Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGACTGCTGAACCAATTTTGCATTCATCTTTCTCACTCGAAAACAATTTCACAGAAACAAAACACCATGACTGGAAACGTTGCTAAGAAAAGTTTACAAAGTTATTTGTCCCAGCTTCAACGTCACCCCTTACGAACTAAGGTACTTTCTCTTGAATTTTACAATCTGGGTAATTTTTGTTTTCAATTTTAGCTGTTGATTTTATGGGGTTTTTGTTAATTTTCTTGTTCAATCTTTTCTGATGATAATTTCAGGCAATTACTGCTGGGGTTTTATCAGCAATTAGCGACATAGTTTCCCAGAAACTTTCTGGCATTCAAAAGCTTCAAATCCGCCGTATTTTACTCAAAGTGGTATAAATTTTTGCCCCTTTTTAGTGTAATTAGAATTGGTTTTTGACTAATCCATTAATCAATTGTTTTCTGGGATTTTGAATTGATCCCCAATTTTTTCAATTTTAATTGATTTATGTATTTGACTTCTTCAAAACAAAAAATTCCCCTTTTATTAGCTTTATTTTGTGACGCAATGAATGATGAAGTGCTTGGAAGTTAGATTTTGTATTGGATTTGTTCAAACATCAGTCAAATTAATATTCAAGATTGCAGTGATTCAAAGTTCAAACTTTAACTTTTAATAAGGGTTTACTTCTTTCTGTATAGCTTGCTAATCAAGAAAAGAATAGATAATTAGTGAAAATTACAAAGTCAATATCTAAACGTAGATTGAAGATTATGAAAGAGCTACAGTGTACCGACAATTGCCTTATCCTTTACGGAGTACTACTTATTAGTTTGAATTGCTTGTCGGGAGTGATTAAAATAAAGGATCATCAAACTCATTGCTTTTTTTTGATGGGTGTTGTTGGAGCGGAATTTGACTTGCAATTGTCTAGGATCTTGTTTGCTGCTATACACACTATGTTATAGTTCAAATTCGAATACATAGGCGGTTTAGCAGAATAGCTAGTATACACACACTATGGTACTCAGACTTCATATTAGAATAAGCATAGACGAGCTTTTTACAAGATAGCTAATACGAAGTATATTACATTATGCAACTTCATATTAGAATAAACAAAGATGACACTTTTAGAGGATTGCTAGTGTAAAGTTTGACATTTAAGTACTTCAAATTAGAATAAGCATAAGTCAATAGATTAAAGATTATGAAGTGGTACAGTGTGCCAACAATTGCCTTATCCTTTACGGAGTACTACTTATTACTCCTAGTTTGATTTGGTTGTGGGGAGTGATTAAAATAAAGGATCGTCAACTCATTGCTTTTTTTGATGGGTGTTATTGGAGCGGAATTTGACTTACTATTGTCTACGATCTTGTTTGCTGCTATACACACTATGCTGGTTCAATTGTGAATAAATATAGACGGCCCCTATGGTACTCTGACTTCATACAAGAATAAGCATAGACGAGATTTTTTAGAAGATGGCTAATATATACACTATCTAACTTCAGATTAGAATAAACAAAGACGACACTTTTAGAGGATTGCTAGTGTAAAATTTGATATTTAAGTACTTCAAATTTCAAATTAGAATAAGTATAAATGAGTCAATGACCCTTTTAGAAGATTTGCTAGTATCTTGTAGTATTGTGTATGTGTTCAAGTTTTTCTGATATCTATTACTTTGTTTCCATTTACCAACCTATGTGGGCTCAATGCAGCTTTTTGGATTCGCTTATCTTGGACCGTTCGGACATTTCTTTCACATGATGCTTGATAAGGTTTTCAAGGGGAAGCAGGATCCAAAGACAGTGGCTAAGAAGGTATCATTCATAGACATCCTCATTTATCTAAACTGAATATAAAAAAAAACAATAGAAGTTGATAAGCCACTTTTCTCAGTATGTTAAAGTGTTAATTGAACTTTTCATTTCACCTCAAGAACCTGTGTCACATCCTGAATGATCCAACATGTATATGGACTTGACATGTTCTTTGTAGACTAAGGCCCCGTTTGGTAGGGTGTAAAATGTTTCGTGGAAAACGATTTTCCCCTTTTCAATCATTTTAAGTTGTTTGGTTTTGCAAGGGATGGCAAATAGTTTTCCATAAATCCCTCCAAGGTGGAAAAACCTTTTCCATTTGAAAGTGAAGGAAACCACTTTCTACCTTCCCTCCTTACCTCCCTCTCCCTTCCCCTTAATCTTCACCACCTTCTCCCATTTTCTTTTAAAGAACCAAACAAAGGAAATTAGTTTGGAATTGTGTTTTCCTTGAAAAATGTTTCCATGAAAAATTTGGCTCGTGGACGTGCATCTGTGTCCACTCAAGCAGACTAGGGTGAGTAATATACTTATCACCCATAAGCTTAGGTCAACAATATTACCGTTGTTTTGATTCACTGCCACGTTTTTCTACTGTGAACTAGAAAGGGAGAACTAGTAAAAGTGCTCATATCATCTATATTTTGTATGTTTCAGGTTCTTGTAGAACAATTAACTGTTTCCCCGTTAAACAACATGCTTTTTATGGTATATTACGGATGGATTGTTGAGGGTAAGTTGATCTCACTTTATTATTGTGCAGTTTTTAATCTGCTATGTAAAACTAAGTGCAGCTTATGCATTGCCACTTAACAGTGTTCATTATGGTGTATGGATTCCCAGTGATATGTTTTGATTTATATCACCAGTTGCTTAACACACATGTTGATTGTTGACCGCTCAGCTTGACTACTTTTTGTAAATAAAATTCTTTCTAGCAATCGTAAACCTTCAAAACTCTTTACATCGTACAATGTTTATCTGCTAACGCAGTCCATTGGTCATCATCTCCACTTCTCTCTGCTTCGATGATGCTTCATGTACAGTTGAATCTCATATGAGCATTTGTGTTTAAAAATAATCGCACAGCCAAAATCTTAATCTGGGTTTCTTTTGATAGTTAACTAATTTTATGGAGCTATTAAGTATTAAATTGAACATTCACAATGTGAAATGCAGGAAGACCATGGACTCAGGTCAGAAGTAGAATTAGGAAAGATTATCCATCAGTGCAGTTGACAGCATGGACGGTATATTATACAAATATTTATCTCAATTCAAATCTTTGTTTAAGGTTGGAATTCTGATTTTATTTTCAAATCTAACATTCTCTATTTGATGGTTTGGTTCAGTTTTGGCCCGTTTTTGGGTGGATTAACCACAAGTATGTGCCATTGCACTTGCGCGTGATCTTCCAGAGCTCGATTGCCTTTTGCTGGTAATGAACTTTATTCTCCACATTCCCATTTTTGCTCTGTTTGTCTATATGTATGTATATACAAAATTTTATAATAAAAACCATGTGTTTTCACCAGGAAGCGACACGTGACAATCCTGGTGTCTGTTTTAGTATAATGTAATAGATTTATAACAAAAAACCCGATACTTATGAGTTCTGTGTTTTCTTGTAACTTTTTTCAGGGGGATATTTTTGAACTTACGAGCAAGGTCTATGCTTCTTCCCAAACCTTGA TGACTGCTGAACCAATTTTGCATTCATCTTTCTCACTCGAAAACAATTTCACAGAAACAAAACACCATGACTGGAAACGTTGCTAAGAAAAGTTTACAAAGTTATTTGTCCCAGCTTCAACGTCACCCCTTACGAACTAAGGCAATTACTGCTGGGGTTTTATCAGCAATTAGCGACATAGTTTCCCAGAAACTTTCTGGCATTCAAAAGCTTCAAATCCGCCGTATTTTACTCAAAGTGCTTTTTGGATTCGCTTATCTTGGACCGTTCGGACATTTCTTTCACATGATGCTTGATAAGGTTTTCAAGGGGAAGCAGGATCCAAAGACAGTGGCTAAGAAGGTTCTTGTAGAACAATTAACTGTTTCCCCGTTAAACAACATGCTTTTTATGGTATATTACGGATGGATTGTTGAGGGAAGACCATGGACTCAGGTCAGAAGTAGAATTAGGAAAGATTATCCATCAGTGCAGTTGACAGCATGGACGTTTTGGCCCGTTTTTGGGTGGATTAACCACAAGTATGTGCCATTGCACTTGCGCGTGATCTTCCAGAGCTCGATTGCCTTTTGCTGGGGGATATTTTTGAACTTACGAGCAAGGTCTATGCTTCTTCCCAAACCTTGA ATGACTGGAAACGTTGCTAAGAAAAGTTTACAAAGTTATTTGTCCCAGCTTCAACGTCACCCCTTACGAACTAAGGCAATTACTGCTGGGGTTTTATCAGCAATTAGCGACATAGTTTCCCAGAAACTTTCTGGCATTCAAAAGCTTCAAATCCGCCGTATTTTACTCAAAGTGCTTTTTGGATTCGCTTATCTTGGACCGTTCGGACATTTCTTTCACATGATGCTTGATAAGGTTTTCAAGGGGAAGCAGGATCCAAAGACAGTGGCTAAGAAGGTTCTTGTAGAACAATTAACTGTTTCCCCGTTAAACAACATGCTTTTTATGGTATATTACGGATGGATTGTTGAGGGAAGACCATGGACTCAGGTCAGAAGTAGAATTAGGAAAGATTATCCATCAGTGCAGTTGACAGCATGGACGTTTTGGCCCGTTTTTGGGTGGATTAACCACAAGTATGTGCCATTGCACTTGCGCGTGATCTTCCAGAGCTCGATTGCCTTTTGCTGGGGGATATTTTTGAACTTACGAGCAAGGTCTATGCTTCTTCCCAAACCTTGA MTGNVAKKSLQSYLSQLQRHPLRTKAITAGVLSAISDIVSQKLSGIQKLQIRRILLKVLFGFAYLGPFGHFFHMMLDKVFKGKQDPKTVAKKVLVEQLTVSPLNNMLFMVYYGWIVEGRPWTQVRSRIRKDYPSVQLTAWTFWPVFGWINHKYVPLHLRVIFQSSIAFCWGIFLNLRARSMLLPKP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo27055.1 vs. NCBI nr
Match: gi|902238622|gb|KNA25253.1| (hypothetical protein SOVF_008190 [Spinacia oleracea]) HSP 1 Score: 381.3 bits (978), Expect = 9.400e-103 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1
BLAST of Spo27055.1 vs. NCBI nr
Match: gi|731351015|ref|XP_010686813.1| (PREDICTED: peroxisomal membrane protein PMP22 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 355.9 bits (912), Expect = 4.200e-95 Identity = 169/185 (91.35%), Postives = 180/185 (97.30%), Query Frame = 1
BLAST of Spo27055.1 vs. NCBI nr
Match: gi|645236354|ref|XP_008224695.1| (PREDICTED: peroxisomal membrane protein PMP22 [Prunus mume]) HSP 1 Score: 307.0 bits (785), Expect = 2.300e-80 Identity = 143/183 (78.14%), Postives = 165/183 (90.16%), Query Frame = 1
BLAST of Spo27055.1 vs. NCBI nr
Match: gi|595874565|ref|XP_007212121.1| (hypothetical protein PRUPE_ppa012030mg [Prunus persica]) HSP 1 Score: 304.7 bits (779), Expect = 1.100e-79 Identity = 142/183 (77.60%), Postives = 164/183 (89.62%), Query Frame = 1
BLAST of Spo27055.1 vs. NCBI nr
Match: gi|470114203|ref|XP_004293306.1| (PREDICTED: peroxisomal membrane protein PMP22-like [Fragaria vesca subsp. vesca]) HSP 1 Score: 302.8 bits (774), Expect = 4.300e-79 Identity = 140/183 (76.50%), Postives = 162/183 (88.52%), Query Frame = 1
BLAST of Spo27055.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0K1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_008190 PE=3 SV=1) HSP 1 Score: 381.3 bits (978), Expect = 6.600e-103 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1
BLAST of Spo27055.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BVW7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g185890 PE=3 SV=1) HSP 1 Score: 355.9 bits (912), Expect = 3.000e-95 Identity = 169/185 (91.35%), Postives = 180/185 (97.30%), Query Frame = 1
BLAST of Spo27055.1 vs. UniProtKB/TrEMBL
Match: M5X2M8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012030mg PE=3 SV=1) HSP 1 Score: 304.7 bits (779), Expect = 7.800e-80 Identity = 142/183 (77.60%), Postives = 164/183 (89.62%), Query Frame = 1
BLAST of Spo27055.1 vs. UniProtKB/TrEMBL
Match: A0A068U7A1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017802001 PE=3 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 8.600e-79 Identity = 136/183 (74.32%), Postives = 166/183 (90.71%), Query Frame = 1
BLAST of Spo27055.1 vs. UniProtKB/TrEMBL
Match: A0A067JML1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21195 PE=3 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 8.600e-79 Identity = 143/183 (78.14%), Postives = 163/183 (89.07%), Query Frame = 1
BLAST of Spo27055.1 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 5.000e-72 Identity = 128/177 (72.32%), Postives = 152/177 (85.88%), Query Frame = 1
BLAST of Spo27055.1 vs. ExPASy Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.100e-21 Identity = 54/166 (32.53%), Postives = 100/166 (60.24%), Query Frame = 1
BLAST of Spo27055.1 vs. ExPASy Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 9.400e-18 Identity = 55/172 (31.98%), Postives = 90/172 (52.33%), Query Frame = 1
BLAST of Spo27055.1 vs. ExPASy Swiss-Prot
Match: PXMP2_BOVIN (Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3) HSP 1 Score: 89.0 bits (219), Expect = 6.100e-17 Identity = 49/179 (27.37%), Postives = 97/179 (54.19%), Query Frame = 1
BLAST of Spo27055.1 vs. ExPASy Swiss-Prot
Match: PX24B_DICDI (PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 1.500e-15 Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 1
BLAST of Spo27055.1 vs. TAIR (Arabidopsis)
Match: AT4G04470.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) HSP 1 Score: 271.9 bits (694), Expect = 2.800e-73 Identity = 128/177 (72.32%), Postives = 152/177 (85.88%), Query Frame = 1
BLAST of Spo27055.1 vs. TAIR (Arabidopsis)
Match: AT4G14305.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) HSP 1 Score: 250.4 bits (638), Expect = 8.900e-67 Identity = 111/180 (61.67%), Postives = 146/180 (81.11%), Query Frame = 1
BLAST of Spo27055.1 vs. TAIR (Arabidopsis)
Match: AT5G43140.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) HSP 1 Score: 94.4 bits (233), Expect = 8.100e-20 Identity = 52/171 (30.41%), Postives = 89/171 (52.05%), Query Frame = 1
BLAST of Spo27055.1 vs. TAIR (Arabidopsis)
Match: AT5G19750.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein) HSP 1 Score: 77.0 bits (188), Expect = 1.300e-14 Identity = 48/185 (25.95%), Postives = 95/185 (51.35%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo27055.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo27055.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo27055.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo27055.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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