Spo27333 (gene)

Overview
NameSpo27333
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 23699242 .. 23699729 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAATGAAGATGACCTGTCCTGCTCCGAGCTGCCCATCTCAGGTGAACAGCTTGGGGATCTTCAACAGCCTCTCATTGTTAAGACAGATTCGTCCATGGATAACCTTCATTAGTGAAATAGGTAGGGTTTTCTAAATACCCTTCATTCATTCTGTTCCTTGAAGGCTCGTGCATTTTGAGATTTTATTTTTGTTGATTCACTTTGACATGAAAAACGCTTGTCCTTTTTTCGTTTGTGTGCAGCTGCATTTGACGTTCCTACACTTTGTACAGCCTTAAGTTTACATTTCCCTTCAGCAATATCTTCGTTTGTGTATAGCGTTTTCATTAATGCTGAAATCAGAATTACTAATTTGAGATGGTAAGGATTTTGCTGGACCAGTCATGCTATTTGCTCGCGATTGACGAAAATGAAAGATGAGGTTAATCAAGATATTGCTGAAAGTGACCATTTTCTTCGAACTAGGGTATTAGCTAATTGTTAG

mRNA sequence

ATGAGAATGAAGATGACCTGTCCTGCTCCGAGCTGCCCATCTCAGGTGAACAGCTTGGGGATCTTCAACAGCCTCTCATTGTTAAGACAGATTCGTCCATGGATAACCTTCATTAGTGAAATAGCTGCATTTGACGTTCCTACACTTTGTACAGCCTTAAGTTTACATTTCCCTTCAGCAATATCTTCTCATGCTATTTGCTCGCGATTGACGAAAATGAAAGATGAGGTTAATCAAGATATTGCTGAAAGTGACCATTTTCTTCGAACTAGGGTATTAGCTAATTGTTAG

Coding sequence (CDS)

ATGAGAATGAAGATGACCTGTCCTGCTCCGAGCTGCCCATCTCAGGTGAACAGCTTGGGGATCTTCAACAGCCTCTCATTGTTAAGACAGATTCGTCCATGGATAACCTTCATTAGTGAAATAGCTGCATTTGACGTTCCTACACTTTGTACAGCCTTAAGTTTACATTTCCCTTCAGCAATATCTTCTCATGCTATTTGCTCGCGATTGACGAAAATGAAAGATGAGGTTAATCAAGATATTGCTGAAAGTGACCATTTTCTTCGAACTAGGGTATTAGCTAATTGTTAG

Protein sequence

MRMKMTCPAPSCPSQVNSLGIFNSLSLLRQIRPWITFISEIAAFDVPTLCTALSLHFPSAISSHAICSRLTKMKDEVNQDIAESDHFLRTRVLANC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo27333.1Spo27333.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo27333.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo27333.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo27333.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo27333.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018874 benzoate metabolic process
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0010091 trichome branching
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0010351 lithium ion transport
biological_process GO:0006869 lipid transport
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0007032 endosome organization
biological_process GO:0016197 endosomal transport
biological_process GO:0007033 vacuole organization
biological_process GO:0006574 valine catabolic process
biological_process GO:0006554 lysine catabolic process
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0009908 flower development
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0006568 tryptophan metabolic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0046251 limonene catabolic process
cellular_component GO:0005634 nucleus
cellular_component GO:0005618 cell wall
cellular_component GO:0005771 multivesicular body
cellular_component GO:0005777 peroxisome
cellular_component GO:0009507 chloroplast
cellular_component GO:0009506 plasmodesma
molecular_function GO:0005524 ATP binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0004300 enoyl-CoA hydratase activity
molecular_function GO:0004165 dodecenoyl-CoA delta-isomerase activity
molecular_function GO:0008692 3-hydroxybutyryl-CoA epimerase activity
molecular_function GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo079260.71Barchart | Table
Spo076990.69Barchart | Table
Spo157990.66Barchart | Table