERNTLSSNWEFSATAAPR-LPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLL 120
               N+LSSNWE S  AAP  LPRFEELD TNMLLRQRIIFLGSQIDD TADFVISQLLL
Sbjct: 61  KASNNSLSSNWEVSNYAAPAWLPRFEELDTTNMLLRQRIIFLGSQIDDVTADFVISQLLL 120

Query: 121 LDAEDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKG 180
           LD+E+PKKDIKLFINSPGGSVTAGMGIYDAMK CKADVST CMGLAASMGAFLLASG+KG
Sbjct: 121 LDSENPKKDIKLFINSPGGSVTAGMGIYDAMKMCKADVSTICMGLAASMGAFLLASGTKG 180

Query: 181 KRYCMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTD 240
           KR+CMPN+RVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKI+SR+TGKPEEQIE+DTD
Sbjct: 181 KRFCMPNARVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKILSRVTGKPEEQIELDTD 240

Query: 241 RDNFMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNLPS 300
           RDNFMN WEAK+YG++D VIDDGK GLVAPIGD + PPKT+VWDQWKIEGSRKA+KNLPS
Sbjct: 241 RDNFMNAWEAKDYGLIDVVIDDGKPGLVAPIGDKSAPPKTRVWDQWKIEGSRKAKKNLPS 300

Query: 301 ESKMSQTGYADENKGTQLDKETPTSV 324
           E KM   G   +N GT+  +E PT +
Sbjct: 301 EDKMLLNG---QNGGTEQKEEAPTPI 321
[Close]
BLAST of Spo00538.1 vs. UniProtKB/TrEMBL
Match: A0A0B2PXR4_GLYSO (ATP-dependent Clp protease proteolytic subunit OS=Glycine soja GN=glysoja_016199 PE=3 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 6.700e-119
Identity = 220/273 (80.59%), Postives = 240/273 (87.91%), Query Frame = 1 

		  

Query: 62  RNTLSSNW-----EFSA-TAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQL 121
           R TLSSNW     +FSA TA+P LPRFEELD TNMLLRQRIIFLGSQ+DD TADF+ISQL
Sbjct: 50  RQTLSSNWLVSPHDFSASTASPWLPRFEELDATNMLLRQRIIFLGSQVDDMTADFIISQL 109

Query: 122 LLLDAEDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGS 181
           L LDAED KKDIKLFINSPGGSVTAGMGIYDAMK CKADVST C+GLAASMGAF+LASG+
Sbjct: 110 LFLDAEDSKKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFILASGT 169

Query: 182 KGKRYCMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEID 241
           KGKRYCMPNSRVMIHQPLGTAGGKAT+MSIRIREMAYHK+K+NKI+SRITGKPEEQIE+D
Sbjct: 170 KGKRYCMPNSRVMIHQPLGTAGGKATEMSIRIREMAYHKIKINKILSRITGKPEEQIELD 229

Query: 242 TDRDNFMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNL 301
           TDRDNFMNPWEAKEYG+VD VIDDGK GLVAPIGD +PPPKT+VWDQWKIEGSRKA+KNL
Sbjct: 230 TDRDNFMNPWEAKEYGLVDGVIDDGKPGLVAPIGDASPPPKTRVWDQWKIEGSRKAKKNL 289

Query: 302 PSESKMSQTGY-----ADENKGTQLDKETPTSV 324
           PSE K  Q        +D +KGT  + ETP +V
Sbjct: 290 PSEHKFLQNASKGSQGSDGDKGTVQEGETPVAV 322
[Close]
BLAST of Spo00538.1 vs. UniProtKB/TrEMBL
Match: I1N579_SOYBN (ATP-dependent Clp protease proteolytic subunit OS=Glycine max GN=GLYMA_18G291900 PE=3 SV=2)

HSP 1 Score: 435.3 bits (1118), Expect = 6.700e-119
Identity = 220/273 (80.59%), Postives = 240/273 (87.91%), Query Frame = 1 

		  

Query: 62  RNTLSSNW-----EFSA-TAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQL 121
           R TLSSNW     +FSA TA+P LPRFEELD TNMLLRQRIIFLGSQ+DD TADF+ISQL
Sbjct: 50  RQTLSSNWLVSPHDFSASTASPWLPRFEELDATNMLLRQRIIFLGSQVDDMTADFIISQL 109

Query: 122 LLLDAEDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGS 181
           L LDAED KKDIKLFINSPGGSVTAGMGIYDAMK CKADVST C+GLAASMGAF+LASG+
Sbjct: 110 LFLDAEDSKKDIKLFINSPGGSVTAGMGIYDAMKLCKADVSTVCLGLAASMGAFILASGT 169

Query: 182 KGKRYCMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEID 241
           KGKRYCMPNSRVMIHQPLGTAGGKAT+MSIRIREMAYHK+K+NKI+SRITGKPEEQIE+D
Sbjct: 170 KGKRYCMPNSRVMIHQPLGTAGGKATEMSIRIREMAYHKIKINKILSRITGKPEEQIELD 229

Query: 242 TDRDNFMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARKNL 301
           TDRDNFMNPWEAKEYG+VD VIDDGK GLVAPIGD +PPPKT+VWDQWKIEGSRKA+KNL
Sbjct: 230 TDRDNFMNPWEAKEYGLVDGVIDDGKPGLVAPIGDASPPPKTRVWDQWKIEGSRKAKKNL 289

Query: 302 PSESKMSQTGY-----ADENKGTQLDKETPTSV 324
           PSE K  Q        +D +KGT  + ETP +V
Sbjct: 290 PSEHKFLQNASKGSQGSDGDKGTVQEGETPVAV 322
[Close]
BLAST of Spo00538.1 vs. ExPASy Swiss-Prot
Match: CLPP3_ARATH (ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana GN=CLPP3 PE=1 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 2.100e-113
Identity = 216/314 (68.79%), Postives = 241/314 (76.75%), Query Frame = 1 

		  

Query: 1   MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTNSWNQNRSRITHVKALKGSI 60
           MEMS       SSST+ P+   N G     P        T+     RS ++  K      
Sbjct: 1   MEMS---LRLASSSTSNPICLLNPGKNLNFPIRNHRIPKTSKPFCVRSSMSLSKP----- 60

Query: 61  ERNTLSSNWEFS-------ATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVIS 120
            R TLSSNW+ S       A +  RLP FEELD TNMLLRQRI+FLGSQ+DD TAD VIS
Sbjct: 61  PRQTLSSNWDVSSFSIDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVIS 120

Query: 121 QLLLLDAEDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLAS 180
           QLLLLDAED ++DI LFINSPGGS+TAGMGIYDAMKQCKADVST C+GLAASMGAFLLAS
Sbjct: 121 QLLLLDAEDSERDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLAS 180

Query: 181 GSKGKRYCMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIE 240
           GSKGKRYCMPNS+VMIHQPLGTAGGKAT+MSIRIREM YHK+KLNKI SRITGKPE +IE
Sbjct: 181 GSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIE 240

Query: 241 IDTDRDNFMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARK 300
            DTDRDNF+NPWEAKEYG++DAVIDDGK GL+APIGD  PPPKTKVWD WK+EG++K   
Sbjct: 241 SDTDRDNFLNPWEAKEYGLIDAVIDDGKPGLIAPIGDGTPPPKTKVWDLWKVEGTKKDNT 300

Query: 301 NLPSESKMSQTGYA 308
           NLPSE  M+Q GYA
Sbjct: 301 NLPSERSMTQNGYA 306
[Close]
BLAST of Spo00538.1 vs. ExPASy Swiss-Prot
Match: CLPP1_NOSS1 (ATP-dependent Clp protease proteolytic subunit 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 4.700e-57
Identity = 108/178 (60.67%), Postives = 140/178 (78.65%), Query Frame = 1 

		  

Query: 86  DITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDAEDPKKDIKLFINSPGGSVTAGMGIY 145
           DI + LLR+RI+FLG Q+D   A+ +++QLL LDAEDP+KDI L+INSPGGSVTAGMGI+
Sbjct: 18  DIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77

Query: 146 DAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRYCMPNSRVMIHQPLGTAGGKATDMSI 205
           D MK  + DV T C GLAASMGAFLL++G+KGKR  +P+SR+MIHQPLG A G+ATD+ I
Sbjct: 78  DTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137

Query: 206 RIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDNFMNPWEAKEYGIVDAVIDDGKVG 264
           + RE+ YHK +LN  ++  TG+P E+I  DT+RD FM+P EAK+YG++D VID    G
Sbjct: 138 QAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEAKDYGLIDQVIDRHAAG 195
[Close]
BLAST of Spo00538.1 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 8.000e-57
Identity = 104/172 (60.47%), Postives = 140/172 (81.40%), Query Frame = 1 

		  

Query: 86  DITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDAEDPKKDIKLFINSPGGSVTAGMGIY 145
           DI + LLR+RI+FLG+ +DD  AD +++QLL L+AEDP+KDI+L+INSPGGSVTAGM IY
Sbjct: 53  DIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIY 112

Query: 146 DAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRYCMPNSRVMIHQPLGTAGGKATDMSI 205
           D M+Q   DV+T C GLAASMGAFLL+ G++GKR  +P++R+MIHQPLG A G+A D+ I
Sbjct: 113 DTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEI 172

Query: 206 RIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDNFMNPWEAKEYGIVDAVI 258
           + RE+ YHK  LN ++++ TG+P E+IE+DTDRD FM+P EAK YG++D V+
Sbjct: 173 QAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224
[Close]
BLAST of Spo00538.1 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 8.000e-57
Identity = 104/172 (60.47%), Postives = 140/172 (81.40%), Query Frame = 1 

		  

Query: 86  DITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDAEDPKKDIKLFINSPGGSVTAGMGIY 145
           DI + LLR+RI+FLG+ +DD  AD +++QLL L+AEDP+KDI+L+INSPGGSVTAGM IY
Sbjct: 53  DIYSRLLRERIVFLGTGVDDAVADSIVAQLLFLEAEDPEKDIQLYINSPGGSVTAGMAIY 112

Query: 146 DAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRYCMPNSRVMIHQPLGTAGGKATDMSI 205
           D M+Q   DV+T C GLAASMGAFLL+ G++GKR  +P++R+MIHQPLG A G+A D+ I
Sbjct: 113 DTMQQVAPDVATICFGLAASMGAFLLSGGAQGKRMALPSARIMIHQPLGGAQGQAVDIEI 172

Query: 206 RIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDNFMNPWEAKEYGIVDAVI 258
           + RE+ YHK  LN ++++ TG+P E+IE+DTDRD FM+P EAK YG++D V+
Sbjct: 173 QAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVL 224
[Close]
BLAST of Spo00538.1 vs. ExPASy Swiss-Prot
Match: CLPP1_ANAVT (ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 8.000e-57
Identity = 108/178 (60.67%), Postives = 140/178 (78.65%), Query Frame = 1 

		  

Query: 86  DITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDAEDPKKDIKLFINSPGGSVTAGMGIY 145
           DI + LLR+RIIFLG Q+D   A+ +++QLL LDAEDP+KDI L+INSPGGSVTAGMGI+
Sbjct: 18  DIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77

Query: 146 DAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRYCMPNSRVMIHQPLGTAGGKATDMSI 205
           D MK  + DV T C GLAASMGAFLL++G+KGKR  +P+SR+MIHQPLG A G+ATD+ I
Sbjct: 78  DTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSLPHSRIMIHQPLGGAQGQATDIEI 137

Query: 206 RIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDNFMNPWEAKEYGIVDAVIDDGKVG 264
           + RE+ YHK +LN  ++  TG+P E+I  DT+RD FM+P EA++YG++D VID    G
Sbjct: 138 QAREILYHKRRLNDYLAEHTGQPIERIAEDTERDFFMSPDEARDYGLIDQVIDRHAAG 195
[Close]
BLAST of Spo00538.1 vs. TAIR (Arabidopsis)
Match: AT1G66670.1 (CLP protease proteolytic subunit 3)

HSP 1 Score: 410.2 bits (1053), Expect = 1.200e-114
Identity = 216/314 (68.79%), Postives = 241/314 (76.75%), Query Frame = 1 

		  

Query: 1   MEMSSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTNSWNQNRSRITHVKALKGSI 60
           MEMS       SSST+ P+   N G     P        T+     RS ++  K      
Sbjct: 1   MEMS---LRLASSSTSNPICLLNPGKNLNFPIRNHRIPKTSKPFCVRSSMSLSKP----- 60

Query: 61  ERNTLSSNWEFS-------ATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVIS 120
            R TLSSNW+ S       A +  RLP FEELD TNMLLRQRI+FLGSQ+DD TAD VIS
Sbjct: 61  PRQTLSSNWDVSSFSIDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQVDDMTADLVIS 120

Query: 121 QLLLLDAEDPKKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLAS 180
           QLLLLDAED ++DI LFINSPGGS+TAGMGIYDAMKQCKADVST C+GLAASMGAFLLAS
Sbjct: 121 QLLLLDAEDSERDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMGAFLLAS 180

Query: 181 GSKGKRYCMPNSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIE 240
           GSKGKRYCMPNS+VMIHQPLGTAGGKAT+MSIRIREM YHK+KLNKI SRITGKPE +IE
Sbjct: 181 GSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGKPESEIE 240

Query: 241 IDTDRDNFMNPWEAKEYGIVDAVIDDGKVGLVAPIGDTAPPPKTKVWDQWKIEGSRKARK 300
            DTDRDNF+NPWEAKEYG++DAVIDDGK GL+APIGD  PPPKTKVWD WK+EG++K   
Sbjct: 241 SDTDRDNFLNPWEAKEYGLIDAVIDDGKPGLIAPIGDGTPPPKTKVWDLWKVEGTKKDNT 300

Query: 301 NLPSESKMSQTGYA 308
           NLPSE  M+Q GYA
Sbjct: 301 NLPSERSMTQNGYA 306
[Close]
BLAST of Spo00538.1 vs. TAIR (Arabidopsis)
Match: AT5G45390.1 (CLP protease P4)

HSP 1 Score: 206.8 bits (525), Expect = 2.000e-53
Identity = 114/271 (42.07%), Postives = 165/271 (60.89%), Query Frame = 1 

		  

Query: 4   SSLTFTTPSSSTTKPLSFFNHGLKQLKPSTPSFFSGTNSWNQNRSRITHVKALKGSIERN 63
           SS +F  P++   KP    +  L+   PS   F + +   +Q     T   A++G+    
Sbjct: 26  SSSSFPKPNNLYLKPTKLISPPLRTTSPSPLRFANASIEMSQ-----TQESAIRGA---- 85

Query: 64  TLSSNWEFSATAAPRLPRFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDAEDP 123
                               E D+  +LLR+RI+FLGS IDD  AD ++SQLLLLDA+DP
Sbjct: 86  --------------------ESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDP 145

Query: 124 KKDIKLFINSPGGSVTAGMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRYCMP 183
           KKDIKLFINSPGGS++A M IYD ++  +ADVST  +G+AAS  + +L +G+KGKR+ MP
Sbjct: 146 KKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGAGTKGKRFAMP 205

Query: 184 NSRVMIHQPLGTAGGKATDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDNFMN 243
           N+R+MIHQPLG A G+A D+ I+ +E+ ++K  +  I++  T +  EQ+  D DRD +M+
Sbjct: 206 NTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTSRSFEQVLKDIDRDRYMS 265

Query: 244 PWEAKEYGIVDAVIDDGKVGLVAPIGDTAPP 275
           P EA EYG++D VID   +  + P+ D   P
Sbjct: 266 PIEAVEYGLIDGVIDGDSIIPLEPVPDRVKP 267
[Close]
BLAST of Spo00538.1 vs. TAIR (Arabidopsis)
Match: AT1G02560.1 (nuclear encoded CLP protease 5)

HSP 1 Score: 202.6 bits (514), Expect = 3.700e-52
Identity = 113/237 (47.68%), Postives = 151/237 (63.71%), Query Frame = 1 

		  

Query: 27  KQLKPSTPSFFSGTNSWNQNRSRITHVKALKGSIERNTLSSNWEFSATAAPRLP------ 86
           K  K STP      N W         V +++  ++   + S+  F A A  + P      
Sbjct: 54  KNWKNSTPKAVYSGNLWTPEIPSPQGVWSIRDDLQ---VPSSPYFPAYAQGQGPPPMVQE 113

Query: 87  RFEELDITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDAEDPKKDIKLFINSPGGSVTA 146
           RF+   I + L + RII  G  +DD  A+ +++QLL LDA DP KDI +++NSPGGSVTA
Sbjct: 114 RFQS--IISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTA 173

Query: 147 GMGIYDAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRYCMPNSRVMIHQPLGTAGGKA 206
           GM I+D M+  + DVST C+GLAASMGAFLL++G+KGKRY +PNSR+MIHQPLG A G  
Sbjct: 174 GMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQ 233

Query: 207 TDMSIRIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDNFMNPWEAKEYGIVDAVI 258
           TD+ I+  EM +HK  LN  ++  TG+  E+I  DTDRD FM+  EAKEYG++D VI
Sbjct: 234 TDIDIQANEMLHHKANLNGYLAYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 285
[Close]
BLAST of Spo00538.1 vs. TAIR (Arabidopsis)
Match: AT5G23140.1 (nuclear-encoded CLP protease P7)

HSP 1 Score: 167.2 bits (422), Expect = 1.700e-41
Identity = 82/180 (45.56%), Postives = 126/180 (70.00%), Query Frame = 1 

		  

Query: 86  DITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDAEDPKKDIKLFINSPGGSVTAGMGIY 145
           DI + LL++RII +   I+D T+  V++QLL L++E+P K I +++NSPGG VTAG+ IY
Sbjct: 48  DIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIY 107

Query: 146 DAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRYCMPNSRVMIHQPLGTAGGKATDMSI 205
           D M+  ++ +ST C+G AASM + LLA+G+KG+R  +PN+ VMIHQP G   G+A D++I
Sbjct: 108 DTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITI 167

Query: 206 RIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDNFMNPWEAKEYGIVDAVIDDGKVGLV 265
             +++      LN++  + TG+P + +  + DRD+FM P EAK +GI+D VID+  + LV
Sbjct: 168 HTKQIVRVWDALNELYVKHTGQPLDVVANNMDRDHFMTPEEAKAFGIIDEVIDERPLELV 227
[Close]
BLAST of Spo00538.1 vs. TAIR (Arabidopsis)
Match: AT1G11750.2 (CLP protease proteolytic subunit 6)

HSP 1 Score: 151.4 bits (381), Expect = 9.700e-37
Identity = 75/174 (43.10%), Postives = 112/174 (64.37%), Query Frame = 1 

		  

Query: 85  LDITNMLLRQRIIFLGSQIDDTTADFVISQLLLLDAEDPKKDIKLFINSPGGSVTAGMGI 144
           LD++++L R RIIF+G  I+   A  VISQL+ L + D K DI +++N PGGS  + + I
Sbjct: 113 LDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAI 172

Query: 145 YDAMKQCKADVSTTCMGLAASMGAFLLASGSKGKRYCMPNSRVMIHQPLGTAGGKATDMS 204
           YD M   K  V T   G+AAS GA LLA G KG RY MPN+RVMIHQP    GG   D+ 
Sbjct: 173 YDCMSWIKPKVGTVAFGVAASQGALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVR 232

Query: 205 IRIREMAYHKVKLNKIMSRITGKPEEQIEIDTDRDNFMNPWEAKEYGIVDAVID 259
            ++ E    + K++++ +  TG+P E+++  T+RD F++  EA E+G++D +++
Sbjct: 233 RQVNEAIEARQKIDRMYAAFTGQPLEKVQQYTERDRFLSASEALEFGLIDGLLE 286
The following BLAST results are available for this feature:
BLAST of Spo00538.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902223776|gb|KNA19573.1|8.8e-181100.hypothetical protein SOVF_0603... [more]
gi|731315967|ref|XP_010693678.1|2.3e-14481.8PREDICTED: ATP-dependent Clp p... [more]
gi|659114541|ref|XP_008457103.1|3.5e-12168.8PREDICTED: ATP-dependent Clp p... [more]
gi|848863650|ref|XP_012832588.1|2.3e-12071.1PREDICTED: ATP-dependent Clp p... [more]
gi|356569022|ref|XP_003552706.1|9.6e-11980.5PREDICTED: ATP-dependent Clp p... [more]
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BLAST of Spo00538.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RJB1_SPIOL6.1e-181100.ATP-dependent Clp protease pro... [more]
A0A0J8CYD4_BETVU1.6e-14481.8ATP-dependent Clp protease pro... [more]
A0A022RML7_ERYGU1.6e-12071.1ATP-dependent Clp protease pro... [more]
A0A0B2PXR4_GLYSO6.7e-11980.5ATP-dependent Clp protease pro... [more]
I1N579_SOYBN6.7e-11980.5ATP-dependent Clp protease pro... [more]
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BLAST of Spo00538.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLPP3_ARATH2.1e-11368.7ATP-dependent Clp protease pro... [more]
CLPP1_NOSS14.7e-5760.6ATP-dependent Clp protease pro... [more]
CLPP2_SYNE78.0e-5760.4ATP-dependent Clp protease pro... [more]
CLPP3_SYNP68.0e-5760.4ATP-dependent Clp protease pro... [more]
CLPP1_ANAVT8.0e-5760.6ATP-dependent Clp protease pro... [more]
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BLAST of Spo00538.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G66670.11.2e-11468.7CLP protease proteolytic subun... [more]
AT5G45390.12.0e-5342.0CLP protease P4[more]
AT1G02560.13.7e-5247.6nuclear encoded CLP protease 5[more]
AT5G23140.11.7e-4145.5nuclear-encoded CLP protease P... [more]
AT1G11750.29.7e-3743.1CLP protease proteolytic subun... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001907ATP-dependent Clp protease proteolytic subunitPRINTSPR00127CLPPROTEASEPcoord: 235..254
score: 1.5E-47coord: 157..174
score: 1.5E-47coord: 86..101
score: 1.5E-47coord: 126..146
score: 1.5E-47coord: 178..197
score: 1.5
IPR001907ATP-dependent Clp protease proteolytic subunitHAMAPMF_00444ClpPcoord: 59..260
score: 36
IPR018215ClpP, Ser active sitePROSITEPS00381CLP_PROTEASE_SERcoord: 157..168
scor
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPANTHERPTHR10381ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNITcoord: 27..313
score: 1.3E
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPFAMPF00574CLP_proteasecoord: 85..258
score: 1.0
NoneNo IPR availablePANTHERPTHR10381:SF20ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 3, CHLOROPLASTICcoord: 27..313
score: 1.3E

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0005524 ATP binding