Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAGTCATTCGCAAAAGGGAAAAGAAGGAAAAAGAAAAAAGCTTTTCTAGTGTCAATCATGTCCGAATCACGTGACTTTAATTCAATAGTTCCACTTTCACCGCCATCGTTGGCATCGTTCCCCGTTTGTTTGCTTTCTTCTGCTCAAATTTAGTGCAATTTGAAGACTCCTCCCATCTTTCTCCCATTGAATTTGAGTAAATTGCTGCAATTTCAAGACTCTTCCCGCTAATTCTCAAGCATTCAAGATCAGGTAACTCGAAATTTTATTTGATTCAATTTCGGATTATAATTTTAGGGTTTAAAATTAAGTTTAGGGTTTATTGGGGGGTTTTCGGGTTGCTATTGTCTTATGGGTTTATGTTGCTAAAATTGCAGCATATATCAAAACAATTTGAATAATTGAATTTTGCCCAAACATTGTATGTCATTGATTATGTACAGTATGCCAATTTTATTGATGTTTTTCGGAACATGTTTTCATGATGAATTCAAGGTTCAAGTTAGTTTGATGAACATTGCAAATGTCCTATTTCAGGAATTCAGTTGTTCTTATCCTTCGTGCAATTAAAATTTTCGAATTGGGTAGAGAAATTATTATCTTATGCTGGGAGAATATGCTATTTGGTTCGAAGTCGCGATCTATTTGATGTTGTTATTTTGTAGGAGGGAATTTTTTTACTGTCTTTTACTTGATTCTGTGTCATTGGAGTGTAGAATCAGCGATAAATCAAGAGGTTTACATTATGAGAATTGGGTAAGTAGTTGTTGAAGGAAATTTTTATGGTGATGAAAAGGATTTTATAGGAGTTAGGTTTGATGCTATGTGCGGATTTTCAGCTAAAAATCCGATCGCTGCTGCAGTGCTGCTGCCAAATAAAAACCCCTTTCTACCTCGAGTTTGCTTATCTCCTTTTGTTGTGTGTCAGATTCCACACGACCTCCCAACTGGGTTTTGGTGACAATGTGACATCTGTGGTGTTGATTGAGATAATTTTGGAGAAGTCTATTGTAGAGATTTCACTTTCCAATTTCTCCACCAGTAAGTGGAGTTGATAGTAGCTTTGCAGAATCTTCGGGATGCATCATTACGTATTTCTAAGTGGTAGCTATAAAGGAATGGAGTTTCGCAAATGCAAAAAGCACTAGACAGCCGAACTTAGGCTGTATTTAGTGACTTGTGTGTGTGTATCTTCCAGAGTTACCTGGTTCGTGGTTCGCTTTGGTACGGGGTACGAGTTCGGGTTCGCGGTTCGCGGGTAGCTGATTTTAGGTTCGCGGGTAGCGGTATGGATTATTTTATTTTATTTTAAATTCAAATTAACAAATAAAAAGCAACCACCATCTTCATTCTTCGGCAGTTCGGCTTTCCAGTTCTTCACCTCGACCTCATCCATGGCTATTATTTTCAGCAAGACGAAAGAACAACAAAAACAACAATTGACGGTAGGAATCAACACATATGTAATTCTCAAACAAAAGCCCCAACATATTTTATCTTCTATCGCTTTCCCGGACTTTCAATCGTTAAAACTAGGGTTTTGGTTTGGTTCGTGAAAAGTCGCGAATTGGATCGCCGGAGAACCACGAATTGGTACAGGCGAACCAGTTCGCGGTTCGCGGGAGTTAGGGGCGAACTAGGTAACACTGGTATCTTCTGATATATGGAAACATCACATTCATTGTTAATGAGTTCACAGATTTTATAGCTGATACAGTAGGGTTCATCATTATCATTATCATTACCCCATTGTCTCAAAGAAGCTCCCGCAAGAAGCGGGGTAAGGGGGGGTCGGGTGTACGCAACCTTACTTCTGCAATTGCAGAAAGGTTGTTTCCAATTGACTCAAAAGCGATAACGGGACGACCATCTTCTACTTCATGGAAAGGAAGCGAAGAGGTTTTAAGAGCCATTTTGATTTAGTCCATTACATCCCACAGCCAAAAGAACAAATGAATCTTTGGCTCTATCGGAAATGGACATATATCAGTACAGTTGATATAGTAGGGTTAGTTTTTAATTTTTCTGGGGATGGATTATTAGGAGTATGTGATTCTAAATACGAAGTATGAAGTAGCATTTGCATGATTTTGATTTTGGTGTCGGTGGTGGTGGTGTGTGTGTAGGGGGAGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGTTCTGTAGTTTTTCTGTCACTGACTTTCAGTTGAGCCTTAAGCAAAGCTTCTGAGTGCTCAGAAGCATACCAAAGGTAGAGCTATGGATTCGTATATCAGTGGTATCTGATATGGGGGGAAGATGGCGTCTTGCTACTGTTTACTTGGTTGGACACTCTTATCTAGAGGGTGCAGTCTGGTGAGTAGTTGGGACTAGCATCAGCTTTGTAATTAGTAGAGAAAACAACTTTAGTTAATTATGATGGTTATTCAGAGAAATGTTGTATTGTGTAGTTACAACCCTGAAGCCTACTGTAATTAATCCTTAATTTCGCTCAGAATGTCGTCCTGTACTTTAACTGCAGCTCTGCTGCTTTCCTCCATTTCTGAGTTCTAGTCTGTTTTTTTTTGGGTGGAAGCTTACCATGATGCTGAGTTGTTATCCCGAAGCTGCAATCTTGCATGTTTTTCCCACTTTCTTTCAACTCAGTTTTCTTGGTTGAATCTCAATTCTCACTTTCTCAGTTCTAAATTTTGGGTGGTTATTGCAGTTTGAAAAATTATGGCTGAAGGAGAGGAAGACTTGCCAAGGGATGCAAAGATTGTGAAGTCGTTATTAAAATCTATGGGTGTTGAGGAGCATGAGCCCCGTGTTGTGCACCAGTTTCTGGAGTTATGGTATAGGTATGTCGTCGATGTGTTGACGGATGCACAAGTTTACTCAGAACATGCAGGCAAAGGCACAATTGACTGTGATGATGTTAAGCTTGCTATCCAATCAAAAGTGAATTTCAGCTTCTCACAACCACCACCCCGGGAGGTACTTTAGCTTTCTATTTACCACTTCTTTCTGTAAATAAATAAAACTATGTTTCCATGTGCATTTTATTGGAATTGCTCTTGTCATGATCTCATTTTCCTTATCGGGATACGAATGCCCCCTTTCTTTAAATTGGCTGATATCTCAAATCCCTACTTGTATGATGGACTAGTAGAACCGTCTTAATCTGGAGAAAAGCTGGGGCAGGATAGAATTAATTATTAAGAAAGGAACAGCACATCGTTTTATTTGTTGTCAGTGTTGATGCATTATTCAAGAACTTAGTGCTCCTTTGGTTCACTTGGGTAGTAACTTCCCATGGGAAGTTCCAATTCATAGGAAGTTAATTCCCTTGTTACTTTCCTAGGAAATAGATTGATTACGTTTGGTTGAACTTGGGAATTCATAATTGATGGGAATTGACATGGGAAGTATGACTTACCAAGGAGAGGGTAGGTAAGCCACTTCCCATGTTCATAGGAATTTCAAACTTCCCAATATAGTTCTAATTCCCCCATTACTCCCATTTCATGCCAACCAAACAAGTAGCTATATACTCCCTCCGTCCCTAAAATATTACCCCAAATGCTTTAGTTCACTTTATTAAGAATTGGTTATAGCCAAAAGCAAAGAGTTAGGTAAATTTATCTTTTTGTTAGATTTAGGGTATATGGGGCAATCTTTTAGGGACGGAGGGAGTATACACTTCCTAGGAACTCACGCTTCCCCCTCTATTTACATGCAACCAAACATCCCCTTAGTGTGAAATTTTTGCGTTCCTATGTCTCAGCTTCTACTGTAGAGATTTTACCAAAAGAATGCTGCAAATCGTTCTTTTTATTTTTCCTGTTATTTGGGTTTTTTGAGGTCATATAGTGGTGAATGATAAAGTTTTAGCAATTTTACTATTGGACCAGGTATTATTAGAGCTTGCTAGAAACAGGAACAAAACCCCGTTACCAAAGAATGTCGGAGGCTCTGGAGTTCCTCTTCCACCCGAAGAGTACACACTGATTAGCCCTAATTACCAGCTAATGACATCAAAGAGACAATCCGCCCAGGCATTTGAAGAACCAGAAGAAGAAGATGATGAAGAAGAAGAAGAAGAGGCCGCTGTTCCTAGCTCCTCTCAAGAACCAAAGAACGATACAATGCAGACCACTCCGCAACGGGTCTCTTTTCCTCTTGCAGCTAAGCGTCCGAAATGCTAATTTGACAACAACCTACATTTGTGTCAGGTTAGATCTTCCAAAACTGACAATTGCCTGTTTCTTAATTACAAATCATACTATAGCGAATTGTCAGATTAATTTGTAAGCATCTGAATTCGTGACCCTAATCTTGCTGTATCTGAATATTGGTAATACTGTCTTATTTTAACAGTAAAGGAGAAGTGATTTTAAGTTTATGTACATTACACTCTATCTGGACCCTGGAGGTGATGTGTTTATAAACACATCTCACAGGGGTATGATGGTAATTTCGCACCACATAAACACGCCATTGTTCACATAAACACACCATCATTTTTATTTTTTATACCATTGTTTTCATAGTCTATACCATTTTTGATATCATTGAAAGTTCAATGTATTTACAAAATTGCCATGTTATGTGTTTGACAATACATAACTATTATGGGTTTTTACTTCCTCCTCTGTAGTGTGCCTTTACCTGTGTTAATTTCTGAAAAATCTTCATATCAACTACTACATCAATAATTGACAATATAATCTTGGATATTTATTTTAGAAAATGGTTTGAGATACGTATTTGCTTACATTTGCTTACAACTACCAATATTAGAC TGAGTCATTCGCAAAAGGGAAAAGAAGGAAAAAGAAAAAAGCTTTTCTAGTGTCAATCATGTCCGAATCACGTGACTTTAATTCAATAGTTCCACTTTCACCGCCATCGTTGGCATCGTTCCCCGTTTGTTTGCTTTCTTCTGCTCAAATTTAGTGCAATTTGAAGACTCCTCCCATCTTTCTCCCATTGAATTTGAGTAAATTGCTGCAATTTCAAGACTCTTCCCGCTAATTCTCAAGCATTCAAGATCAGTTTGAAAAATTATGGCTGAAGGAGAGGAAGACTTGCCAAGGGATGCAAAGATTGTGAAGTCGTTATTAAAATCTATGGGTGTTGAGGAGCATGAGCCCCGTGTTGTGCACCAGTTTCTGGAGTTATGGTATAGGTATGTCGTCGATGTGTTGACGGATGCACAAGTTTACTCAGAACATGCAGGCAAAGGCACAATTGACTGTGATGATGTTAAGCTTGCTATCCAATCAAAAGTGAATTTCAGCTTCTCACAACCACCACCCCGGGAGGTATTATTAGAGCTTGCTAGAAACAGGAACAAAACCCCGTTACCAAAGAATGTCGGAGGCTCTGGAGTTCCTCTTCCACCCGAAGAGTACACACTGATTAGCCCTAATTACCAGCTAATGACATCAAAGAGACAATCCGCCCAGGCATTTGAAGAACCAGAAGAAGAAGATGATGAAGAAGAAGAAGAAGAGGCCGCTGTTCCTAGCTCCTCTCAAGAACCAAAGAACGATACAATGCAGACCACTCCGCAACGGGTCTCTTTTCCTCTTGCAGCTAAGCGTCCGAAATGCTAATTTGACAACAACCTACATTTGTGTCAGGTTAGATCTTCCAAAACTGACAATTGCCTGTTTCTTAATTACAAATCATACTATAGCGAATTGTCAGATTAATTTGTAAGCATCTGAATTCGTGACCCTAATCTTGCTGTATCTGAATATTGGTAATACTGTCTTATTTTAACAGTAAAGGAGAAGTGATTTTAAGTTTATGTACATTACACTCTATCTGGACCCTGGAGGTGATGTGTTTATAAACACATCTCACAGGGGTATGATGGTAATTTCGCACCACATAAACACGCCATTGTTCACATAAACACACCATCATTTTTATTTTTTATACCATTGTTTTCATAGTCTATACCATTTTTGATATCATTGAAAGTTCAATGTATTTACAAAATTGCCATGTTATGTGTTTGACAATACATAACTATTATGGGTTTTTACTTCCTCCTCTGTAGTGTGCCTTTACCTGTGTTAATTTCTGAAAAATCTTCATATCAACTACTACATCAATAATTGACAATATAATCTTGGATATTTATTTTAGAAAATGGTTTGAGATACGTATTTGCTTACATTTGCTTACAACTACCAATATTAGAC ATGGCTGAAGGAGAGGAAGACTTGCCAAGGGATGCAAAGATTGTGAAGTCGTTATTAAAATCTATGGGTGTTGAGGAGCATGAGCCCCGTGTTGTGCACCAGTTTCTGGAGTTATGGTATAGGTATGTCGTCGATGTGTTGACGGATGCACAAGTTTACTCAGAACATGCAGGCAAAGGCACAATTGACTGTGATGATGTTAAGCTTGCTATCCAATCAAAAGTGAATTTCAGCTTCTCACAACCACCACCCCGGGAGGTATTATTAGAGCTTGCTAGAAACAGGAACAAAACCCCGTTACCAAAGAATGTCGGAGGCTCTGGAGTTCCTCTTCCACCCGAAGAGTACACACTGATTAGCCCTAATTACCAGCTAATGACATCAAAGAGACAATCCGCCCAGGCATTTGAAGAACCAGAAGAAGAAGATGATGAAGAAGAAGAAGAAGAGGCCGCTGTTCCTAGCTCCTCTCAAGAACCAAAGAACGATACAATGCAGACCACTCCGCAACGGGTCTCTTTTCCTCTTGCAGCTAAGCGTCCGAAATGCTAA MAEGEEDLPRDAKIVKSLLKSMGVEEHEPRVVHQFLELWYRYVVDVLTDAQVYSEHAGKGTIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKTPLPKNVGGSGVPLPPEEYTLISPNYQLMTSKRQSAQAFEEPEEEDDEEEEEEAAVPSSSQEPKNDTMQTTPQRVSFPLAAKRPKC Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo27101.1 vs. NCBI nr
Match: gi|902164056|gb|KNA06924.1| (hypothetical protein SOVF_176640 [Spinacia oleracea]) HSP 1 Score: 352.1 bits (902), Expect = 6.000e-94 Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 1
BLAST of Spo27101.1 vs. NCBI nr
Match: gi|731327694|ref|XP_010674656.1| (PREDICTED: transcription initiation factor TFIID subunit 9 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 295.8 bits (756), Expect = 5.100e-77 Identity = 152/182 (83.52%), Postives = 160/182 (87.91%), Query Frame = 1
BLAST of Spo27101.1 vs. NCBI nr
Match: gi|1000960724|ref|XP_015576093.1| (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X1 [Ricinus communis]) HSP 1 Score: 274.2 bits (700), Expect = 1.600e-70 Identity = 144/182 (79.12%), Postives = 157/182 (86.26%), Query Frame = 1
BLAST of Spo27101.1 vs. NCBI nr
Match: gi|1000960730|ref|XP_002521322.2| (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Ricinus communis]) HSP 1 Score: 274.2 bits (700), Expect = 1.600e-70 Identity = 144/182 (79.12%), Postives = 157/182 (86.26%), Query Frame = 1
BLAST of Spo27101.1 vs. NCBI nr
Match: gi|743878736|ref|XP_011035723.1| (PREDICTED: transcription initiation factor TFIID subunit 9 [Populus euphratica]) HSP 1 Score: 269.6 bits (688), Expect = 3.900e-69 Identity = 142/182 (78.02%), Postives = 155/182 (85.16%), Query Frame = 1
BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QI52_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_176640 PE=4 SV=1) HSP 1 Score: 352.1 bits (902), Expect = 4.200e-94 Identity = 182/183 (99.45%), Postives = 182/183 (99.45%), Query Frame = 1
BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNR2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g080560 PE=4 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 3.600e-77 Identity = 152/182 (83.52%), Postives = 160/182 (87.91%), Query Frame = 1
BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Match: B9S5Q3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0652310 PE=4 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 1.100e-70 Identity = 144/182 (79.12%), Postives = 157/182 (86.26%), Query Frame = 1
BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Match: B9GKT8_POPTR (TATA BINDING protein ASSOCIATED FACTOR 21KDA SUBUNIT OS=Populus trichocarpa GN=POPTR_0001s16840g PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 2.700e-69 Identity = 141/182 (77.47%), Postives = 155/182 (85.16%), Query Frame = 1
BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Match: A9PCE8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 2.700e-69 Identity = 142/182 (78.02%), Postives = 155/182 (85.16%), Query Frame = 1
BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Match: TAF9_ARATH (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana GN=TAF9 PE=1 SV=1) HSP 1 Score: 238.4 bits (607), Expect = 6.100e-62 Identity = 131/186 (70.43%), Postives = 150/186 (80.65%), Query Frame = 1
BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Match: TAF9_BOVIN (Transcription initiation factor TFIID subunit 9 OS=Bos taurus GN=TAF9 PE=2 SV=1) HSP 1 Score: 139.8 bits (351), Expect = 2.900e-32 Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 1
BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Match: TAF9B_MOUSE (Transcription initiation factor TFIID subunit 9B OS=Mus musculus GN=Taf9b PE=1 SV=2) HSP 1 Score: 134.8 bits (338), Expect = 9.500e-31 Identity = 61/120 (50.83%), Postives = 88/120 (73.33%), Query Frame = 1
BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Match: TAF9_RAT (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus GN=Taf9 PE=2 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 1.600e-30 Identity = 74/172 (43.02%), Postives = 109/172 (63.37%), Query Frame = 1
BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Match: TAF9B_RAT (Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus GN=Taf9b PE=2 SV=2) HSP 1 Score: 133.7 bits (335), Expect = 2.100e-30 Identity = 60/120 (50.00%), Postives = 88/120 (73.33%), Query Frame = 1
BLAST of Spo27101.1 vs. TAIR (Arabidopsis)
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit) HSP 1 Score: 238.4 bits (607), Expect = 3.400e-63 Identity = 131/186 (70.43%), Postives = 150/186 (80.65%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo27101.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo27101.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo27101.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo27101.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|