Spo26415 (gene)

Overview
NameSpo26415
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionMethyl-CpG-binding domain-containing protein 2
LocationSpoScf_01155 : 63001 .. 65829 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTTCCAAAACCAATTGAACGATAATCTAATCAGAATGCCCAATTATCAAGTGGAAAACGGGCCAATTATCAGTCAGTTTCCACCTTCGAAACATTTAGGTTCTAGCAGCTATGAAGCTCTTGCAACTCATCAGTTTCAGCCAAATTCCAAACATAACCCCCAAAGGAGTAATACAAGTAATGATCATCACAATGATCAACAAACGAATGGTGAGATTCTTACACCGGACAAAAGTAGCCATTGATTAATTCCAATTCGTGTCGCAATCCCCCGTAAACTTCAATTGTTATTTTTTCCTCTTAACCAATCCAGTTTTGCACCCTTAGCCCGGCTTGTATTGTTATTTATGCGATTCTTTTTATGTATATTCATGACAATGAATGTTGATTGCTTAATAATTTCAGGCACTATATTGCACCATCTGGTAAGAGACTTCGGTCGATGGTTGAGATTCAGAGGTATGTTTCTATTATCCTCTTCATCTTGAAATTATCTACTTTAATAGATATTTATTTGTAATGTATGTTAAGACTGCTCAGAAGTTTCATTCTTATGCAATATCCACGACTCCTTTGTTTTGTCTGTATGCATATACCTGTTGGAGCATCCATAATTCATTACGGAAGGAGTGACTATGTCCCTGTTTTCATTTCAAATTCCAAAGCCTCTGCAAGAGAACTATGTCAGAAATAGCCCTGCTCGTTTACCTATGCCGGATGGCTCTAAGTTTGGGATGTCAAGAGCCGATCAGACCATTCTGGTATATTTTATGTTTAATAATTTGGGTGTTGTTTAATAATTTGGATGCCTATATTCAGACTCAGACCATAGTACCATATTTTCTAATCAAATGTAACCAAAAAAGGTTGCCTTAGCAAGCCTTCTAAAGATAATTTCTGAACATATTTGCTTTATGTTTTGAAAGGGAAAAAAAGATAAATTGGTACATGGAGAACAAATCCAAGATCATCTTTGCTGGCGAATTTATGAAGACATCAGGCCTATAAGGTAACTTTATTAACGGATTATTTTTTTCTGTATTTTTTTTAAAAACTAATTACTGCTCAGATTCTTGCAGTTTCTTGGGTGTTAATTTTGGATTGATGCCGACTCCCATTTGCAGATTCCACACTAGATCATCAACAAGAACATTGTGTAAGGTTATTGTACCTCTGTATATCTTTCTTGAATTAATCGTATACTCCTTCCGTTTATTTAAATTCTTCAATTCTGGTTTACTGTTTATCATTCAATTATTAAAATAAAACAATATCCATTATTTTATTTTTTTGTAAGTTGGAGCTTGAACGAACTTTAACCGAGCTTATTAACAAACACACACGACTTTATGGACGAAAAACACAAGTTGATTTGTCTATTAGTGAAGTTTATACTTTTGTTTAAGCTCTTTTGTTTACTTAGATACAAAGTTAGATTTATCTATTAATCAAGTTTATACTTTTATTTAAGCTTGTTTGTTTACTTAGAAACGAGTTTCGACCCAAAATTGACTAAGTTTGTTCATCACAAGTTAGTATAGTATCATAGAATCATCCCACAATACTATGCAATAGTACGTAGTATGATCTTAATAAACTTATAGTGTTCCTTTTATCTTTATCCCACATATTTCCCGTCAAAATCCCAGTTGAAATAATAAATGGTTGGTTATGTCGACTGCTCTGCCATTATGCCATGTCTGGATGTTGGCAATACATGACCTTTCTTTTCTGGTTCAAACAGGTGTTTATAAAGGCATGAATTTCACTCTGGTCTTATCATCTATTGATTTGTTATTTCCATTGGCATGTTCTAATTCCGAGGGTGCCCAATCTGAGGGAGTGAGTTTTGACCTAGGTTTCCAATAATCTCTCTTGTGATATGTGCATGTAAATGACTTAGATACGTGTGATTTATGGTGTATTTAGTAGATCTTTATATGGTGTCCCATATATTGTGTTGGACTGTGTCACCATATGTTTGGCAGCGGTTCTGATGGTTGTGGTGTGTTATGGGCGCCTATTTTTTTGTTCTCATGCGCCTATGTAAGCTTAGAGTATAGTTTTAGGTTCTTGATTAATGGAACATCTTGGATTTTGACTGAAAGGTAATGTCGGGAATTTTTATGACATCTTTATTTCTCTGTTTTCATCCGATTCATGTACAAACTCGTTTATAGTCTACTGCACCTTTGTCATTCTTGTGCTAGTTGCATCCCATGCAACAATTTCCTTAGCCTGCTTAATAGTAGCTTATTTGATTCAATCCGGCCAGTTATCCAGCATTTGTTCTTTCTTGGATTACAGTCAAGGCCCATGATGAATTGAACTTGATTTCTTTAGATAATATCATTACTGTGAAGCCACAAGCCCAAAGGGTTGCTGTAAACTCCATAACCCTCCCCCATGCCATTTGTCTTTCTTAAACAAGTAGCTTACCAAAACACAGATCTATGTCCAGACTTCTGAGCGGAGACTGGTAAGAAATATATTGGAAAGGATGTGCAATGCCATTGCTACCTTTATGATGTTGATTAACAGGGGCTATCCTAAATATGATAACGTGGTTAACTCCAGATTTGATTCTTTTCGTACTTTGTTATCAACTACTCTGTATGTTATATGCTGTAAAAGTTCTTATCCAACCTGTGATGCTTCGTAGTTGTGCTAGTTATCACCAGTATAAGCTCTCTCCGCAGCTACTTACAACTTGCAGGAAGGCATAATAAACTGTCAGCCGTGTAATACTAGTCTCAGAGGAAAATGTATACGATTCCAGAGAAGCTTTCTTTAAATGAATTTGGTTATTTACCAGTGTACACGAC

mRNA sequence

ATGCCCTTCCAAAACCAATTGAACGATAATCTAATCAGAATGCCCAATTATCAAGTGGAAAACGGGCCAATTATCAGTCAGTTTCCACCTTCGAAACATTTAGGTTCTAGCAGCTATGAAGCTCTTGCAACTCATCAGTTTCAGCCAAATTCCAAACATAACCCCCAAAGGAGTAATACAAGTAATGATCATCACAATGATCAACAAACGAATGGCACTATATTGCACCATCTGGTAAGAGACTTCGGTCGATGGTTGAGATTCAGAGGAGTGACTATGTCCCTGTTTTCATTTCAAATTCCAAAGCCTCTGCAAGAGAACTATGTCAGAAATAGCCCTGCTCGTTTACCTATGCCGGATGGCTCTAAGTTTGGGATGTCAAGAGCCGATCAGACCATTCTGGGAAAAAAAGATAAATTGGTACATGGAGAACAAATCCAAGATCATCTTTGCTGGCGAATTTATGAAGACATCAGGCCTATAAGTTTCTTGGGTGTTAATTTTGGATTGATGCCGACTCCCATTTGCAGATTCCACACTAGATCATCAACAAGAACATTGTGTAAGGTGTTTATAAAGGCATGAATTTCACTCTGGTCTTATCATCTATTGATTTGTTATTTCCATTGGCATGTTCTAATTCCGAGGGTGCCCAATCTGAGGGAGTGAGTTTTGACCTAGGTTTCCAATAATCTCTCTTGTGATATGTGCATGTAAATGACTTAGATACGTGTGATTTATGGTGTATTTAGTAGATCTTTATATGGTGTCCCATATATTGTGTTGGACTGTGTCACCATATGTTTGGCAGCGGTTCTGATGGTTGTGGTGTGTTATGGGCGCCTATTTTTTTGTTCTCATGCGCCTATGTAAGCTTAGAGTATAGTTTTAGGTTCTTGATTAATGGAACATCTTGGATTTTGACTGAAAGGTAATGTCGGGAATTTTTATGACATCTTTATTTCTCTGTTTTCATCCGATTCATGTACAAACTCGTTTATAGTCTACTGCACCTTTGTCATTCTTGTGCTAGTTGCATCCCATGCAACAATTTCCTTAGCCTGCTTAATAGTAGCTTATTTGATTCAATCCGGCCAGTTATCCAGCATTTGTTCTTTCTTGGATTACAGTCAAGGCCCATGATGAATTGAACTTGATTTCTTTAGATAATATCATTACTGTGAAGCCACAAGCCCAAAGGGTTGCTGTAAACTCCATAACCCTCCCCCATGCCATTTGTCTTTCTTAAACAAGTAGCTTACCAAAACACAGATCTATGTCCAGACTTCTGAGCGGAGACTGGTAAGAAATATATTGGAAAGGATGTGCAATGCCATTGCTACCTTTATGATGTTGATTAACAGGGGCTATCCTAAATATGATAACGTGGTTAACTCCAGATTTGATTCTTTTCGTACTTTGTTATCAACTACTCTGTATGTTATATGCTGTAAAAGTTCTTATCCAACCTGTGATGCTTCGTAGTTGTGCTAGTTATCACCAGTATAAGCTCTCTCCGCAGCTACTTACAACTTGCAGGAAGGCATAATAAACTGTCAGCCGTGTAATACTAGTCTCAGAGGAAAATGTATACGATTCCAGAGAAGCTTTCTTTAAATGAATTTGGTTATTTACCAGTGTACACGAC

Coding sequence (CDS)

ATGCCCTTCCAAAACCAATTGAACGATAATCTAATCAGAATGCCCAATTATCAAGTGGAAAACGGGCCAATTATCAGTCAGTTTCCACCTTCGAAACATTTAGGTTCTAGCAGCTATGAAGCTCTTGCAACTCATCAGTTTCAGCCAAATTCCAAACATAACCCCCAAAGGAGTAATACAAGTAATGATCATCACAATGATCAACAAACGAATGGCACTATATTGCACCATCTGGTAAGAGACTTCGGTCGATGGTTGAGATTCAGAGGAGTGACTATGTCCCTGTTTTCATTTCAAATTCCAAAGCCTCTGCAAGAGAACTATGTCAGAAATAGCCCTGCTCGTTTACCTATGCCGGATGGCTCTAAGTTTGGGATGTCAAGAGCCGATCAGACCATTCTGGGAAAAAAAGATAAATTGGTACATGGAGAACAAATCCAAGATCATCTTTGCTGGCGAATTTATGAAGACATCAGGCCTATAAGTTTCTTGGGTGTTAATTTTGGATTGATGCCGACTCCCATTTGCAGATTCCACACTAGATCATCAACAAGAACATTGTGTAAGGTGTTTATAAAGGCATGA

Protein sequence

MPFQNQLNDNLIRMPNYQVENGPIISQFPPSKHLGSSSYEALATHQFQPNSKHNPQRSNTSNDHHNDQQTNGTILHHLVRDFGRWLRFRGVTMSLFSFQIPKPLQENYVRNSPARLPMPDGSKFGMSRADQTILGKKDKLVHGEQIQDHLCWRIYEDIRPISFLGVNFGLMPTPICRFHTRSSTRTLCKVFIKA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo26415.1Spo26415.1mRNA


Homology
[Close]
BLAST of Spo26415.1 vs. NCBI nr
Match: gi|902226784|gb|KNA20480.1| (hypothetical protein SOVF_052010 [Spinacia oleracea])

HSP 1 Score: 105.1 bits (261), Expect = 1.400e-19
Identity = 61/78 (78.21%), Postives = 64/78 (82.05%), Query Frame = 1 

		  

Query: 1   MPFQNQLNDNLIRMPNYQVENGPIISQFPPSKHLGSSSY-EALATHQFQPNSKHN-PQRS 60
           MPFQNQLNDN+IRM N QV+NG    QFPPS HL SSSY EA ATHQFQPNSKHN  QRS
Sbjct: 218 MPFQNQLNDNIIRMANSQVDNG-FTGQFPPSNHLVSSSYEEAPATHQFQPNSKHNHRQRS 277

Query: 61  NTSND-HHNDQQTNGTIL 76
           NTSND HHND+QTNG IL
Sbjct: 278 NTSNDHHHNDKQTNGEIL 294
[Close]
BLAST of Spo26415.1 vs. NCBI nr
Match: gi|902219735|gb|KNA18395.1| (hypothetical protein SOVF_071160 [Spinacia oleracea])

HSP 1 Score: 81.3 bits (199), Expect = 2.100e-12
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 1 

		  

Query: 90  GVTMSLFSFQIPKPLQENYVRNSPARLPMPDGSKFGMSRADQTI 134
           GVTMS FSFQIPKPLQE+YVR  PARLPMPDGS FGMSR DQTI
Sbjct: 216 GVTMSQFSFQIPKPLQEDYVRKRPARLPMPDGSNFGMSRPDQTI 259
[Close]
BLAST of Spo26415.1 vs. NCBI nr
Match: gi|731318180|ref|XP_010669582.1| (PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.8 bits (146), Expect = 2.900e-6
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 

		  

Query: 89  RGVTMSLFSFQIPKPLQENYVRNSPARLPMPDGSKFGM 127
           +GVT+S FSF+IPKPL+ENYVR   ARLPMPD + FGM
Sbjct: 197 QGVTLSQFSFRIPKPLKENYVRKRTARLPMPDETNFGM 234
[Close]
BLAST of Spo26415.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLU6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_052010 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.500e-20
Identity = 61/78 (78.21%), Postives = 64/78 (82.05%), Query Frame = 1 

		  

Query: 1   MPFQNQLNDNLIRMPNYQVENGPIISQFPPSKHLGSSSY-EALATHQFQPNSKHN-PQRS 60
           MPFQNQLNDN+IRM N QV+NG    QFPPS HL SSSY EA ATHQFQPNSKHN  QRS
Sbjct: 218 MPFQNQLNDNIIRMANSQVDNG-FTGQFPPSNHLVSSSYEEAPATHQFQPNSKHNHRQRS 277

Query: 61  NTSND-HHNDQQTNGTIL 76
           NTSND HHND+QTNG IL
Sbjct: 278 NTSNDHHHNDKQTNGEIL 294
[Close]
BLAST of Spo26415.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFY9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071160 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.500e-12
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 1 

		  

Query: 90  GVTMSLFSFQIPKPLQENYVRNSPARLPMPDGSKFGMSRADQTI 134
           GVTMS FSFQIPKPLQE+YVR  PARLPMPDGS FGMSR DQTI
Sbjct: 216 GVTMSQFSFQIPKPLQEDYVRKRPARLPMPDGSNFGMSRPDQTI 259
[Close]
BLAST of Spo26415.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FP83_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035750 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.100e-6
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 

		  

Query: 89  RGVTMSLFSFQIPKPLQENYVRNSPARLPMPDGSKFGM 127
           +GVT+S FSF+IPKPL+ENYVR   ARLPMPD + FGM
Sbjct: 197 QGVTLSQFSFRIPKPLKENYVRKRTARLPMPDETNFGM 234
The following BLAST results are available for this feature:
BLAST of Spo26415.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902226784|gb|KNA20480.1|1.4e-1978.2hypothetical protein SOVF_0520... [more]
gi|902219735|gb|KNA18395.1|2.1e-1286.3hypothetical protein SOVF_0711... [more]
gi|731318180|ref|XP_010669582.1|2.9e-671.0PREDICTED: methyl-CpG-binding ... [more]
back to top
BLAST of Spo26415.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RLU6_SPIOL9.5e-2078.2Uncharacterized protein OS=Spi... [more]
A0A0K9RFY9_SPIOL1.5e-1286.3Uncharacterized protein OS=Spi... [more]
A0A0J8FP83_BETVU2.1e-671.0Uncharacterized protein OS=Bet... [more]
back to top
BLAST of Spo26415.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo26415.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006885 regulation of pH
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0006869 lipid transport
biological_process GO:0010351 lithium ion transport
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0048767 root hair elongation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005773 vacuole
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0015299 solute:proton antiporter activity
molecular_function GO:0052692 raffinose alpha-galactosidase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo156480.68Barchart | Table
Spo168930.68Barchart | Table
Spo187660.67Barchart | Table
Spo241970.65Barchart | Table