Spo26918 (gene) | SpinachBase

Overview


Name	Spo26918
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	SecE/sec61-gamma subunit of protein translocation complex protein
Location	chr6 : 32845631 .. 32848222 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTACCATTTCTACCCTTACATCACATCCCCTCCCTCCCCCCGCGGCCCTCCCCCCTCACTCTTTCACTCAGTTAACTCCAACCACAACCATAACCATAACGACCCAGACTCACCCTACCCCCGCCATCACCGCCACTCACCCGAAGCCCTAAATTCGGAAATTGAATATGATTATACTTTTATTAACCTAAATTAGGTTTTCAATTAGTAACGATTAACAGTTTGTTCTTGCTATTTCCAGGGAATTTCAATTGTTTTGGCTTGTTGCTGATAGAAATGGCTACTTTTTCTGGGATGTTGTCAAATTCTTCAGGTACCAACCTCATATATTCTAAAAATCACTGGTTTTGCTGAATTTTTTTGAATAGTTGTATGGAAGACATTGAAAAAATTCTCACTGTGCTTTCTATTTAATGTAGTTTTGGGTTATAATAATGGCAATCCAATGCTTTCATTTCGAAATCGAATGTCGATTGAAGCCAACACTGGGGGCTTGGTTACTTGTAAATTTGTACCAAAATGGGTAATTATTTGTCTAATTATTCTATTGATTATGATTTCTCTAAGCATATTAGTGTTTTGTATGGATTTTTTAAGTTGCCTATCTTTATATATTGCTAGGATTTAAGGGCAGAGATCCATTATTCTCACAAGAAGCAGGTTCGACCCCGGTTTTCGATGTCTAGGGGAGGAAACTATGGTTTAAAGTTTGATGATGAGTGTGATGATGACCCATTTTGGCTACATTTCTCTAAAGAAACAATCAGGTATTAGGATTAGACACAATTGTGTGGATTCTGGTTTCATACTGGGGTTGAGACTTGAGATAAGTAGTACTAGTAGCCTGTAATTGTACTGAGTTGTTTGTTGTGCCGTATTCTTCTCAGGGGTTTGAAATCATTGGTTGCGTTCCTTGTTCATCAACCTGGGCAGCTGAAGTACATAGAATGGCCGAGTTTTAAGGATACGGTACAATCCTTGCCTAATGTTGGATACATTTTTGTTTATTGCATTTTATTTGCTTCTGTAGAATAGTTTAGGCCTTGTTCATATTAAACAGATACTTGTCTGAATTGTGGTAGTATAATTGCCTATGTTATTTAACTTCAAATAGAAGTAATTGAATCAGAAATTCAGAATATGTAAATTATCAGCTCAATATGCCAACAAGATGCATAATAGTATAATACTTCTATTTTAACATAGTCTAGTCTCTTAGTACTCGTACATGAAAGTCCATAGATGTTGGAGTTTCCAGGACATCGTATCTCTCAAAACCTTTGGCAAATTTTCTGTGTAATTTTGTTATATACAGAGCATACCGCAATTTGATGCTGCAGTGGAATGATTAGACCTTGCTGGGGTTGAACTTGTTGTAAAATTTGTTTGAATATGTTCTTGAAATATGTTGACAAAAGACTTGGAATGCAAACTTGGGAGCTCTATTAACTTGGTTTTTCTTGGGTACAAACCTACAAATTTTTGCTATATATCTCATTGGTACTTTTAGTGTAATTCCCATGGAAACAATGTAGTTTGTTTGAGATCTACGGGACATCATCTCATCATATTGCCTTAGACTCGTGAGTCTAAGAGCAGCACTGTAAGTGCCTTGTTGATTATATTTCATTTCCTTATTCCAAACCAAGCCCTTCTCGAAGAGCATGATTTCAATTTAATTGTATCAACTTGGTGTGTTCGGAATATGTCGACATTGGTATAGTAATGTCGTTGTTTGGTTACAGAGATGCATAATTATACACAACAGTCTTGAGTATTTTCTTTTTTCTTCTCTTCTCTCCCAATAATGGCTTTGTGCCTGGACATGCTTGCAAAATTACTTGGGTTATTTTCTATGATGTTTTAACTCCTTTCTGTTGTTAGAAAGCATTATTGTATGACTTTGACTGAACAAAGGGACCCTAGATTGCCTATCAAGAACCTGTAAGTCTAATGCCTAGGCCTTGTTTGAACATTGTGCCATAGAAAGCAGTAAAGTGGTGCATATAAAAAGTCCGAAATCTAACCTAGCCTAACCTAACATTTGGTACCTGATGTATTGATCAAGAATTAAGATGCTTGATTGCTTGTTTGTGTCAAAAGCATGCGTTTCATTAGGGGAGTTTTAATCTAATCTCGTTTTGTTTTTGGTTGCAGCTGCGAACTGCCACCCTCACCCTTGTACTTGTTGCCGGGCTGATTGTTGCCTTGTCTTCAATTGATGCTGCACTTTCTTATGTGTTGGCACTACTTCTGCAAAAACCTGCATGATGCAACCTGATTTGGTTTCGGCTCTAGCTTTTCTGACAGACAACACTGATTTTACCAGTAGCGTCAACAGAATTTCATCTTCGTGAGGCTCAACTTGATAGATTTAAGATCAATGTACATTGTAGACTAGTCAACTAGGACAAAGGGCTTTGGTAAAAGTATGCTGAAGTTCGATCTTGTCTGTCATCGTTTTGATTTGCCATTTATAAAGCAATTTGGTTTGATCACTATTGGCATATGTCTTTGTCTTCTAGCCTATTCCAATCTACTCCGGATAACATACTTCTACCTCGTATTTCCTACCATTAAAGTATATACGTA

mRNA sequence

TTACCATTTCTACCCTTACATCACATCCCCTCCCTCCCCCCGCGGCCCTCCCCCCTCACTCTTTCACTCAGTTAACTCCAACCACAACCATAACCATAACGACCCAGACTCACCCTACCCCCGCCATCACCGCCACTCACCCGAAGCCCTAAATTCGGAAATTGAATATGATTATACTTTTATTAACCTAAATTAGGTTTTCAATTAGTAACGATTAACAGTTTGTTCTTGCTATTTCCAGGGAATTTCAATTGTTTTGGCTTGTTGCTGATAGAAATGGCTACTTTTTCTGGGATGTTGTCAAATTCTTCAGTTTTGGGTTATAATAATGGCAATCCAATGCTTTCATTTCGAAATCGAATGTCGATTGAAGCCAACACTGGGGGCTTGGTTACTTGTAAATTTGTACCAAAATGGGATTTAAGGGCAGAGATCCATTATTCTCACAAGAAGCAGGTTCGACCCCGGTTTTCGATGTCTAGGGGAGGAAACTATGGTTTAAAGTTTGATGATGAGTGTGATGATGACCCATTTTGGCTACATTTCTCTAAAGAAACAATCAGGGGTTTGAAATCATTGGTTGCGTTCCTTGTTCATCAACCTGGGCAGCTGAAGTACATAGAATGGCCGAGTTTTAAGGATACGCTGCGAACTGCCACCCTCACCCTTGTACTTGTTGCCGGGCTGATTGTTGCCTTGTCTTCAATTGATGCTGCACTTTCTTATGTGTTGGCACTACTTCTGCAAAAACCTGCATGATGCAACCTGATTTGGTTTCGGCTCTAGCTTTTCTGACAGACAACACTGATTTTACCAGTAGCGTCAACAGAATTTCATCTTCGTGAGGCTCAACTTGATAGATTTAAGATCAATGTACATTGTAGACTAGTCAACTAGGACAAAGGGCTTTGGTAAAAGTATGCTGAAGTTCGATCTTGTCTGTCATCGTTTTGATTTGCCATTTATAAAGCAATTTGGTTTGATCACTATTGGCATATGTCTTTGTCTTCTAGCCTATTCCAATCTACTCCGGATAACATACTTCTACCTCGTATTTCCTACCATTAAAGTATATACGTA

Coding sequence (CDS)

ATGGCTACTTTTTCTGGGATGTTGTCAAATTCTTCAGTTTTGGGTTATAATAATGGCAATCCAATGCTTTCATTTCGAAATCGAATGTCGATTGAAGCCAACACTGGGGGCTTGGTTACTTGTAAATTTGTACCAAAATGGGATTTAAGGGCAGAGATCCATTATTCTCACAAGAAGCAGGTTCGACCCCGGTTTTCGATGTCTAGGGGAGGAAACTATGGTTTAAAGTTTGATGATGAGTGTGATGATGACCCATTTTGGCTACATTTCTCTAAAGAAACAATCAGGGGTTTGAAATCATTGGTTGCGTTCCTTGTTCATCAACCTGGGCAGCTGAAGTACATAGAATGGCCGAGTTTTAAGGATACGCTGCGAACTGCCACCCTCACCCTTGTACTTGTTGCCGGGCTGATTGTTGCCTTGTCTTCAATTGATGCTGCACTTTCTTATGTGTTGGCACTACTTCTGCAAAAACCTGCATGA

Protein sequence

MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQVRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSFKDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo26918.1	Spo26918.1	mRNA

Homology

[Close]

BLAST of Spo26918.1 vs. NCBI nr
Match: gi|902203878|gb|KNA14718.1| (hypothetical protein SOVF_105000 [Spinacia oleracea])

HSP 1 Score: 320.9 bits (821), Expect = 1.300e-84
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 1


		  
Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ
Sbjct: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRPRFSMSRGG YGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF
Sbjct: 61  VRPRFSMSRGGKYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA
Sbjct: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 160

[Close]

BLAST of Spo26918.1 vs. NCBI nr
Match: gi|902228858|gb|KNA21289.1| (hypothetical protein SOVF_044480 [Spinacia oleracea])

HSP 1 Score: 293.1 bits (749), Expect = 2.900e-76
Identity = 146/160 (91.25%), Postives = 151/160 (94.38%), Query Frame = 1


		  
Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MATFSG+ SNSSVLGYNNGNPMLSFR RMSIEANT GLVTCKFVPKWDLR+EIHYSHKKQ
Sbjct: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           V+PRFSMSRGGNYGLKFDDEC +DPFWL FSKETIRGLKSLV FLV QPGQLKYIEWPSF
Sbjct: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
            DTLRTATLTLVLVAGLIVALSSIDA LSYVLALLL+KPA
Sbjct: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 160

[Close]

BLAST of Spo26918.1 vs. NCBI nr
Match: gi|731357643|ref|XP_010690320.1| (PREDICTED: uncharacterized protein LOC104903888 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 226.5 bits (576), Expect = 3.300e-56
Identity = 115/160 (71.88%), Postives = 134/160 (83.75%), Query Frame = 1


		  
Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MAT SG+LSNSSVL   N NPMLSF   MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 70  MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 129

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRP F+MSRGG+YGLKFD+E D+DPFW+H+SKETIRGLK+L+AFLV QPGQLKYIEWPSF
Sbjct: 130 VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 189

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           +DTL TA+LTLVLVA LIVALSS+D+ALS+VLALL++KPA
Sbjct: 190 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 229

[Close]

BLAST of Spo26918.1 vs. NCBI nr
Match: gi|870849088|gb|KMT01351.1| (hypothetical protein BVRB_9g213650 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 226.5 bits (576), Expect = 3.300e-56
Identity = 115/160 (71.88%), Postives = 134/160 (83.75%), Query Frame = 1


		  
Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MAT SG+LSNSSVL   N NPMLSF   MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 1   MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRP F+MSRGG+YGLKFD+E D+DPFW+H+SKETIRGLK+L+AFLV QPGQLKYIEWPSF
Sbjct: 61  VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           +DTL TA+LTLVLVA LIVALSS+D+ALS+VLALL++KPA
Sbjct: 121 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 160

[Close]

BLAST of Spo26918.1 vs. NCBI nr
Match: gi|731357645|ref|XP_010690322.1| (PREDICTED: uncharacterized protein LOC104903888 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 226.5 bits (576), Expect = 3.300e-56
Identity = 115/160 (71.88%), Postives = 134/160 (83.75%), Query Frame = 1


		  
Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MAT SG+LSNSSVL   N NPMLSF   MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 62  MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 121

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRP F+MSRGG+YGLKFD+E D+DPFW+H+SKETIRGLK+L+AFLV QPGQLKYIEWPSF
Sbjct: 122 VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 181

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           +DTL TA+LTLVLVA LIVALSS+D+ALS+VLALL++KPA
Sbjct: 182 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 221

[Close]

BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5D4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105000 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 9.100e-85
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 1


		  
Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ
Sbjct: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRPRFSMSRGG YGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF
Sbjct: 61  VRPRFSMSRGGKYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA
Sbjct: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 160

[Close]

BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQX4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_044480 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.000e-76
Identity = 146/160 (91.25%), Postives = 151/160 (94.38%), Query Frame = 1


		  
Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MATFSG+ SNSSVLGYNNGNPMLSFR RMSIEANT GLVTCKFVPKWDLR+EIHYSHKKQ
Sbjct: 1   MATFSGLSSNSSVLGYNNGNPMLSFRYRMSIEANTRGLVTCKFVPKWDLRSEIHYSHKKQ 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           V+PRFSMSRGGNYGLKFDDEC +DPFWL FSKETIRGLKSLV FLV QPGQLKYIEWPSF
Sbjct: 61  VQPRFSMSRGGNYGLKFDDECAEDPFWLRFSKETIRGLKSLVRFLVQQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
            DTLRTATLTLVLVAGLIVALSSIDA LSYVLALLL+KPA
Sbjct: 121 NDTLRTATLTLVLVAGLIVALSSIDAGLSYVLALLLRKPA 160

[Close]

BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIT5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g213650 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.300e-56
Identity = 115/160 (71.88%), Postives = 134/160 (83.75%), Query Frame = 1


		  
Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MAT SG+LSNSSVL   N NPMLSF   MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 70  MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 129

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRP F+MSRGG+YGLKFD+E D+DPFW+H+SKETIRGLK+L+AFLV QPGQLKYIEWPSF
Sbjct: 130 VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 189

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           +DTL TA+LTLVLVA LIVALSS+D+ALS+VLALL++KPA
Sbjct: 190 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 229

[Close]

BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EEG3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g213650 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.300e-56
Identity = 115/160 (71.88%), Postives = 134/160 (83.75%), Query Frame = 1


		  
Query: 1   MATFSGMLSNSSVLGYNNGNPMLSFRNRMSIEANTGGLVTCKFVPKWDLRAEIHYSHKKQ 60
           MAT SG+LSNSSVL   N NPMLSF   MS EA T GL+T KFVPKW  R +I     + 
Sbjct: 1   MATVSGLLSNSSVLSLKNDNPMLSFGYSMSTEATTTGLITVKFVPKWKSRCKIRSLRMEW 60

Query: 61  VRPRFSMSRGGNYGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSF 120
           VRP F+MSRGG+YGLKFD+E D+DPFW+H+SKETIRGLK+L+AFLV QPGQLKYIEWPSF
Sbjct: 61  VRPLFAMSRGGSYGLKFDNEDDEDPFWVHYSKETIRGLKTLLAFLVQQPGQLKYIEWPSF 120

Query: 121 KDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQKPA 161
           +DTL TA+LTLVLVA LIVALSS+D+ALS+VLALL++KPA
Sbjct: 121 QDTLWTASLTLVLVAALIVALSSLDSALSFVLALLVRKPA 160

[Close]

BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Match: A0A061DZS8_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_006567 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.400e-24
Identity = 64/102 (62.75%), Postives = 79/102 (77.45%), Query Frame = 1


		  
Query: 58  KKQVRPRFSMSRGGN-YGLKFDDECDDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIE 117
           +K    R  MS G N + L FDDE  ++PFWL   +++I G++SL AFLV QPGQLKYIE
Sbjct: 54  RKPYMSRHVMSVGSNRHQLSFDDELPEEPFWLSLIRDSIWGVRSLFAFLVEQPGQLKYIE 113

Query: 118 WPSFKDTLRTATLTLVLVAGLIVALSSIDAALSYVLALLLQK 159
           WPSF+ TL+TATLTLVLVA LIVALSS+D+ L YVLALLL++
Sbjct: 114 WPSFQSTLKTATLTLVLVAMLIVALSSVDSVLCYVLALLLRR 155

[Close]

BLAST of Spo26918.1 vs. TAIR (Arabidopsis)
Match: AT4G38490.1 (unknown protein)

HSP 1 Score: 91.3 bits (225), Expect = 5.900e-19
Identity = 43/77 (55.84%), Postives = 60/77 (77.92%), Query Frame = 1


		  
Query: 82  DDDPFWLHFSKETIRGLKSLVAFLVHQPGQLKYIEWPSFKDTLRTATLTLVLVAGLIVAL 141
           +++P WL   ++ +   +SL++F+  QP QLKYIEWP+F  TL+TATL+L LVA  IVAL
Sbjct: 75  EEEPLWLSLLRDMVWSTRSLLSFMAEQPSQLKYIEWPTFASTLKTATLSLCLVAVFIVAL 134

Query: 142 SSIDAALSYVLALLLQK 159
           SS+DAAL Y+LAL+L+K
Sbjct: 135 SSVDAALCYILALILRK 151

The following BLAST results are available for this feature:

BLAST of Spo26918.1 vs. NCBI nr
BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
BLAST of Spo26918.1 vs. ExPASy Swiss-Prot
BLAST of Spo26918.1 vs. TAIR (Arabidopsis)

BLAST of Spo26918.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902203878\|gb\|KNA14718.1\|	1.3e-84	99.3	hypothetical protein SOVF_1050...	[more]
gi\|902228858\|gb\|KNA21289.1\|	2.9e-76	91.2	hypothetical protein SOVF_0444...	[more]
gi\|731357643\|ref\|XP_010690320.1\|	3.3e-56	71.8	PREDICTED: uncharacterized pro...	[more]
gi\|870849088\|gb\|KMT01351.1\|	3.3e-56	71.8	hypothetical protein BVRB_9g21...	[more]
gi\|731357645\|ref\|XP_010690322.1\|	3.3e-56	71.8	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo26918.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R5D4_SPIOL	9.1e-85	99.3	Uncharacterized protein OS=Spi...	[more]
A0A0K9RQX4_SPIOL	2.0e-76	91.2	Uncharacterized protein OS=Spi...	[more]
A0A0J8BIT5_BETVU	2.3e-56	71.8	Uncharacterized protein OS=Bet...	[more]
A0A0J8EEG3_BETVU	2.3e-56	71.8	Uncharacterized protein OS=Bet...	[more]
A0A061DZS8_THECC	1.4e-24	62.7	Uncharacterized protein isofor...	[more]

BLAST of Spo26918.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo26918.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G38490.1	5.9e-19	55.8	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	PFAM	PF00584	SecE	coord: 111..155 score: 7.
IPR022943	Preprotein translocase subunit SecE	HAMAP	MF_00422	SecE	coord: 99..154 score: 10
None	No IPR available	GENE3D	1.20.5.1030		coord: 102..156 score: 9.
None	No IPR available	PANTHER	PTHR37247	FAMILY NOT NAMED	coord: 69..160 score: 4.0
None	No IPR available	PANTHER	PTHR37247:SF1	SUBFAMILY NOT NAMED	coord: 69..160 score: 4.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006605	protein targeting
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0006457	protein folding
biological_process	GO:0010608	posttranscriptional regulation of gene expression
biological_process	GO:0010286	heat acclimation
biological_process	GO:0019295	coenzyme M biosynthetic process
biological_process	GO:0071422	succinate transmembrane transport
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0019375	galactolipid biosynthetic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0019432	triglyceride biosynthetic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0010119	regulation of stomatal movement
biological_process	GO:2000377	regulation of reactive oxygen species metabolic process
biological_process	GO:0010359	regulation of anion channel activity
biological_process	GO:0048366	leaf development
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0040007	growth
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0007165	signal transduction
biological_process	GO:0009788	negative regulation of abscisic acid-activated signaling pathway
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0080090	regulation of primary metabolic process
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0009657	plastid organization
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009911	positive regulation of flower development
biological_process	GO:0010229	inflorescence development
biological_process	GO:0048825	cotyledon development
biological_process	GO:0010540	basipetal auxin transport
biological_process	GO:0045176	apical protein localization
biological_process	GO:0048513	animal organ development
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0048731	system development
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0044206	UMP salvage
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0046786	viral replication complex formation and maintenance
biological_process	GO:0016310	phosphorylation
biological_process	GO:0000272	polysaccharide catabolic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0044211	CTP salvage
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0071805	potassium ion transmembrane transport
biological_process	GO:0010118	stomatal movement
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006571	tyrosine biosynthetic process
biological_process	GO:0000162	tryptophan biosynthetic process
biological_process	GO:0009094	L-phenylalanine biosynthetic process
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0006508	proteolysis
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009705	plant-type vacuole membrane
cellular_component	GO:0005770	late endosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0008076	voltage-gated potassium channel complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004849	uridine kinase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0004871	obsolete signal transducer activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0008047	enzyme activator activity
molecular_function	GO:0009931	calcium-dependent protein serine/threonine kinase activity
molecular_function	GO:0019903	protein phosphatase binding
molecular_function	GO:0015141	succinate transmembrane transporter activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005488	binding
molecular_function	GO:0016161	beta-amylase activity
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004834	tryptophan synthase activity
molecular_function	GO:0008194	UDP-glycosyltransferase activity
molecular_function	GO:0032440	2-alkenal reductase [NAD(P)] activity
molecular_function	GO:0022857	transmembrane transporter activity
molecular_function	GO:0005249	voltage-gated potassium channel activity
molecular_function	GO:0004683	calmodulin-dependent protein kinase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21350	0.73	Barchart \| Table
Spo17044	0.72	Barchart \| Table
Spo22363	0.71	Barchart \| Table
Spo13317	0.71	Barchart \| Table
Spo01773	0.70	Barchart \| Table
Spo25582	0.70	Barchart \| Table
Spo01726	0.70	Barchart \| Table
Spo09180	0.70	Barchart \| Table
Spo19728	0.70	Barchart \| Table
Spo15447	0.70	Barchart \| Table
Spo22879	0.69	Barchart \| Table
Spo26739	0.69	Barchart \| Table
Spo26919	0.69	Barchart \| Table
Spo16345	0.69	Barchart \| Table
Spo13141	0.69	Barchart \| Table
Spo14655	0.69	Barchart \| Table
Spo17049	0.68	Barchart \| Table
Spo05496	0.68	Barchart \| Table
Spo06240	0.68	Barchart \| Table
Spo01448	0.67	Barchart \| Table
Spo08753	0.67	Barchart \| Table
Spo16828	0.67	Barchart \| Table
Spo12853	0.66	Barchart \| Table
Spo05067	0.66	Barchart \| Table
Spo26790	0.66	Barchart \| Table
Spo09821	0.66	Barchart \| Table
Spo23463	0.66	Barchart \| Table
Spo07180	0.66	Barchart \| Table
Spo11923	0.65	Barchart \| Table
Spo25803	0.65	Barchart \| Table
Spo02554	0.65	Barchart \| Table
Spo27198	0.65	Barchart \| Table
Spo16829	0.65	Barchart \| Table
Spo28146	0.65	Barchart \| Table
Spo18357	0.65	Barchart \| Table
Spo19452	0.65	Barchart \| Table
Spo20345	0.65	Barchart \| Table
Spo12390	0.65	Barchart \| Table
Spo22159	0.65	Barchart \| Table