Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTAATCTTTCTAACAAAAGCAACGTCTTACAACGTCATCATTAGTTATAATTGTTCCATTGTAGAAAAAACACATTTCCACAGCCAAAACTATCTTATCCCCTAAAAATTATCAGAAAAATTGCATCAAAAAATGGCAGCAAACCTATTCTCTCCACTCTCATGTTATTGTTCAATCTCGAATTACAAAACCAGAGAAAATTATCTCTCCAACCACAACCAGAACCACAACCAACACCACCCATTTGCAGCTAATTTGAAGGCGAAAAGGGTAGTAAAAATGGGTGCATCTGTAGAAGAAATGAGTATATCCTCAGAATTGGCAACAGATTTAGCTAATCATCTTCATGAGAATCCTTCCTCAGTTATTTTAATGGCGGAAAGTGTTGGGTATTCTGTTGCTAGTTATTATACTTCTCTGGGTCTGTTTGTTATATCTGTTCCTGGGCTTTGGTCTCTGATCAAACGGTCAGTGAAATCAAAGGTTAGTAATAGTGAGTCGCTACCCTTTTGTTTTGTAACAAGATATATATAGTGCCTTTTCCATTTGATAATTGATTTAAGTGATGTTGTTTTAGATAGTAAAAAAGACTTATGTACAAGGGGATGAGATAAAGAAGGCTCCAAATCAGGTTGCAGGGGAAGTGTTATCCTACTTCACTCGCAACAATTTTACGGTGACTGATAGAGGAGAGACGATTACGTAAGTTGGTTGTTTTTCTGTGGGTATGGACTACATTTGTCTATTGATGAATTGATAGTAAATACTGTTATTGCAGTTTTGAAGGGACAATGTTACCGAGTAGAGGGCAAGCAGCATTGCTGACATTCTGCACTTGCATAAGCCTAGCAAGTGTAGCTCTTGTGCTCACTATTACATTTCCAGATGTGGGCAACAATTGGTTTTATATCATTGCACTTAGTCCTTTGGCGTAAGTCCTATCGCCACTTTTTTTTTTTGTTTCATTAGTAAGAGTGTAAGACCCTCTTCATCGTTCACATTTTTGTTTCACAGTGGAGCATATTATTGGAAACGAGCAACACGAAAGGAACAGATCAAGATCAAAATGGTTGTAAGAGAAAACGGGACACTATCAGAAATCGTTGTTCAGGGAGATGATCAGCAAGTAGAGCAAATGAGAAAGGAACTACAGCTAAACGAGAAGGGAATGGTATATGTTAAGGGCATTCTCGAAAGATAATTATACCCTGCCAAATTCTTATTATTTTAGATACTACCATTGTAAAAATAATACAAGAAAATCTCATCTCATCCCTTGTATGTTTCTGAAGAGCATTTTGTGCGGCAAATACAGTCATTGTTGAGATGTACTGTAAATACTTCTAAATATCTACAGAGCCACATTCATCAAAATTCAAAGTATCATTACTATCAAAATAATGCCACGAGTTGAATGTATTGTTGAAAACCATCACCAAAAATTTATACTAAGCAAAACGCCCA GTAATCTTTCTAACAAAAGCAACGTCTTACAACGTCATCATTAGTTATAATTGTTCCATTGTAGAAAAAACACATTTCCACAGCCAAAACTATCTTATCCCCTAAAAATTATCAGAAAAATTGCATCAAAAAATGGCAGCAAACCTATTCTCTCCACTCTCATGTTATTGTTCAATCTCGAATTACAAAACCAGAGAAAATTATCTCTCCAACCACAACCAGAACCACAACCAACACCACCCATTTGCAGCTAATTTGAAGGCGAAAAGGGTAGTAAAAATGGGTGCATCTGTAGAAGAAATGAGTATATCCTCAGAATTGGCAACAGATTTAGCTAATCATCTTCATGAGAATCCTTCCTCAGTTATTTTAATGGCGGAAAGTGTTGGGTATTCTGTTGCTAGTTATTATACTTCTCTGGGTCTGTTTGTTATATCTGTTCCTGGGCTTTGGTCTCTGATCAAACGGTCAGTGAAATCAAAGATAGTAAAAAAGACTTATGTACAAGGGGATGAGATAAAGAAGGCTCCAAATCAGGTTGCAGGGGAAGTGTTATCCTACTTCACTCGCAACAATTTTACGGTGACTGATAGAGGAGAGACGATTACTTTTGAAGGGACAATGTTACCGAGTAGAGGGCAAGCAGCATTGCTGACATTCTGCACTTGCATAAGCCTAGCAAGTGTAGCTCTTGTGCTCACTATTACATTTCCAGATGTGGGCAACAATTGGTTTTATATCATTGCACTTAGTCCTTTGGCTGGAGCATATTATTGGAAACGAGCAACACGAAAGGAACAGATCAAGATCAAAATGGTTGTAAGAGAAAACGGGACACTATCAGAAATCGTTGTTCAGGGAGATGATCAGCAAGTAGAGCAAATGAGAAAGGAACTACAGCTAAACGAGAAGGGAATGGTATATGTTAAGGGCATTCTCGAAAGATAATTATACCCTGCCAAATTCTTATTATTTTAGATACTACCATTGTAAAAATAATACAAGAAAATCTCATCTCATCCCTTGTATGTTTCTGAAGAGCATTTTGTGCGGCAAATACAGTCATTGTTGAGATGTACTGTAAATACTTCTAAATATCTACAGAGCCACATTCATCAAAATTCAAAGTATCATTACTATCAAAATAATGCCACGAGTTGAATGTATTGTTGAAAACCATCACCAAAAATTTATACTAAGCAAAACGCCCA ATGGCAGCAAACCTATTCTCTCCACTCTCATGTTATTGTTCAATCTCGAATTACAAAACCAGAGAAAATTATCTCTCCAACCACAACCAGAACCACAACCAACACCACCCATTTGCAGCTAATTTGAAGGCGAAAAGGGTAGTAAAAATGGGTGCATCTGTAGAAGAAATGAGTATATCCTCAGAATTGGCAACAGATTTAGCTAATCATCTTCATGAGAATCCTTCCTCAGTTATTTTAATGGCGGAAAGTGTTGGGTATTCTGTTGCTAGTTATTATACTTCTCTGGGTCTGTTTGTTATATCTGTTCCTGGGCTTTGGTCTCTGATCAAACGGTCAGTGAAATCAAAGATAGTAAAAAAGACTTATGTACAAGGGGATGAGATAAAGAAGGCTCCAAATCAGGTTGCAGGGGAAGTGTTATCCTACTTCACTCGCAACAATTTTACGGTGACTGATAGAGGAGAGACGATTACTTTTGAAGGGACAATGTTACCGAGTAGAGGGCAAGCAGCATTGCTGACATTCTGCACTTGCATAAGCCTAGCAAGTGTAGCTCTTGTGCTCACTATTACATTTCCAGATGTGGGCAACAATTGGTTTTATATCATTGCACTTAGTCCTTTGGCTGGAGCATATTATTGGAAACGAGCAACACGAAAGGAACAGATCAAGATCAAAATGGTTGTAAGAGAAAACGGGACACTATCAGAAATCGTTGTTCAGGGAGATGATCAGCAAGTAGAGCAAATGAGAAAGGAACTACAGCTAAACGAGAAGGGAATGGTATATGTTAAGGGCATTCTCGAAAGATAA MAANLFSPLSCYCSISNYKTRENYLSNHNQNHNQHHPFAANLKAKRVVKMGASVEEMSISSELATDLANHLHENPSSVILMAESVGYSVASYYTSLGLFVISVPGLWSLIKRSVKSKIVKKTYVQGDEIKKAPNQVAGEVLSYFTRNNFTVTDRGETITFEGTMLPSRGQAALLTFCTCISLASVALVLTITFPDVGNNWFYIIALSPLAGAYYWKRATRKEQIKIKMVVRENGTLSEIVVQGDDQQVEQMRKELQLNEKGMVYVKGILER Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo26644.1 vs. NCBI nr
Match: gi|902128248|gb|KNA04171.1| (hypothetical protein SOVF_202060 [Spinacia oleracea]) HSP 1 Score: 516.2 bits (1328), Expect = 3.600e-143 Identity = 269/271 (99.26%), Postives = 269/271 (99.26%), Query Frame = 1
BLAST of Spo26644.1 vs. NCBI nr
Match: gi|731343453|ref|XP_010682900.1| (PREDICTED: uncharacterized protein LOC104897660 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 378.6 bits (971), Expect = 8.900e-102 Identity = 210/277 (75.81%), Postives = 235/277 (84.84%), Query Frame = 1
BLAST of Spo26644.1 vs. NCBI nr
Match: gi|747098274|ref|XP_011097139.1| (PREDICTED: uncharacterized protein LOC105176129 [Sesamum indicum]) HSP 1 Score: 338.6 bits (867), Expect = 1.000e-89 Identity = 179/272 (65.81%), Postives = 218/272 (80.15%), Query Frame = 1
BLAST of Spo26644.1 vs. NCBI nr
Match: gi|802564618|ref|XP_012067360.1| (PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas]) HSP 1 Score: 335.5 bits (859), Expect = 8.700e-89 Identity = 169/217 (77.88%), Postives = 193/217 (88.94%), Query Frame = 1
BLAST of Spo26644.1 vs. NCBI nr
Match: gi|590647922|ref|XP_007032034.1| (Cofactor assembly of complex C isoform 1 [Theobroma cacao]) HSP 1 Score: 332.8 bits (852), Expect = 5.600e-88 Identity = 183/278 (65.83%), Postives = 219/278 (78.78%), Query Frame = 1
BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCC7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_202060 PE=4 SV=1) HSP 1 Score: 516.2 bits (1328), Expect = 2.500e-143 Identity = 269/271 (99.26%), Postives = 269/271 (99.26%), Query Frame = 1
BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C274_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g151770 PE=4 SV=1) HSP 1 Score: 378.6 bits (971), Expect = 6.200e-102 Identity = 210/277 (75.81%), Postives = 235/277 (84.84%), Query Frame = 1
BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Match: A0A067L3R0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26881 PE=4 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 6.000e-89 Identity = 169/217 (77.88%), Postives = 193/217 (88.94%), Query Frame = 1
BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Match: A0A061ED97_THECC (Cofactor assembly of complex C isoform 1 OS=Theobroma cacao GN=TCM_017354 PE=4 SV=1) HSP 1 Score: 332.8 bits (852), Expect = 3.900e-88 Identity = 183/278 (65.83%), Postives = 219/278 (78.78%), Query Frame = 1
BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Match: D7SVG9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01020 PE=4 SV=1) HSP 1 Score: 329.7 bits (844), Expect = 3.300e-87 Identity = 181/277 (65.34%), Postives = 213/277 (76.90%), Query Frame = 1
BLAST of Spo26644.1 vs. ExPASy Swiss-Prot
Match: CCB1_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana GN=CCB1 PE=1 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 2.200e-84 Identity = 161/219 (73.52%), Postives = 185/219 (84.47%), Query Frame = 1
BLAST of Spo26644.1 vs. TAIR (Arabidopsis)
Match: AT3G26710.1 (cofactor assembly of complex C) HSP 1 Score: 313.5 bits (802), Expect = 1.200e-85 Identity = 161/219 (73.52%), Postives = 185/219 (84.47%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo26644.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo26644.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo26644.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo26644.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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