Spo26423 (gene)

Overview
NameSpo26423
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01155 : 156021 .. 157753 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATATATATATATATATATATATATATATATATATATATATATATATGAATGCCCTCCATCATCTTGTTAAACCGTCTCTTGTTTCTTCACTACTAGAAACATACACTTGCCAGCCTCAATAATTACACTAATTAAGCTACGACTATATATATGTATACATATATATATATATAATCACTACGCTTAATATCGAGTTTAGTATCACTAGTTCACCGTCGATCATGTCTTTGGTATTGCTTAAAATCATGGCAGCTGCCTTGTTATTGCTTCAGTTGCATGCATGCAACGCAAGGCACACGTTTGATCTTGTATCCTATACGAAGGTACGTATTATCATATCATACGGAGTATCTCGATCTCTCAACACAACGCCCGCACTTCATTTTAATTAATGATTATGGACATATATATTATTTATGGTTGCAGGATTCTGATGCTGATAAAACAAAGATAGTAGATGATGAAATGAATATAAAGGGCCTTCATGTGTTGGAGGACACCAAATTTAAATCTTCTGGTATTTTATAACATACTCCATGCATCTGATTTCTATATCTATTATCCTATGCATGCAGCCATTCGTCAGCTGACAATATATTATTACAAAAACTTATATATGAAGGTTTTATATATAAGACAAGTTTCTTACAAGTAGTTATACGTGATCAAATAGTTATGTTCAATAATTAAAATCTATCAAACAGTTTCACTTTGTCACTGTATATATAGTTATATTTTTTTAATGATGGCATCAACGATCTTATGCATATGATTGTCTCACATGAGATTGGTTTGGTTTCCTAAGATCGATCTATAATTGCATCCTAGTTTAGCATGTTACATGGATGATGGATCAGTATTTTATGAAATTTACTAACATACCTGAGCTGATTTATTTTTTGAATGAACGTTTTAGATGACGTAACAGTTGCTACGTTGGAAAATAACACAAGGCCAGCAAGGGAAGTACAGGTGAATTTCTTATAGAAGCTATTACAGATTCACAGTGTATAAGCTAATCTAAGAACAATAACTTAATTAATGTATTAACATTATTAATTATGTTGATCTTGTTGGATTGGTAGGGTTTCGGAGAGAAGACAAGATCAATGATAGAATCTAAGTCCCATGATGAGACCAAAGAGGCGACTAATGAAGATGAAGGCGAACCTGTTGAAGACGCCGTGGTCATGGATTATGTTCTTCCCCATCGCAAGTCTCCAATTCACAACCATCATTAAACCTTGTAATTTCCTATGATGAGTTTCTTAAATGAGAAAAGGTTGTACTTGTGCACAAGGCTCTGCTATTTAGTGCAAATTTTTTAAAAATATTTATGTTTATACATATGGATATTATTCCCCCTTTATACGAGTCTTTTTTTTTCAGATTGTAACAAAAGTAAAGTTATAATTAGGTGGATGTACTAGACCATGGTTTTTCTCTTTTTAAATTTAATAGAGCAATGTGTGTTTTGTAACATAAATATTGTGCTCGAAAAATTATACTACGTACTTGTATTAATGGAGTTATGAAGAGACAAAATTAGATAAAATGGAGGGCCATGTTTGACAAGTATGGCCCTAGCTTGGTTCCTCTTAATTTATTACAAGAGAGTGGGAAAGAGGCAGGGGTTACCTGTTAATAACTGCATTTTCAGTTAGCTCAACTACCATTCTACCAATCCTTTGTCAAAATAAAAAGAAAAAACTACCATTCTACCAGCCCGTA

mRNA sequence

ATATATATATATATATATATATATATATATATATATATATATATATATGAATGCCCTCCATCATCTTGTTAAACCGTCTCTTGTTTCTTCACTACTAGAAACATACACTTGCCAGCCTCAATAATTACACTAATTAAGCTACGACTATATATATGTATACATATATATATATATAATCACTACGCTTAATATCGAGTTTAGTATCACTAGTTCACCGTCGATCATGTCTTTGGTATTGCTTAAAATCATGGCAGCTGCCTTGTTATTGCTTCAGTTGCATGCATGCAACGCAAGGCACACGTTTGATCTTGTATCCTATACGAAGGATTCTGATGCTGATAAAACAAAGATAGTAGATGATGAAATGAATATAAAGGGCCTTCATGTGTTGGAGGACACCAAATTTAAATCTTCTGATGACGTAACAGTTGCTACGTTGGAAAATAACACAAGGCCAGCAAGGGAAGTACAGGGTTTCGGAGAGAAGACAAGATCAATGATAGAATCTAAGTCCCATGATGAGACCAAAGAGGCGACTAATGAAGATGAAGGCGAACCTGTTGAAGACGCCGTGGTCATGGATTATGTTCTTCCCCATCGCAAGTCTCCAATTCACAACCATCATTAAACCTTGTAATTTCCTATGATGAGTTTCTTAAATGAGAAAAGGTTGTACTTGTGCACAAGGCTCTGCTATTTAGTGCAAATTTTTTAAAAATATTTATGTTTATACATATGGATATTATTCCCCCTTTATACGAGTCTTTTTTTTTCAGATTGTAACAAAAGTAAAGTTATAATTAGGTGGATGTACTAGACCATGGTTTTTCTCTTTTTAAATTTAATAGAGCAATGTGTGTTTTGTAACATAAATATTGTGCTCGAAAAATTATACTACGTACTTGTATTAATGGAGTTATGAAGAGACAAAATTAGATAAAATGGAGGGCCATGTTTGACAAGTATGGCCCTAGCTTGGTTCCTCTTAATTTATTACAAGAGAGTGGGAAAGAGGCAGGGGTTACCTGTTAATAACTGCATTTTCAGTTAGCTCAACTACCATTCTACCAATCCTTTGTCAAAATAAAAAGAAAAAACTACCATTCTACCAGCCCGTA

Coding sequence (CDS)

ATGTCTTTGGTATTGCTTAAAATCATGGCAGCTGCCTTGTTATTGCTTCAGTTGCATGCATGCAACGCAAGGCACACGTTTGATCTTGTATCCTATACGAAGGATTCTGATGCTGATAAAACAAAGATAGTAGATGATGAAATGAATATAAAGGGCCTTCATGTGTTGGAGGACACCAAATTTAAATCTTCTGATGACGTAACAGTTGCTACGTTGGAAAATAACACAAGGCCAGCAAGGGAAGTACAGGGTTTCGGAGAGAAGACAAGATCAATGATAGAATCTAAGTCCCATGATGAGACCAAAGAGGCGACTAATGAAGATGAAGGCGAACCTGTTGAAGACGCCGTGGTCATGGATTATGTTCTTCCCCATCGCAAGTCTCCAATTCACAACCATCATTAA

Protein sequence

MSLVLLKIMAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVTVATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKSPIHNHH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo26423.1Spo26423.1mRNA


Homology
BLAST of Spo26423.1 vs. NCBI nr
Match: gi|902231901|gb|KNA22437.1| (hypothetical protein SOVF_034060 [Spinacia oleracea])

HSP 1 Score: 247.7 bits (631), Expect = 1.200e-62
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1

		  

Query: 9   MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT 68
           MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT
Sbjct: 1   MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT 60

Query: 69  VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS 128
           VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS
Sbjct: 61  VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS 120

Query: 129 PIHNHH 135
           PIHNHH
Sbjct: 121 PIHNHH 126

BLAST of Spo26423.1 vs. NCBI nr
Match: gi|731366525|ref|XP_010695119.1| (PREDICTED: uncharacterized protein LOC104907823 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 141.0 bits (354), Expect = 1.500e-30
Identity = 80/131 (61.07%), Postives = 95/131 (72.52%), Query Frame = 1

		  

Query: 6   LKIMAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSD 65
           + ++    LLLQ HACNARHTFDL SY+K  DADKTK +  E  IKG   +EDTK  S +
Sbjct: 4   IALIMVTFLLLQTHACNARHTFDLFSYSKLQDADKTKQLHHEY-IKGFPGVEDTKETSLE 63

Query: 66  DVTVATLENNTRP-AREVQGF-GEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVL 125
           D +  TL+ +TR    +VQG  G K RSM+ESKSH+ETKEAT+  EGEP+EDAVVMDYV 
Sbjct: 64  DTSFVTLDKSTRADITDVQGLKGNKPRSMLESKSHEETKEATDASEGEPIEDAVVMDYVQ 123

Query: 126 PHRKSPIHNHH 135
           PHRKSPIHN H
Sbjct: 124 PHRKSPIHNKH 133

BLAST of Spo26423.1 vs. NCBI nr
Match: gi|870845021|gb|KMS97853.1| (hypothetical protein BVRB_5g122830 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 75.9 bits (185), Expect = 6.100e-11
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1

		  

Query: 92  MIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKSPIHNHH 135
           M+ESKSH+ETKEAT+  EGEP+EDAVVMDYV PHRKSPIHN H
Sbjct: 1   MLESKSHEETKEATDASEGEPIEDAVVMDYVQPHRKSPIHNKH 43

BLAST of Spo26423.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RUC3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_034060 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.200e-63
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1

		  

Query: 9   MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT 68
           MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT
Sbjct: 1   MAAALLLLQLHACNARHTFDLVSYTKDSDADKTKIVDDEMNIKGLHVLEDTKFKSSDDVT 60

Query: 69  VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS 128
           VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS
Sbjct: 61  VATLENNTRPAREVQGFGEKTRSMIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKS 120

Query: 129 PIHNHH 135
           PIHNHH
Sbjct: 121 PIHNHH 126

BLAST of Spo26423.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BCQ0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g122830 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.300e-11
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 1

		  

Query: 92  MIESKSHDETKEATNEDEGEPVEDAVVMDYVLPHRKSPIHNHH 135
           M+ESKSH+ETKEAT+  EGEP+EDAVVMDYV PHRKSPIHN H
Sbjct: 1   MLESKSHEETKEATDASEGEPIEDAVVMDYVQPHRKSPIHNKH 43

The following BLAST results are available for this feature:
BLAST of Spo26423.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902231901|gb|KNA22437.1|1.2e-62100.hypothetical protein SOVF_0340... [more]
gi|731366525|ref|XP_010695119.1|1.5e-3061.0PREDICTED: uncharacterized pro... [more]
gi|870845021|gb|KMS97853.1|6.1e-1181.4hypothetical protein BVRB_5g12... [more]
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BLAST of Spo26423.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RUC3_SPIOL8.2e-63100.Uncharacterized protein OS=Spi... [more]
A0A0J8BCQ0_BETVU4.3e-1181.4Uncharacterized protein OS=Bet... [more]
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BLAST of Spo26423.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo26423.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009640 photomorphogenesis
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0010206 photosystem II repair
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0006768 biotin metabolic process
biological_process GO:0048510 regulation of timing of transition from vegetative to reproductive phase
biological_process GO:0006979 response to oxidative stress
biological_process GO:0030091 protein repair
biological_process GO:0006464 cellular protein modification process
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0022414 reproductive process
biological_process GO:0033043 regulation of organelle organization
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0009791 post-embryonic development
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0019760 glucosinolate metabolic process
biological_process GO:0007127 meiosis I
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0048481 plant ovule development
biological_process GO:0017148 negative regulation of translation
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0009910 negative regulation of flower development
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0009556 microsporogenesis
biological_process GO:0000165 MAPK cascade
biological_process GO:0010076 maintenance of floral meristem identity
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0010582 floral meristem determinacy
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0052543 callose deposition in cell wall
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0006417 regulation of translation
biological_process GO:0009414 response to water deprivation
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0009617 response to bacterium
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0070647 protein modification by small protein conjugation or removal
biological_process GO:0006310 DNA recombination
biological_process GO:0006364 rRNA processing
biological_process GO:0009657 plastid organization
biological_process GO:0008654 phospholipid biosynthetic process
biological_process GO:0003006 developmental process involved in reproduction
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0080167 response to karrikin
biological_process GO:0006457 protein folding
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010196 nonphotochemical quenching
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0009698 phenylpropanoid metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009658 chloroplast organization
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0009407 toxin catabolic process
biological_process GO:0042631 cellular response to water deprivation
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0016043 cellular component organization
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0009653 anatomical structure morphogenesis
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0051276 chromosome organization
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006749 glutathione metabolic process
biological_process GO:0007059 chromosome segregation
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005622 intracellular
cellular_component GO:0016020 membrane
cellular_component GO:0000785 chromatin
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0044434 chloroplast part
cellular_component GO:0009517 PSII associated light-harvesting complex II
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
cellular_component GO:0009295 nucleoid
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005739 mitochondrion
cellular_component GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0009523 photosystem II
cellular_component GO:0005768 endosome
molecular_function GO:0000900 translation repressor activity, mRNA regulatory element binding
molecular_function GO:0004602 glutathione peroxidase activity
molecular_function GO:0008113 peptide-methionine (S)-S-oxide reductase activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0051738 xanthophyll binding
molecular_function GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function GO:0048038 quinone binding
molecular_function GO:0003756 protein disulfide isomerase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0043621 protein self-association
molecular_function GO:0005515 protein binding
molecular_function GO:0005484 SNAP receptor activity
molecular_function GO:0003993 acid phosphatase activity
molecular_function GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0003682 chromatin binding
RNA-Seq Expression