Spo26671 (gene)

Overview
NameSpo26671
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionGlycyl-tRNA synthetase
LocationSpoScf_04339 : 1640 .. 6542 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATACTCACACTGCCATTAGTAATCTCTGTCCTCAAACCCCATAACTATAAACCCCAGAATTTCTCTTTTATTCTTCACCCAACTCGTCATTTTTGCTTTAAACCCCTCCATCGTCGCTTTTTTGCCTCTTCAAGTGCCGGCGCTTCCACTTTGCAGCACAACTTTTCCGACAATGGCGACCCCAATTCAGTTCCTAGTACTGCCTCTGTGCCCACTTTTCAACAAGCCATTCAGCGGCTTCAGGTTTTCTTCAAATTCTCTCTCTTTTGACTTTTGGGTCATACTTCAATAAAGTCTTTGATCTTTCATTGTTGCCAATATAAATATGGAAATGTTATGACTTAGCTCTTACTTGATTCATCGCAATGTATATTTTAATTCATCCAAGTTTATGATTTTTACTAGCATGCAATTAAAGATATTAATGTTCGAAAACAGTGTTTGGAGACAATGTAAGTCAATCAGGAAGCTCATTTGGAAATGGAGAAGTAGTGTATTAGTATGTAAAATGATTGTATTAATCTAATTAGAAAATATTGGTTTTGGTACTTACTCTCATTAGAGTGATCTTTGAAATGCTAGTTTCCTGAATAAATTATGGTGTCTTATCTCCTTAGGATTTCAGACTAAGGGAGTGATGTTATAGACTAAGGGAGTGATGTTATGCAATTGGGATAATATATATCTTAGTTGGGGTGATTGGACGTATGAAACCTTTGGGTTTCTTTGAAGTTTCGCATTTTCTTTCGTTGGGGAACCTAGATCATTTGTTGTAGGGGCAAAGAGAAGCTATACATCAAGAAGTGTTAATGGACTGCTTTTTCTATGATTGTCCTTCTTCTCGGATGTGAATTGGTTTAGTTTGTGAGTCTTGGGGCATTAGGCGTGGGTGACAAACCAATAAAAGGCACCATCTTGCTGCGTGGGTGTCTACCTTTGAAAATATCTGCAATAATGCCTTAAAGAATTTGATTGTGGCCTAACGTGTTTCCTGGATATAATAGACCGTTTGATTCACTTTAATATTTGGGAAAGCAAATTGGGTAAATGATTACACGAGGATAGATGGCCATGAAAGTATAGAATAGGACTAGAAGTTAAGGCTGTCAAACGTGTTGTTTCTTAGGACTTTGGATATCTCTAGTTTATGTGTGAAAAAACCTTGATGGCCATGGAGGTGTTAGGGGATAGTAGTTACGGATTCCTAGAACAAAAACAAAATCCTACTGTGAACTGCTGCTTGCTGAGCCTGGAAGTCATTTTGATCCATGAAGTAATTGAGAACTTGTTCTATATCTAAAACAGTGGTTGCTACCAGACCATGCCTTCATTGTCATGATCATAGAAATACAAATGGTTCAAAGTGTTAGTGTAGTGTGTCAGACCTAACAAAGCCAGAACCCTCTTTTATTGAAGATCCGAACATTACATTTCCTCGAAAAGATTGGAAACAGTCAGCGATGTCCTTGCAGTTTTATCTTTTAAGGTTCTCGATGGATCTGAAAAATATATGTATTATATTTGAAGGGAAGGACAATGTAGTGAAGCATTTAATTTCATCTGTTAATAATCTCTTATCTAGTGACTCTTCCAGCTTAAATTACTAAGCTTTTGGGATATGTGATATGTATGCATTTTAGTTAACCAAACAATTGAGAGGTAACTATGCAGTTTATTCTTTTATCCAGATTAAAGCTGAATAATGGCAACTGTTTCAGTTCTATCTGTCATTTAAAGACAATACTGTATCCCTTTCTATCAAGTATTTCATTTCCCTGAGAGACAATAACTGTTTGAACTTTTAAGCATTATTCTACCAAAAGTACGGCACCAAAGCTCAGAAAGTCATTCTTGGTGATGGTTTTGACAACAAATTCAGCATCTATGCTTTTCTCTTTCGGGGTCAAGTAATTATATAAATTAAATAGTGATCTGATCATAGGATGTCTATTGCCCCTTCCTGAATTAGTTATTTTGAGTTTGGACATTGAATTCCATTCACATATGACTGGTATTTTTTTCACGTCATTTCATTTTTTGGTACCTGCAGGAATATTGGGCTTCTGTTGGGTGTGCAGTTATGCAATGCAGCAACACTGAGGTAATCATCTTAATTTTCTGTACAAAAGCAGATTCTTTCTGTGGTTTGCACCTTCTTTGTTTAACACCTTCTGTTAGGGTGTCCCCACTTGGTGCATGCAGTGGGTTTGAAATACATGTAACTTTTTCCCCCATGATGGCTTTCATAAAACAGATACAAATGTTACTCCCAGAACATTTATACAAAAAAGACAATTTATTCTTGTTACTTTCTTTGGTGCTTTTACTTCTTAAATGTTTATAGCTTATCCGAGTTTTTTCTTTGCCTTTGAGATACTTCATTGAGCTCCTTGCATTTCTCAGGTTGGAGCTGGGACGATGAATCCCCTGACATATCTGAGGGTCCTTGGTCCAGAGCCATGGAATGTTGCGTAAGTATACACTAAGAACATTTTGTGTAGCTGTTCCTTTTTTTTTTTGGGCCTAGGTGGTACAAAATGTTTTATCATTTTTGATTCAATGTTTATCATTTTAGTTCCTGCCATCCTTCCGCTATATATATTTGCATCTTAGAAAAGCTTTGTGCTAAAAGGTGAATTTAATCATTATATCTTTTCTGAATGAGTAAAGTGAACTCATACTACTAAAATGGAGTTGTATATGTCATGGACGCCTTACAGCAGAAATATTTTTGGTTTGTCCTGATGCATCTACTACGTTTGCTAGAATCTTAAAATCGAACTCCTTACATGTTTGCACCCCTTAGTTTGAGGTTCTTGGTTTATGGTAGGATATTGAGATTGTTATTCAGGAGAGACAAAGTCCAATTGAGAAGCAAAGGCTTAATCATTTGGTATATGGTAGATTTACGTTTATTTTTCTTTTGCTTATTTTTTTTTAATATTTATTAAGTTGGTGGCATGTGCTACGTACTGGTTCAAAAATCTTATACAAATTTCCTTTTTTTCAAAAAAATATGATTCAGTAATGACATAGTTAAACTACTAAAGATTATACATCCTCCATTCTTTACTTGCAACCCAGTGGGATGGAACAAAACCGAAGGAAAAGTTGATAAGAAGTCAAAATCCCAAATTTGCCTGCCCAATAATTATTCTCTCTCTCCTCCTTACCAGCCCCATCCAACCAAGAATCTACCATTTTCTCCACCAACCCACCTCCCAAATTTTCCTGCACAACAATTACTCTCTCTCTCCCCCTTACCAGCCCCATCCAACCGACAATCTACCATTTTCTCGACCAATCCACCTCCCACCTGATATAGGCCAACCACCAGTTCACTGTCTTATCCCACCACCCACCCATCCACCTCTTAAGAATATTAGTGCTTGCCATACTTTGGTGCAATGTCTTTCTAGTGATTTCAATAATAAATATCTTCTCTTATGGATGGTTGCAATAGTTCAATGGGAAGTGTTTGCACATGTTTAGATGTTGACCTTATATATCGAATTTCGGTGTCAATTAATGGAAGAGGGTGAATTCCTTCTGACATGTCAGTTTCTGAGGACATGACTCATGCCACAATTCACAATAACTGGTGATGAATGCAGTAAGATATGGTCATGCCCGTAAGAGATTTATCTTGCATCTTCATCATGGCATCCACTATGGAGTTGTAGCTGTTTCTGTTTTCCTGTGATTTCTATTGAAATTCATCTGTTATGTAGGTTGCTCTAGCATTGATATGAGTTTCTTTTGGAAAGTTATGTAGAGCCTAGCATCCGGCCTGACGATAGTCGCTATGGGGAAAATCCAAACCGTCTTCAACGCCACACCCAATTTCAGGTAGAGCTTTTATTATTAATGTATCCTAACAAGAAAAACATGTGAGTCTTGAAAAACATTCCTTTTATGGGTTTTAAGTGAATTATTACTCCTATTTGGAGTTTGATCTCAGGTTATATTGAAACCAGATCCTGGGAATTCTCAAGATCTCTTCATCCGGAGCCTATCTGCTTTAGGTAGCTATTTTAATTTGTTTCTCTTTCTGTACTTGTTAGTTATCTTACTGAGCCAAAAACATCGTTCACGCGTGAGGTAGGCTAGAGCCACAAAAAGGCCCTCAGATCATCTTTTGTAATTTCACATAACAATCAGGAGGAGATGAGGGTCACCTGGATGCAACATTTAACTCCAAAATACGACCTCGCCAAAAAATAAAAAATGAAAATAATGATAGCAATATGTGAACAAGCTCTGTCCTTAAATATCCTCTGCTTTTTTCTTCTTTTCATGCACACCATCAAGTCAGAAACAGTGATCCAAACCTACTTCATTCTTTTTTTCCTTGCCTCAAATCCAAATGAGGTTGAACCCAATTCAACCTAGATAAACAAAGGATAGTTACCAAAGACAAAGAGAAAGGGTTACACTTACCTTTTGATTGTTAGAAAAATAGCAACCATGAGCTATTTGGTGCACATTGAAGGTTTTGTTGTTGTTTTGGTGCTCATATAGATTCCCATCGTACCATCTCTGTCTTAGTTATCCTTTTTTGCATCATTTCAGGTGTTAATGTCAATGAACATGATATACGTTTTGTGGAGGACAACTGGGAAAGTCCGGTAATTTTTCTTTTTCACAGCTGGACCAAGCATTTCCTGAATTCTTTTGTTACGAGAGTGGAGATTATTTGGCATATGATGATGGCCTAACTGCTGTGCTTGCTGGTTGAATTTATGAAGTTCTCCGCAAGTCTGCAGTGGTGTCTCTTAGCATCTCACTGTTGTTTTACTTTGTCACTACTTATTTTTAGGTCCTTGGTGCGTGGGGATTGGGTTGGGAAGTTTGGATGGATGGGATGGAGATCACTCAATTTACGTACTTCCAGCAG

mRNA sequence

ATGGGCATACTCACACTGCCATTAGTAATCTCTGTCCTCAAACCCCATAACTATAAACCCCAGAATTTCTCTTTTATTCTTCACCCAACTCGTCATTTTTGCTTTAAACCCCTCCATCGTCGCTTTTTTGCCTCTTCAAGTGCCGGCGCTTCCACTTTGCAGCACAACTTTTCCGACAATGGCGACCCCAATTCAGTTCCTAGTACTGCCTCTGTGCCCACTTTTCAACAAGCCATTCAGCGGCTTCAGGAATATTGGGCTTCTGTTGGGTGTGCAGTTATGCAATGCAGCAACACTGAGGTTGGAGCTGGGACGATGAATCCCCTGACATATCTGAGGGTCCTTGGTCCAGAGCCATGGAATGTTGCTTATGTAGAGCCTAGCATCCGGCCTGACGATAGTCGCTATGGGGAAAATCCAAACCGTCTTCAACGCCACACCCAATTTCAGGTTATATTGAAACCAGATCCTGGGAATTCTCAAGATCTCTTCATCCGGAGCCTATCTGCTTTAGGTGTTAATGTCAATGAACATGATATACGTTTTGTGGAGGACAACTGGGAAAGTCCGGTCCTTGGTGCGTGGGGATTGGGTTGGGAAGTTTGGATGGATGGGATGGAGATCACTCAATTTACGTACTTCCAGCAG

Coding sequence (CDS)

ATGGGCATACTCACACTGCCATTAGTAATCTCTGTCCTCAAACCCCATAACTATAAACCCCAGAATTTCTCTTTTATTCTTCACCCAACTCGTCATTTTTGCTTTAAACCCCTCCATCGTCGCTTTTTTGCCTCTTCAAGTGCCGGCGCTTCCACTTTGCAGCACAACTTTTCCGACAATGGCGACCCCAATTCAGTTCCTAGTACTGCCTCTGTGCCCACTTTTCAACAAGCCATTCAGCGGCTTCAGGAATATTGGGCTTCTGTTGGGTGTGCAGTTATGCAATGCAGCAACACTGAGGTTGGAGCTGGGACGATGAATCCCCTGACATATCTGAGGGTCCTTGGTCCAGAGCCATGGAATGTTGCTTATGTAGAGCCTAGCATCCGGCCTGACGATAGTCGCTATGGGGAAAATCCAAACCGTCTTCAACGCCACACCCAATTTCAGGTTATATTGAAACCAGATCCTGGGAATTCTCAAGATCTCTTCATCCGGAGCCTATCTGCTTTAGGTGTTAATGTCAATGAACATGATATACGTTTTGTGGAGGACAACTGGGAAAGTCCGGTCCTTGGTGCGTGGGGATTGGGTTGGGAAGTTTGGATGGATGGGATGGAGATCACTCAATTTACGTACTTCCAGCAG

Protein sequence

MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDNGDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDIRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo26671.1Spo26671.1mRNA


Homology
[Close]
BLAST of Spo26671.1 vs. NCBI nr
Match: gi|902238580|gb|KNA25234.1| (hypothetical protein SOVF_008400 [Spinacia oleracea])

HSP 1 Score: 457.2 bits (1175), Expect = 1.600e-125
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1 

		  

Query: 1   MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDN 60
           MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDN
Sbjct: 1   MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDN 60

Query: 61  GDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW 120
           GDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW
Sbjct: 61  GDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW 120

Query: 121 NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDI 180
           NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDI
Sbjct: 121 NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDI 180

Query: 181 RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ
Sbjct: 181 RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 216
[Close]
BLAST of Spo26671.1 vs. NCBI nr
Match: gi|731347800|ref|XP_010685169.1| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 420.2 bits (1079), Expect = 2.100e-114
Identity = 199/216 (92.13%), Postives = 208/216 (96.30%), Query Frame = 1 

		  

Query: 1   MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDN 60
           MGILTLPLVISVLKPHNYKPQNFS I  PTR FCFKP +RRFFASS+AGASTLQ+  S+N
Sbjct: 1   MGILTLPLVISVLKPHNYKPQNFSLIFCPTRQFCFKPFNRRFFASSNAGASTLQNTISNN 60

Query: 61  GDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW 120
           G+P+SV +T+SVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW
Sbjct: 61  GEPSSVHTTSSVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW 120

Query: 121 NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDI 180
           NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGV+VNEHDI
Sbjct: 121 NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVDVNEHDI 180

Query: 181 RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ
Sbjct: 181 RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 216
[Close]
BLAST of Spo26671.1 vs. NCBI nr
Match: gi|359489209|ref|XP_002270774.2| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Vitis vinifera])

HSP 1 Score: 337.8 bits (865), Expect = 1.400e-89
Identity = 165/222 (74.32%), Postives = 183/222 (82.43%), Query Frame = 1 

		  

Query: 1   MGILTLPLVISVLKPHN------YKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQ 60
           M IL +PLV+SVLKPH+      ++ +N S +  P       PL       ++   S + 
Sbjct: 1   MAILAIPLVVSVLKPHHSLHFSFFRSRNSSRLCSPFTRI--SPLRSSKTTIAAITTSAIP 60

Query: 61  HNFSDNGDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRV 120
           HN S   DPN+  + ASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLT+LRV
Sbjct: 61  HNSST--DPNTDSNKASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTFLRV 120

Query: 121 LGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVN 180
           LGPEPWNVAYVEPSIRPDDSR+GENPNRLQRHTQFQVILKPDPGNSQDLF+RSLSALG+N
Sbjct: 121 LGPEPWNVAYVEPSIRPDDSRFGENPNRLQRHTQFQVILKPDPGNSQDLFLRSLSALGIN 180

Query: 181 VNEHDIRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           +NEHDIRFVEDNWESPVLGAWGLGWE+WMDGMEITQFTYFQQ
Sbjct: 181 INEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQ 218
[Close]
BLAST of Spo26671.1 vs. NCBI nr
Match: gi|970000909|ref|XP_015055657.1| (PREDICTED: glycine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1 [Solanum pennellii])

HSP 1 Score: 337.0 bits (863), Expect = 2.400e-89
Identity = 171/217 (78.80%), Postives = 180/217 (82.95%), Query Frame = 1 

		  

Query: 1   MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDN 60
           M IL LPL+ S+LKPH     +FSF+  P        LHRRFF+ SS   S L  + S +
Sbjct: 1   MAILVLPLITSILKPHK---THFSFLPLPII------LHRRFFSKSST-VSALSTSSSSH 60

Query: 61  GDPNSV-PSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEP 120
              NS     ASVPTFQQAIQRLQEYW SVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEP
Sbjct: 61  VSHNSENQKKASVPTFQQAIQRLQEYWGSVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEP 120

Query: 121 WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHD 180
           WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALG++VN HD
Sbjct: 121 WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVNAHD 180

Query: 181 IRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           IRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ
Sbjct: 181 IRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 207
[Close]
BLAST of Spo26671.1 vs. NCBI nr
Match: gi|460367768|ref|XP_004229742.1| (PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Solanum lycopersicum])

HSP 1 Score: 337.0 bits (863), Expect = 2.400e-89
Identity = 169/217 (77.88%), Postives = 180/217 (82.95%), Query Frame = 1 

		  

Query: 1   MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDN 60
           M IL LPL+ S+LKPH     +FSF+  P        LHRRFF+ SS  ++    + S +
Sbjct: 1   MAILVLPLITSILKPHK---THFSFLPLPII------LHRRFFSKSSTVSALSTSSSSSH 60

Query: 61  GDPNSV-PSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEP 120
              NS     ASVPTFQQAIQRLQEYW SVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEP
Sbjct: 61  VSHNSENQKKASVPTFQQAIQRLQEYWGSVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEP 120

Query: 121 WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHD 180
           WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALG++VN HD
Sbjct: 121 WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVNAHD 180

Query: 181 IRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           IRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ
Sbjct: 181 IRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 208
[Close]
BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S209_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_008400 PE=3 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 1.100e-125
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1 

		  

Query: 1   MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDN 60
           MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDN
Sbjct: 1   MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDN 60

Query: 61  GDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW 120
           GDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW
Sbjct: 61  GDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW 120

Query: 121 NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDI 180
           NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDI
Sbjct: 121 NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDI 180

Query: 181 RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ
Sbjct: 181 RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 216
[Close]
BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BT17_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g168730 PE=3 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 1.500e-114
Identity = 199/216 (92.13%), Postives = 208/216 (96.30%), Query Frame = 1 

		  

Query: 1   MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDN 60
           MGILTLPLVISVLKPHNYKPQNFS I  PTR FCFKP +RRFFASS+AGASTLQ+  S+N
Sbjct: 1   MGILTLPLVISVLKPHNYKPQNFSLIFCPTRQFCFKPFNRRFFASSNAGASTLQNTISNN 60

Query: 61  GDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW 120
           G+P+SV +T+SVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW
Sbjct: 61  GEPSSVHTTSSVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPW 120

Query: 121 NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDI 180
           NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGV+VNEHDI
Sbjct: 121 NVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVDVNEHDI 180

Query: 181 RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ
Sbjct: 181 RFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 216
[Close]
BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Match: K4AYW1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.700e-89
Identity = 169/217 (77.88%), Postives = 180/217 (82.95%), Query Frame = 1 

		  

Query: 1   MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDN 60
           M IL LPL+ S+LKPH     +FSF+  P        LHRRFF+ SS  ++    + S +
Sbjct: 1   MAILVLPLITSILKPHK---THFSFLPLPII------LHRRFFSKSSTVSALSTSSSSSH 60

Query: 61  GDPNSV-PSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEP 120
              NS     ASVPTFQQAIQRLQEYW SVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEP
Sbjct: 61  VSHNSENQKKASVPTFQQAIQRLQEYWGSVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEP 120

Query: 121 WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHD 180
           WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALG++VN HD
Sbjct: 121 WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVNAHD 180

Query: 181 IRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           IRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ
Sbjct: 181 IRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 208
[Close]
BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Match: A0A067K9B0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14636 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.700e-89
Identity = 166/218 (76.15%), Postives = 180/218 (82.57%), Query Frame = 1 

		  

Query: 1   MGILTLPLVISVLKPHNYKPQNFSFILHPTRHF--CFKPLHRRFFASSSAGASTLQHNFS 60
           M IL LPLV+S LKP   K  +F F+  P R    C     R+F  ++ +  ST      
Sbjct: 1   MAILALPLVVSFLKP---KTGSFCFLPLPGRSSPSCLGLNRRQFIRTTVSAISTSPVQQH 60

Query: 61  DNGDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPE 120
            +  PN+ P  ASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLT+LRVLGPE
Sbjct: 61  SSAGPNNEPQKASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTFLRVLGPE 120

Query: 121 PWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEH 180
           PWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALG++V+EH
Sbjct: 121 PWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVSEH 180

Query: 181 DIRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           DIRFVEDNWESPVLGAWGLGWE+WMDGMEITQFTYFQQ
Sbjct: 181 DIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQ 215
[Close]
BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Match: A0A067HCB2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001359mg PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 9.100e-88
Identity = 165/217 (76.04%), Postives = 175/217 (80.65%), Query Frame = 1 

		  

Query: 1   MGILTLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQH-NFSD 60
           M IL LPL IS+LKP       F         FC  PL RR F  +S  A T        
Sbjct: 1   MAILALPLAISILKPRASHLSFFCAGNPSPSWFCLSPLCRRQFHRTSVCAITTSAIQEPP 60

Query: 61  NGDPNSVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEP 120
           + +PN+    ASVPTFQQAIQRLQEYWASVGC+VMQCSNTEVGAGTMNPLT+LRVLGPEP
Sbjct: 61  STEPNNERQKASVPTFQQAIQRLQEYWASVGCSVMQCSNTEVGAGTMNPLTFLRVLGPEP 120

Query: 121 WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHD 180
           WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALG++V EHD
Sbjct: 121 WNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTEHD 180

Query: 181 IRFVEDNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           IRFVEDNWESPVLGAWGLGWE+WMDGMEITQFTYFQQ
Sbjct: 181 IRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQ 217
[Close]
BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Match: SYGM2_ARATH (Glycine--tRNA ligase, chloroplastic/mitochondrial 2 OS=Arabidopsis thaliana GN=EDD1 PE=1 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.300e-84
Identity = 157/212 (74.06%), Postives = 170/212 (80.19%), Query Frame = 1 

		  

Query: 5   TLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDNGDPN 64
           +LPL++S L+PH   P+   F L P        L RR F  +SA +S   H+ S     +
Sbjct: 7   SLPLIVSFLRPHA-SPR---FFLLPRSLSQSPFLSRRRFHRTSAVSSAAVHHQSYRNPDD 66

Query: 65  SVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAY 124
            V    SVPTFQQAIQRLQEYWASVGCAVMQ SNTEVGAGTMNP T+LRVLGPEPWNVAY
Sbjct: 67  DVTRAVSVPTFQQAIQRLQEYWASVGCAVMQPSNTEVGAGTMNPCTFLRVLGPEPWNVAY 126

Query: 125 VEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDIRFVE 184
           VEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQ LFI SLSALG++V  HDIRFVE
Sbjct: 127 VEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFVE 186

Query: 185 DNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           DNWESPVLGAWGLGWE+WMDGMEITQFTYFQQ
Sbjct: 187 DNWESPVLGAWGLGWEIWMDGMEITQFTYFQQ 214
[Close]
BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Match: SYGA_GEOLS (Glycine--tRNA ligase alpha subunit OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glyQ PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.700e-60
Identity = 103/143 (72.03%), Postives = 116/143 (81.12%), Query Frame = 1 

		  

Query: 74  TFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDD 133
           TFQ  I  LQ YWA+ GC + Q  +TE GAGT NP T+LRVLGPEPWNVAYVEPS RP D
Sbjct: 2   TFQNLILSLQNYWANQGCVIQQPYDTEKGAGTFNPATFLRVLGPEPWNVAYVEPSRRPTD 61

Query: 134 SRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDIRFVEDNWESPVLG 193
            RYGENPNRLQ + QFQVI+KP P N  DL++ SL A G+N ++HDIRFVED+WESP LG
Sbjct: 62  GRYGENPNRLQHYYQFQVIMKPSPANILDLYLDSLRAFGINPSQHDIRFVEDDWESPTLG 121

Query: 194 AWGLGWEVWMDGMEITQFTYFQQ 217
           AWGLGWEVW+DGMEITQFTYFQQ
Sbjct: 122 AWGLGWEVWLDGMEITQFTYFQQ 144
[Close]
BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Match: SYGA_MOOTA (Glycine--tRNA ligase alpha subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=glyQ PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.000e-59
Identity = 102/142 (71.83%), Postives = 115/142 (80.99%), Query Frame = 1 

		  

Query: 75  FQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDS 134
           FQ+ I  LQ +WA   C + Q  + E GAGTMNP T+LRVLGPEPW VAYVEPS RP D 
Sbjct: 3   FQELIMTLQRFWAEQNCVIQQPYDLEKGAGTMNPATFLRVLGPEPWRVAYVEPSRRPTDG 62

Query: 135 RYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDIRFVEDNWESPVLGA 194
           RYGENPNRLQ + Q+QVILKP P N QDL+++SL A+G+N  EHDIRFVEDNWESP LGA
Sbjct: 63  RYGENPNRLQHYYQYQVILKPSPDNVQDLYLQSLEAMGINPLEHDIRFVEDNWESPTLGA 122

Query: 195 WGLGWEVWMDGMEITQFTYFQQ 217
           WGLGWEVW+DGMEITQFTYFQQ
Sbjct: 123 WGLGWEVWLDGMEITQFTYFQQ 144
[Close]
BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Match: SYGA_DESDA (Glycine--tRNA ligase alpha subunit OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=glyQ PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.000e-59
Identity = 101/142 (71.13%), Postives = 117/142 (82.39%), Query Frame = 1 

		  

Query: 75  FQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDS 134
           FQ  I  LQ YWA  GC + Q S  E GAGT NP T+LRV+GPEPWNVAYVEPS RP D 
Sbjct: 3   FQDVILTLQNYWARQGCVIEQPSGVECGAGTFNPHTFLRVIGPEPWNVAYVEPSRRPTDG 62

Query: 135 RYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDIRFVEDNWESPVLGA 194
           RYGENPNRLQR+ QFQVI+KP P N QDL+++SL+ALG+N  +HDIRFVED+WESP LGA
Sbjct: 63  RYGENPNRLQRYFQFQVIMKPSPDNVQDLYLQSLNALGINPAQHDIRFVEDDWESPTLGA 122

Query: 195 WGLGWEVWMDGMEITQFTYFQQ 217
           WGLGWEVW++GME++QFTYFQQ
Sbjct: 123 WGLGWEVWLNGMEVSQFTYFQQ 144
[Close]
BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Match: SYGA_DESAG (Glycine--tRNA ligase alpha subunit OS=Desulfovibrio alaskensis (strain G20) GN=glyQ PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.700e-59
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1 

		  

Query: 75  FQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDS 134
           FQ  I  LQ +WA  GCA+ Q  ++E GAGT NP T+LRV+GPEPWNVAYVEPS RP D 
Sbjct: 3   FQDVILTLQNFWARRGCAIQQPFDSECGAGTFNPATFLRVIGPEPWNVAYVEPSRRPTDG 62

Query: 135 RYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDIRFVEDNWESPVLGA 194
           RYGENPNRLQ + QFQVILKP P N Q+++I SL ALG+N  EHDIRFVED+WESP LGA
Sbjct: 63  RYGENPNRLQHYFQFQVILKPSPDNVQEIYIDSLRALGINPAEHDIRFVEDDWESPTLGA 122

Query: 195 WGLGWEVWMDGMEITQFTYFQQ 217
           WGLGWEVW++GME+TQFTYFQQ
Sbjct: 123 WGLGWEVWLNGMEVTQFTYFQQ 144
[Close]
BLAST of Spo26671.1 vs. TAIR (Arabidopsis)
Match: AT3G48110.1 (glycine-tRNA ligases)

HSP 1 Score: 313.2 bits (801), Expect = 1.300e-85
Identity = 157/212 (74.06%), Postives = 170/212 (80.19%), Query Frame = 1 

		  

Query: 5   TLPLVISVLKPHNYKPQNFSFILHPTRHFCFKPLHRRFFASSSAGASTLQHNFSDNGDPN 64
           +LPL++S L+PH   P+   F L P        L RR F  +SA +S   H+ S     +
Sbjct: 7   SLPLIVSFLRPHA-SPR---FFLLPRSLSQSPFLSRRRFHRTSAVSSAAVHHQSYRNPDD 66

Query: 65  SVPSTASVPTFQQAIQRLQEYWASVGCAVMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAY 124
            V    SVPTFQQAIQRLQEYWASVGCAVMQ SNTEVGAGTMNP T+LRVLGPEPWNVAY
Sbjct: 67  DVTRAVSVPTFQQAIQRLQEYWASVGCAVMQPSNTEVGAGTMNPCTFLRVLGPEPWNVAY 126

Query: 125 VEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGVNVNEHDIRFVE 184
           VEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQ LFI SLSALG++V  HDIRFVE
Sbjct: 127 VEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFVE 186

Query: 185 DNWESPVLGAWGLGWEVWMDGMEITQFTYFQQ 217
           DNWESPVLGAWGLGWE+WMDGMEITQFTYFQQ
Sbjct: 187 DNWESPVLGAWGLGWEIWMDGMEITQFTYFQQ 214
The following BLAST results are available for this feature:
BLAST of Spo26671.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902238580|gb|KNA25234.1|1.6e-125100.hypothetical protein SOVF_0084... [more]
gi|731347800|ref|XP_010685169.1|2.1e-11492.1PREDICTED: glycine--tRNA ligas... [more]
gi|359489209|ref|XP_002270774.2|1.4e-8974.3PREDICTED: glycine--tRNA ligas... [more]
gi|970000909|ref|XP_015055657.1|2.4e-8978.8PREDICTED: glycine--tRNA ligas... [more]
gi|460367768|ref|XP_004229742.1|2.4e-8977.8PREDICTED: glycine--tRNA ligas... [more]
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BLAST of Spo26671.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S209_SPIOL1.1e-125100.Uncharacterized protein OS=Spi... [more]
A0A0J8BT17_BETVU1.5e-11492.1Uncharacterized protein OS=Bet... [more]
K4AYW1_SOLLC1.7e-8977.8Uncharacterized protein OS=Sol... [more]
A0A067K9B0_JATCU3.7e-8976.1Uncharacterized protein OS=Jat... [more]
A0A067HCB2_CITSI9.1e-8876.0Uncharacterized protein OS=Cit... [more]
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BLAST of Spo26671.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SYGM2_ARATH2.3e-8474.0Glycine--tRNA ligase, chloropl... [more]
SYGA_GEOLS6.7e-6072.0Glycine--tRNA ligase alpha sub... [more]
SYGA_MOOTA2.0e-5971.8Glycine--tRNA ligase alpha sub... [more]
SYGA_DESDA2.0e-5971.1Glycine--tRNA ligase alpha sub... [more]
SYGA_DESAG9.7e-5971.1Glycine--tRNA ligase alpha sub... [more]
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BLAST of Spo26671.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G48110.11.3e-8574.0glycine-tRNA ligases[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002310Glycine-tRNA ligase, alpha subunitPRINTSPR01044TRNASYNTHGAcoord: 205..216
score: 1.2E-39coord: 148..168
score: 1.2E-39coord: 179..203
score: 1.2E-39coord: 127..142
score: 1.2
IPR002310Glycine-tRNA ligase, alpha subunitPFAMPF02091tRNA-synt_2ecoord: 75..216
score: 3.7
IPR006194Glycine-tRNA synthetase, heterodimericPROFILEPS50861AA_TRNA_LIGASE_II_GLYABcoord: 74..216
score: 55
NoneNo IPR availableGENE3D3.30.930.10coord: 68..216
score: 1.7
NoneNo IPR availablePANTHERPTHR30075GLYCYL-TRNA SYNTHETASEcoord: 55..216
score: 1.2E
NoneNo IPR availablePANTHERPTHR30075:SF3GLYCINE--TRNA LIGASE 2, CHLOROPLASTIC/MITOCHONDRIALcoord: 55..216
score: 1.2E
NoneNo IPR availableunknownSSF55681Class II aaRS and biotin synthetasescoord: 74..216
score: 1.39

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0035725 sodium ion transmembrane transport
biological_process GO:0006499 N-terminal protein myristoylation
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006396 RNA processing
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0042779 tRNA 3'-trailer cleavage
biological_process GO:0033614 chloroplast proton-transporting ATP synthase complex assembly
biological_process GO:0000023 maltose metabolic process
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0015721 bile acid and bile salt transport
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0009414 response to water deprivation
biological_process GO:0009408 response to heat
biological_process GO:0009644 response to high light intensity
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0006334 nucleosome assembly
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0000272 polysaccharide catabolic process
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0005982 starch metabolic process
biological_process GO:0006000 fructose metabolic process
biological_process GO:0006012 galactose metabolic process
biological_process GO:0046486 glycerolipid metabolic process
biological_process GO:0006013 mannose metabolic process
biological_process GO:0009157 deoxyribonucleoside monophosphate biosynthetic process
biological_process GO:0009742 brassinosteroid mediated signaling pathway
biological_process GO:0010157 response to chlorate
biological_process GO:0006535 cysteine biosynthetic process from serine
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0006412 translation
biological_process GO:0016556 mRNA modification
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic
biological_process GO:0090617 mitochondrial mRNA 5'-end processing
biological_process GO:0008152 metabolic process
biological_process GO:0008652 cellular amino acid biosynthetic process
biological_process GO:0007005 mitochondrion organization
biological_process GO:0006434 seryl-tRNA aminoacylation
biological_process GO:0000096 sulfur amino acid metabolic process
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0007015 actin filament organization
biological_process GO:0045037 protein import into chloroplast stroma
biological_process GO:0032880 regulation of protein localization
biological_process GO:0010119 regulation of stomatal movement
biological_process GO:0015979 photosynthesis
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:1901671 positive regulation of superoxide dismutase activity
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0009651 response to salt stress
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0006479 protein methylation
biological_process GO:0009704 de-etiolation
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0009643 photosynthetic acclimation
biological_process GO:0000372 Group I intron splicing
biological_process GO:0009987 cellular process
biological_process GO:0006429 leucyl-tRNA aminoacylation
biological_process GO:0006450 regulation of translational fidelity
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:0018160 peptidyl-pyrromethane cofactor linkage
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0006782 protoporphyrinogen IX biosynthetic process
biological_process GO:0009409 response to cold
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0015031 protein transport
biological_process GO:0006952 defense response
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0050794 regulation of cellular process
biological_process GO:0001101 response to acid chemical
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0042273 ribosomal large subunit biogenesis
biological_process GO:0046835 carbohydrate phosphorylation
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0042450 arginine biosynthetic process via ornithine
biological_process GO:0006560 proline metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0010467 gene expression
biological_process GO:0033036 macromolecule localization
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0071702 organic substance transport
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0010275 NAD(P)H dehydrogenase complex assembly
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0090322 regulation of superoxide metabolic process
biological_process GO:0016075 rRNA catabolic process
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0007165 signal transduction
biological_process GO:0007049 cell cycle
biological_process GO:0010020 chloroplast fission
biological_process GO:0007017 microtubule-based process
biological_process GO:0051258 protein polymerization
biological_process GO:0009637 response to blue light
biological_process GO:0009451 RNA modification
biological_process GO:0010239 chloroplast mRNA processing
biological_process GO:0048366 leaf development
biological_process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process
biological_process GO:0045910 negative regulation of DNA recombination
biological_process GO:0044205 'de novo' UMP biosynthetic process
biological_process GO:0042991 obsolete transcription factor import into nucleus
biological_process GO:0043687 post-translational protein modification
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0006783 heme biosynthetic process
biological_process GO:0006486 protein glycosylation
biological_process GO:0009156 ribonucleoside monophosphate biosynthetic process
biological_process GO:0006230 TMP biosynthetic process
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0008654 phospholipid biosynthetic process
biological_process GO:0009657 plastid organization
biological_process GO:0006298 mismatch repair
biological_process GO:0042742 defense response to bacterium
biological_process GO:0006457 protein folding
biological_process GO:0000373 Group II intron splicing
biological_process GO:0006508 proteolysis
biological_process GO:0042793 plastid transcription
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0006364 rRNA processing
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0010197 polar nucleus fusion
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0001510 RNA methylation
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0000741 karyogamy
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0006555 methionine metabolic process
biological_process GO:0006431 methionyl-tRNA aminoacylation
biological_process GO:0009717 isoflavonoid biosynthetic process
biological_process GO:0051301 cell division
biological_process GO:0006265 DNA topological change
biological_process GO:0006897 endocytosis
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0050832 defense response to fungus
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0010468 regulation of gene expression
biological_process GO:0009108 coenzyme biosynthetic process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006426 glycyl-tRNA aminoacylation
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0048481 plant ovule development
biological_process GO:0045995 regulation of embryonic development
biological_process GO:0006566 threonine metabolic process
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0042545 cell wall modification
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0019748 secondary metabolic process
biological_process GO:0006546 glycine catabolic process
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009106 lipoate metabolic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0010207 photosystem II assembly
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0044238 primary metabolic process
biological_process GO:0009642 response to light intensity
biological_process GO:0051604 protein maturation
biological_process GO:0044208 'de novo' AMP biosynthetic process
biological_process GO:0006189 'de novo' IMP biosynthetic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0051607 defense response to virus
biological_process GO:0090351 seedling development
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0030150 protein import into mitochondrial matrix
biological_process GO:0046686 response to cadmium ion
biological_process GO:0010027 thylakoid membrane organization
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005730 nucleolus
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0015030 Cajal body
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0009501 amyloplast
cellular_component GO:0009509 chromoplast
cellular_component GO:0009513 etioplast
cellular_component GO:0009537 proplastid
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009508 plastid chromosome
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0005874 microtubule
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009295 nucleoid
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005739 mitochondrion
cellular_component GO:0044434 chloroplast part
cellular_component GO:0009345 glycine-tRNA ligase complex
cellular_component GO:0009536 plastid
cellular_component GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component GO:0005840 ribosome
cellular_component GO:0009707 chloroplast outer membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0042644 chloroplast nucleoid
cellular_component GO:0009507 chloroplast
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009579 thylakoid
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0048046 apoplast
cellular_component GO:0072588 box H/ACA RNP complex
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
cellular_component GO:0005887 integral component of plasma membrane
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0042646 plastid nucleoid
cellular_component GO:0005773 vacuole
cellular_component GO:0005829 cytosol
cellular_component GO:0016020 membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0019031 viral envelope
cellular_component GO:0005694 chromosome
cellular_component GO:0005768 endosome
cellular_component GO:0009333 cysteine synthase complex
molecular_function GO:0004828 serine-tRNA ligase activity
molecular_function GO:0002161 aminoacyl-tRNA editing activity
molecular_function GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters
molecular_function GO:0004823 leucine-tRNA ligase activity
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0008276 protein methyltransferase activity
molecular_function GO:0008508 bile acid:sodium symporter activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0051744 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity
molecular_function GO:0004176 ATP-dependent peptidase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0004056 argininosuccinate lyase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0008865 fructokinase activity
molecular_function GO:0004820 glycine-tRNA ligase activity
molecular_function GO:0033728 divinyl chlorophyllide a 8-vinyl-reductase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0004418 hydroxymethylbilane synthase activity
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0042781 3'-tRNA processing endoribonuclease activity
molecular_function GO:0003917 DNA topoisomerase type I activity
molecular_function GO:0030983 mismatched DNA binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0004032 alditol:NADP+ 1-oxidoreductase activity
molecular_function GO:0004825 methionine-tRNA ligase activity
molecular_function GO:0019136 deoxynucleoside kinase activity
molecular_function GO:0016773 phosphotransferase activity, alcohol group as acceptor
molecular_function GO:0043621 protein self-association
molecular_function GO:0042802 identical protein binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0033987 2-hydroxyisoflavanone dehydratase activity
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016018 cyclosporin A binding
molecular_function GO:0004124 cysteine synthase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity
molecular_function GO:0016887 ATPase activity
molecular_function GO:0004749 ribose phosphate diphosphokinase activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0008253 5'-nucleotidase activity
molecular_function GO:0004797 thymidine kinase activity
molecular_function GO:0003779 actin binding
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0070626 (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0017111 nucleoside-triphosphatase activity
molecular_function GO:0004158 dihydroorotate oxidase activity
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0052689 carboxylic ester hydrolase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016779 nucleotidyltransferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo150250.84Barchart | Table
Spo156370.82Barchart | Table
Spo009210.82Barchart | Table
Spo157930.81Barchart | Table
Spo206990.81Barchart | Table
Spo112690.81Barchart | Table
Spo000270.80Barchart | Table
Spo076440.79Barchart | Table
Spo100090.79Barchart | Table
Spo081650.79Barchart | Table
Spo199580.78Barchart | Table
Spo239330.78Barchart | Table
Spo210740.77Barchart | Table
Spo106230.76Barchart | Table
Spo224560.76Barchart | Table
Spo112210.76Barchart | Table
Spo171510.76Barchart | Table
Spo127780.76Barchart | Table
Spo240490.76Barchart | Table
Spo238290.76Barchart | Table
Spo006850.76Barchart | Table
Spo247500.76Barchart | Table
Spo208890.75Barchart | Table
Spo181500.75Barchart | Table
Spo244200.75Barchart | Table
Spo075380.74Barchart | Table
Spo232270.74Barchart | Table
Spo039720.73Barchart | Table
Spo133740.73Barchart | Table
Spo023300.73Barchart | Table
Spo020010.73Barchart | Table
Spo061620.72Barchart | Table
Spo173480.72Barchart | Table
Spo138360.72Barchart | Table
Spo156310.72Barchart | Table
Spo087290.72Barchart | Table
Spo173670.72Barchart | Table
Spo127640.71Barchart | Table
Spo188600.71Barchart | Table
Spo186950.71Barchart | Table
Spo144830.71Barchart | Table
Spo029640.71Barchart | Table
Spo090940.71Barchart | Table
Spo258460.71Barchart | Table
Spo073130.70Barchart | Table
Spo185980.70Barchart | Table
Spo182960.70Barchart | Table
Spo158410.70Barchart | Table
Spo094410.70Barchart | Table
Spo267750.70Barchart | Table
Spo024170.70Barchart | Table
Spo114450.70Barchart | Table
Spo272910.69Barchart | Table
Spo018310.69Barchart | Table
Spo034760.69Barchart | Table
Spo037420.69Barchart | Table
Spo045800.69Barchart | Table
Spo046220.69Barchart | Table
Spo088790.69Barchart | Table
Spo092820.69Barchart | Table
Spo118000.69Barchart | Table
Spo143100.69Barchart | Table
Spo165630.69Barchart | Table
Spo217570.69Barchart | Table
Spo240540.69Barchart | Table
Spo241530.69Barchart | Table
Spo250030.69Barchart | Table
Spo184790.68Barchart | Table
Spo128220.68Barchart | Table
Spo030570.68Barchart | Table
Spo039210.68Barchart | Table
Spo189080.68Barchart | Table
Spo261950.68Barchart | Table
Spo194070.68Barchart | Table
Spo170650.68Barchart | Table
Spo155520.68Barchart | Table
Spo169040.68Barchart | Table
Spo137320.68Barchart | Table
Spo006000.68Barchart | Table
Spo120590.68Barchart | Table
Spo008850.68Barchart | Table
Spo089980.68Barchart | Table
Spo266730.68Barchart | Table
Spo184780.68Barchart | Table
Spo180960.67Barchart | Table
Spo119450.67Barchart | Table
Spo118300.67Barchart | Table
Spo158930.67Barchart | Table
Spo170010.67Barchart | Table
Spo116260.67Barchart | Table
Spo086250.67Barchart | Table
Spo194180.67Barchart | Table
Spo064680.67Barchart | Table
Spo225240.67Barchart | Table
Spo231270.67Barchart | Table
Spo034520.67Barchart | Table
Spo022140.67Barchart | Table
Spo256600.67Barchart | Table
Spo148840.67Barchart | Table
Spo219390.66Barchart | Table
Spo009040.66Barchart | Table
Spo259130.66Barchart | Table
Spo106590.66Barchart | Table
Spo068530.66Barchart | Table
Spo067750.66Barchart | Table
Spo257730.66Barchart | Table
Spo047090.66Barchart | Table
Spo192200.66Barchart | Table
Spo029220.66Barchart | Table
Spo101060.66Barchart | Table
Spo020780.66Barchart | Table
Spo106190.66Barchart | Table
Spo253950.66Barchart | Table
Spo171140.66Barchart | Table
Spo197990.66Barchart | Table
Spo031080.65Barchart | Table
Spo081060.65Barchart | Table
Spo154820.65Barchart | Table
Spo183980.65Barchart | Table
Spo070900.65Barchart | Table