Spo00179.1 (mRNA)

Overview
NameSpo00179.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionMalate synthase (2.3.3.9)
Locationchr1 : 30911447 .. 30915737 (+)
Sequence length390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGTAGGAAGGAGGCTACGGCTACCTATAATAGTGGGGTGTTGTCGGGGCTCGATCTTACCACTGGGAAGTTTAGGGAAGGTGATTGGCTGTGTGTTGCGCCACCGCCCGCGGTTGCTGATCGGAGGGTTGAGATTACAGGTCCGGTCGACAGGAAGATGATTATGAATGCTCTTGTTTATTCGTTGAGATCAGGGTAATGGTATCGTTATGTGGTGTTGAAAACAAATTTTTAAATTTTTTAAGGTGTTAAAATACAATAAAAAATAAGTAAGGTGTTAAAAAATAAAAAGTGGTTTTTAAAAGGTGTTAAAACACAAATATACCTATAAGAAAAGTTCTCTTTCCTTTACTTTTGGTAAGAAAAAGAAACTAGGCTATAAGCTTTGGATCGATCCTCAAGCGTTTTATGATTAGGTTTCCCCAACCAGCGTATCACATTAATTTTGTTAATGTTAGGAGAAAAAGTAAACACTCAAAGAGGGAAGAAATTACGTTAGGAGGAGATTAGAGAAGAGGGAAGAAATTACTTGTCTTTTTTCCTTCAAAAATTAGCTCCAATCTGATAAAATAGAGTTGTTGCTTGTGAATTGTGTTGAAGATGATGAGGGATGACAAATTCATATGGAGATAGTTGGGAAGATGATCAGAGCGCATGAATTAGATTAACCAAATTGAGTTTATTTTTCATTTTTAGTTAACCGGAGGTTTAATTAGTTTTTAATCAGTTTTGATAATGATAAAAAAAATTAAACGAGAATCAGCTTTGTGTTTTTTATAAACAAAATAACTAAAAAGGCTAAGGGGCTCTTCCGTACTCTTTCAGTTTCCTCCGTTAAACAAACATGTTCGGTAAAATCATTTGTTAAAATCCAATCTGGGACTTTTTGACAAAACAAAACGATAACATATTAGAACATCATCAGCCCTAAATTTAAAGACTTGTTGTGCTGAGATGACATATGAGTCATCTATTCTTAAGATCAGGCAAAGAAATTTGTAGGACTGAAGTGGATTGTCTTGACAAAGTCTTAAATTGAGTCTTGAAAAACCAAGACTCAACTTAAGACTCAATATACGAGTTGTATAAAATAATATCGCACATAAATTTAGGAGTCTTAAATAAATTTGAGGGGTATATTGCTCAGTTTTATTGAATCTAGTCTTTAATTTGGTAAAGTAACCGAGGGTAGTACAAACTATTCTTAGGGCGACACGAAAAGTGATGTTACGAAAAACCCCTCTACTCTTGGCTTATATAACAGAGATTCGGACTAATAGCCGAATTGAATCTCCCTTCCCAAATTCACTACTCACTAGCACCTTCCTTCTCCCATCTTTTTTTTGTTAGCAAAAATTAGTTCACTAATACTAATAAAATAGTCATAACTAGACCTGTTCAACGGAGCGGGTTCGGGCTGAAATTAAATGAGCCGGGACGATCGAGCCCGAACAGTTTTTTCCGGGCCAGACTATGTTTTATTCAGTCTGAATTTAGAAAATTAAATAAAAAACATTCATAACCATTTTGACATCTTTATCCACTACTCTAATAGACTAATACCAAAAACCCCATACCCATTTTGAAGTTTTAATACTTTTACAACACCATAGGCCCATTAACCACGAAAATACAGAGGAGAGAGAAAGTTAGAAAGAGGGGGAGAGAAAGAAAGAGAAAGACACCTCCCACTTTCCTCATACTTCCTCCGTTCTTTTTTAAATGACACAATTATTTAGGAACGTTTGCCAATGTACAATTTCAAACATTAATATCTCTAATTGTGGATCAGATTTTTTTTTAAAAAAGTTGATATTAAAATAATATTTACTGATACGAATCTAATAAGATCCCACACGACTATGTTTTTTCTTATGTATAAACCACAAAAGGAAGTCAAATGTGCTTGTGTGAATAGTGTCTAAAACCCCATTATATCGTGTAAATAAGAACAGAGGGAGTATTATTCTTCCCCAAATTTTTATTATTTTTTGTTTGATTTAATCAGCTTGAATTTTCATATAGGACCCAAACAACACCCAGCTACTCCACCGTCTTCCTCCCTTTTTCTTTTTAATTTTTATTTTCAATAAATTGTTATTTTTGTTTGAAAGCTGCTCTTCAACAAAACCACCATTAAAGATAACCTTTGTTTTTTGTTAATCTGAGCTCCATTTATGGGTCTTTTTAAAAAACTCAAGCGGTTTACTTTCATTTTCAGATTCTGGGTAACGCTGATTTCTCTTTGTTCTCCCTTAATTGGGTATTTGGGTTGCATTCCTAATTTTAAAGCTTGAATTTTTTGTATTTTTTTAATATATACTCCCTCCGTCCCGGAATACTCGACCCGGTTTGACCGGCACAGAGTTTAAGGGATTTGAATTGACTTATTTAATTTAATAGGTAGTAGTTGATAGTGGAGTATTATTTTAATGTAGTTAGTGGGAAATGTGTAAAGGGGTGGGGTTGGGGGAGAGTAGGGGTTGGATTTTTAATTATTTTTTGTATGGAGTAGGGGGTAGGTGGGTTAATAGGGGTGGGGTGAGAAATAATATAATATTGTTAGAATATTTCCATTTCTAGAAACAGGTCAAGTATTAAGGGACGACCCGATAAGGAAAACAGGTCAAGTATTCCGGGACGGAGGGAGTATATAAAATAATTCAGGTTAAGGGATTTTTCTTTGATTTCCTAGTTGTTGCAATTCTGAATCTGAATTAAAAACCCTTATTTGGAAATTCAAAATCGTAGTTGGTCCATTTATAACATTTAAGGGCTGAGCCCGTTTATAAACGGGCTGGATACGGGCTTTTACGGAAGACTCGGCCCATTGAACATGTCTAGTCATAACTCATACGATATAGTAACCTCCTCCCTATCTTGTCATCTGCTAAATCCATAATTGGGATAATATTCTCCACAATATTATCTTTCTTTCCTAGATATTCTAGTTGACTTGTGATTATCAACTGAATCATATTTCAAATGTCCGGCCTCTAGATTTTCTCCTTAATTCCTGCCTCTACCATGATCTCCTCCTTGTCAATATCCCCTTTAAACTCCATTTCATTTGCACGTTTAATTAGATTTTCATGAGCATCCTCTTATCATAAAAATTTTATAATAATTAAGTGCATTGATCCAAGGTATAGTGTATAGTGTAAGTGTGTAACTATTGATATATTTATTTGATTTAAAGTGTGGTTGTGGTGATTATGATTTACAATTTGTCTCTAATGATATATATATATATATATATATATATATATGCATTATTTGGCAGCCTCCAATTCATTTTTATCTCGACATGTCCTCTATGACTTATATACGACAAAAGGAAAGTTCTGTTTTTGACGTCAACGGAGCAGTATTTTCCGGACAACTTAGCGCCGTCATGTGTTCTGACAGTACAGAAGTTGAAAAGTACTGCGATTCATCTCTATTATATAAAGGAACAGCTGAGGGCTTTTTAGTAACTTAACTTTTCGTGTCCCCCAAGTAAATGACTAAAATACCCTCAGTGTGTTGTTTATCGGGCTTGCTGAGTATTCGTTTCTAGGGTTAGATTTTGATATTTCGCTCTCCTCTCACCTGCCTCTCTCCCGCCTCACTTTTCTTCTCTCTCTCCCTCTTCACATTCAACCCTTTCTTCATCTCTCCTCTCACATTTTAGTTTTTTGAATTTTCTGCTCCTCAGATCTTTCCCCTCCTGTAAATTCTGGATCATTAACCTAGCGGATAGCACAATCACCGGAGAGTTTACCGGCGTGTTTGTCGGCGGAGTAAGGCACCTTAGGGAGTGCCTTACGGACCTTCTTTGTTCGTCGGATCTGAAGCATCGCCATTAGCAAAGCGCAGAGGAGAACGACGATTGTTTTGTCATTTTATCAACTCACAAAGGTAAACCCTTGCATTTTTCTCCTTTTCCGTCGTTAATCTTCATTTTCCTCTATTATTATTCCCAAAACCCTAATTGTTGCTTTGTGTCGGCGGTGGTTTCTTAGAAATCTGATGGTGGTTAGGCGCTCTCTCTTCGAAATCGCCGCCGCCGTCATGCTTCATCTCATCATAATGTTTCATCGCCGCCGCTGTCGGGTGAGTGAATCCTGAATTGAAACCTAACATCAGAACTCGAAAGGTAGTAGTAGCTATGGGGTCCTGGATTTAAACCTTGATTTCATAAAATCTTCCTTGAATTTCATAATTTACGGATTGATTATTGATTTTGATATTTGGTGCTCAAAACCCTAACAGGTGAATGCCGTGAATCTCTAGGGTTTGTTTGA

mRNA sequence

ATGGAGTGTAGGAAGGAGGCTACGGCTACCTATAATAGTGGGGTGTTGTCGGGGCTCGATCTTACCACTGGGAAGTTTAGGGAAGGTGATTGGCTGTGTGTTGCGCCACCGCCCGCGGTTGCTGATCGGAGGGTTGAGATTACAGGTCCGGTCGACAGGAAGATGATTATGAATGCTCTTGTTTATTCGTTGAGATCAGGATCTTTCCCCTCCTGTAAATTCTGGATCATTAACCTAGCGGATAGCACAATCACCGGAGAGTTTACCGGCGTGTTTGTCGGCGGAGCGCTCTCTCTTCGAAATCGCCGCCGCCGTCATGCTTCATCTCATCATAATGTTTCATCGCCGCCGCTGTCGGGTGAATGCCGTGAATCTCTAGGGTTTGTTTGA

Coding sequence (CDS)

ATGGAGTGTAGGAAGGAGGCTACGGCTACCTATAATAGTGGGGTGTTGTCGGGGCTCGATCTTACCACTGGGAAGTTTAGGGAAGGTGATTGGCTGTGTGTTGCGCCACCGCCCGCGGTTGCTGATCGGAGGGTTGAGATTACAGGTCCGGTCGACAGGAAGATGATTATGAATGCTCTTGTTTATTCGTTGAGATCAGGATCTTTCCCCTCCTGTAAATTCTGGATCATTAACCTAGCGGATAGCACAATCACCGGAGAGTTTACCGGCGTGTTTGTCGGCGGAGCGCTCTCTCTTCGAAATCGCCGCCGCCGTCATGCTTCATCTCATCATAATGTTTCATCGCCGCCGCTGTCGGGTGAATGCCGTGAATCTCTAGGGTTTGTTTGA

Protein sequence

MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNALVYSLRSGSFPSCKFWIINLADSTITGEFTGVFVGGALSLRNRRRRHASSHHNVSSPPLSGECRESLGFV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo00179Spo00179gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo00179.1Spo00179.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00179.1.exon.1Spo00179.1.exon.1exon
Spo00179.1.exon.2Spo00179.1.exon.2exon
Spo00179.1.exon.3Spo00179.1.exon.3exon
Spo00179.1.exon.4Spo00179.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00179.1.CDS.1Spo00179.1.CDS.1CDS
Spo00179.1.CDS.2Spo00179.1.CDS.2CDS
Spo00179.1.CDS.3Spo00179.1.CDS.3CDS
Spo00179.1.CDS.4Spo00179.1.CDS.4CDS


Homology
[Close]
BLAST of Spo00179.1 vs. NCBI nr
Match: gi|902157172|gb|KNA06099.1| (hypothetical protein SOVF_184210 [Spinacia oleracea])

HSP 1 Score: 104.4 bits (259), Expect = 1.500e-19
Identity = 48/60 (80.00%), Postives = 50/60 (83.33%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECRKEA A YNSG L G D TT K REGDW C APPPAVADRRVEITGPV+RKMI+NAL
Sbjct: 63  MECRKEAKAKYNSGALPGFDPTTKKIREGDWCCAAPPPAVADRRVEITGPVERKMIINAL 122
[Close]
BLAST of Spo00179.1 vs. NCBI nr
Match: gi|731333839|ref|XP_010677928.1| (PREDICTED: malate synthase, glyoxysomal [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 98.2 bits (243), Expect = 1.100e-17
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           M+CRKEA A YNSG L   D TT K REG+W+C APPPAVADRRVEITGPV+RKMI+NAL
Sbjct: 62  MQCRKEAKAKYNSGALPWFDPTTRKIREGNWVCSAPPPAVADRRVEITGPVERKMIINAL 121
[Close]
BLAST of Spo00179.1 vs. NCBI nr
Match: gi|747053678|ref|XP_011073010.1| (PREDICTED: malate synthase, glyoxysomal [Sesamum indicum])

HSP 1 Score: 95.5 bits (236), Expect = 7.200e-17
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECRKEA   YN+G L G D  T   REG+W+C APPPAVADRRVEITGPV+RKMI+NAL
Sbjct: 63  MECRKEAKMRYNNGALPGFDPATKYVREGEWVCAAPPPAVADRRVEITGPVERKMIINAL 122
[Close]
BLAST of Spo00179.1 vs. NCBI nr
Match: gi|848913054|ref|XP_012854673.1| (PREDICTED: malate synthase, glyoxysomal [Erythranthe guttata])

HSP 1 Score: 91.7 bits (226), Expect = 1.000e-15
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECRK+A   YN+G L G D  T   R+GDWLC A PP VADRRVEITGPV+RKMI+NAL
Sbjct: 66  MECRKDAKMRYNNGALPGFDPATAHVRDGDWLCAAVPPPVADRRVEITGPVERKMIINAL 125
[Close]
BLAST of Spo00179.1 vs. NCBI nr
Match: gi|703124610|ref|XP_010103099.1| (Malate synthase [Morus notabilis])

HSP 1 Score: 91.3 bits (225), Expect = 1.400e-15
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           +ECRKEA   YN G L G D  T   REGDW+C A PPAVADR+VEITGPV+RKMI+NAL
Sbjct: 67  LECRKEAKRRYNDGALPGFDPATKYIREGDWVCAAVPPAVADRKVEITGPVERKMIINAL 126
[Close]
BLAST of Spo00179.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFS2_SPIOL (Malate synthase OS=Spinacia oleracea GN=SOVF_184210 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.100e-19
Identity = 48/60 (80.00%), Postives = 50/60 (83.33%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECRKEA A YNSG L G D TT K REGDW C APPPAVADRRVEITGPV+RKMI+NAL
Sbjct: 63  MECRKEAKAKYNSGALPGFDPTTKKIREGDWCCAAPPPAVADRRVEITGPVERKMIINAL 122
[Close]
BLAST of Spo00179.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CGS7_BETVU (Malate synthase OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g110660 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.700e-18
Identity = 45/60 (75.00%), Postives = 50/60 (83.33%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           M+CRKEA A YNSG L   D TT K REG+W+C APPPAVADRRVEITGPV+RKMI+NAL
Sbjct: 62  MQCRKEAKAKYNSGALPWFDPTTRKIREGNWVCSAPPPAVADRRVEITGPVERKMIINAL 121
[Close]
BLAST of Spo00179.1 vs. UniProtKB/TrEMBL
Match: A0A022Q682_ERYGU (Malate synthase OS=Erythranthe guttata GN=MIMGU_mgv1a003675mg PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.200e-16
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECRK+A   YN+G L G D  T   R+GDWLC A PP VADRRVEITGPV+RKMI+NAL
Sbjct: 66  MECRKDAKMRYNNGALPGFDPATAHVRDGDWLCAAVPPPVADRRVEITGPVERKMIINAL 125
[Close]
BLAST of Spo00179.1 vs. UniProtKB/TrEMBL
Match: W9RKE6_9ROSA (Malate synthase OS=Morus notabilis GN=L484_005078 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.400e-16
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           +ECRKEA   YN G L G D  T   REGDW+C A PPAVADR+VEITGPV+RKMI+NAL
Sbjct: 67  LECRKEAKRRYNDGALPGFDPATKYIREGDWVCAAVPPAVADRKVEITGPVERKMIINAL 126
[Close]
BLAST of Spo00179.1 vs. UniProtKB/TrEMBL
Match: D7LWU5_ARALL (Malate synthase OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_660232 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.200e-15
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECR+EA   YNSG + G D +T   R+GDW+C + PPAVADRRVEITGPV+RKMI+NAL
Sbjct: 58  MECRREARRRYNSGAVPGFDPSTKFIRDGDWICASVPPAVADRRVEITGPVERKMIINAL 117
[Close]
BLAST of Spo00179.1 vs. ExPASy Swiss-Prot
Match: MASY_ARATH (Malate synthase OS=Arabidopsis thaliana GN=MLS PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.200e-17
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECR+EA   YNSG + G D +T   R+GDW C + PPAVADRRVEITGPV+RKMI+NAL
Sbjct: 58  MECRREARRRYNSGAVPGFDPSTKFIRDGDWSCASVPPAVADRRVEITGPVERKMIINAL 117
[Close]
BLAST of Spo00179.1 vs. ExPASy Swiss-Prot
Match: MASY_GOSHI (Malate synthase, glyoxysomal OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.200e-17
Identity = 42/60 (70.00%), Postives = 44/60 (73.33%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECRKEA   YN G L G D  T   REG W CV  PPAVADRRVEITGPV+RKMI+NAL
Sbjct: 63  MECRKEAKRRYNEGALPGFDPATRYIREGKWTCVPFPPAVADRRVEITGPVERKMIINAL 122
[Close]
BLAST of Spo00179.1 vs. ExPASy Swiss-Prot
Match: MASY_BRANA (Malate synthase, glyoxysomal OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-16
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECR+E    YNSG + G D +T   R+G+W+C + PPAVADRRVEITGPV+RKMI+NAL
Sbjct: 58  MECRREVKRRYNSGAVPGFDPSTKFIRDGEWVCASVPPAVADRRVEITGPVERKMIINAL 117
[Close]
BLAST of Spo00179.1 vs. ExPASy Swiss-Prot
Match: MASY_CUCMA (Malate synthase, glyoxysomal OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.600e-16
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECR+EA   YN G + G D  T   RE +W C + PPAVADRRVEITGPV+RKMI+NAL
Sbjct: 63  MECRREAKRRYNEGAVPGFDPATKYIRESEWTCASVPPAVADRRVEITGPVERKMIINAL 122
[Close]
BLAST of Spo00179.1 vs. ExPASy Swiss-Prot
Match: MASY_CUCSA (Malate synthase, glyoxysomal OS=Cucumis sativus PE=2 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 1.800e-15
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECR+EA   YN G L G D  T   R+ +W C   PPAVADRRVEITGPV+RKMI+NAL
Sbjct: 64  MECRREAKRRYNEGGLPGFDPATKYIRDSEWTCAPVPPAVADRRVEITGPVERKMIINAL 123
[Close]
BLAST of Spo00179.1 vs. TAIR (Arabidopsis)
Match: AT5G03860.1 (malate synthase)

HSP 1 Score: 89.4 bits (220), Expect = 1.800e-18
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1 

		  

Query: 1   MECRKEATATYNSGVLSGLDLTTGKFREGDWLCVAPPPAVADRRVEITGPVDRKMIMNAL 60
           MECR+EA   YNSG + G D +T   R+GDW C + PPAVADRRVEITGPV+RKMI+NAL
Sbjct: 58  MECRREARRRYNSGAVPGFDPSTKFIRDGDWSCASVPPAVADRRVEITGPVERKMIINAL 117
The following BLAST results are available for this feature:
BLAST of Spo00179.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902157172|gb|KNA06099.1|1.5e-1980.0hypothetical protein SOVF_1842... [more]
gi|731333839|ref|XP_010677928.1|1.1e-1775.0PREDICTED: malate synthase, gl... [more]
gi|747053678|ref|XP_011073010.1|7.2e-1771.6PREDICTED: malate synthase, gl... [more]
gi|848913054|ref|XP_012854673.1|1.0e-1568.3PREDICTED: malate synthase, gl... [more]
gi|703124610|ref|XP_010103099.1|1.4e-1568.3Malate synthase [Morus notabil... [more]
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BLAST of Spo00179.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QFS2_SPIOL1.1e-1980.0Malate synthase OS=Spinacia ol... [more]
A0A0J8CGS7_BETVU7.7e-1875.0Malate synthase OS=Beta vulgar... [more]
A0A022Q682_ERYGU7.2e-1668.3Malate synthase OS=Erythranthe... [more]
W9RKE6_9ROSA9.4e-1668.3Malate synthase OS=Morus notab... [more]
D7LWU5_ARALL1.2e-1566.6Malate synthase OS=Arabidopsis... [more]
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BLAST of Spo00179.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MASY_ARATH3.2e-1766.6Malate synthase OS=Arabidopsis... [more]
MASY_GOSHI4.2e-1770.0Malate synthase, glyoxysomal O... [more]
MASY_BRANA1.2e-1663.3Malate synthase, glyoxysomal O... [more]
MASY_CUCMA4.6e-1663.3Malate synthase, glyoxysomal O... [more]
MASY_CUCSA1.8e-1563.3Malate synthase, glyoxysomal O... [more]
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BLAST of Spo00179.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G03860.11.8e-1866.6malate synthase[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001465Malate synthasePFAMPF01274Malate_synthasecoord: 1..63
score: 6.
IPR011076Malate synthase-likeunknownSSF51645Malate synthase Gcoord: 2..64
score: 4.5
NoneNo IPR availableGENE3D3.20.20.360coord: 27..82
score: 1.
NoneNo IPR availablePANTHERPTHR21631ISOCITRATE LYASE/MALATE SYNTHASEcoord: 1..60
score: 1.5
NoneNo IPR availablePANTHERPTHR21631:SF1MALATE SYNTHASE 1, GLYOXYSOMAL-RELATEDcoord: 1..60
score: 1.5

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006097 glyoxylate cycle
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0006099 tricarboxylic acid cycle
cellular_component GO:0005634 nucleus
cellular_component GO:0005777 peroxisome
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004474 malate synthase activity