Spo26407 (gene)

Overview
NameSpo26407
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase (2.7.7.6)
Locationchr3 : 30452597 .. 30466428 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCGCCTCCACTTCTGCGAGGCCTGCCCTTCCTCCGCCTCCGCGTCTTCCTTCACCATCACCACCGCCTTCTCACACCCGTCTTCTGCACTCCTCTCCGCCCTCGTTTATGCTCGTCCTCTCCTTCTGAGTCGACTCGGTCAGAGGACGATGTGTACTCGTCGGCGAGTGAACTTTTTACGGTAAAAGATCCTCCCAAGTTTTTCGACGGAATTGATGAGATTAATTTCCGTAAATGGAAAGATAAAGAAGATGAGATTTTACAGGATATTGAGCCTATTACTTTTCTCGCCAAAGACATTATCCACTCTGATAGGTATGATTTGTTTTTAGTTTTTTTTTTCTTTTTTTGTCCAGATTAATGTTTGTTAATTTATTGAATTTTATTATTATCTCATTATTTGTCATCCATTATATTGTGGTTTTGCTTAATTGAAAGTGAAATTCTACCCTTACAGTATAGTTTTTTCTACTTGGTGGAAACAAAATAATTTGACTCTCTTTAGTGATTTTGTAGTTTTGTAAATGTGATTAGAGTGCATTAGGTACATTTTAAGAGCTAACTCATGGATATATGACTAATTTATAACCAATTAAACCAAAATCACTGACCTATTTATGAGTTAATCAATTCCCTCCAAAACCTACAAGTTCTGCTTCAACACTTGTGCAATGTACAAGTTCTTTATACTCAGTATTTTTTAACATGTTGCCTGAGTTAGTAGACTGATGATAGTATCAATACGTAAGAATTAATTGACTTCACCATACCTTGCCCCAACGTTCGATTATTTCCAGTCACAAACTAACAACTACAGTCTACAGGAACATGTCAGTCTGCATGACTCATTAGGTAAGTCTGGAAATGTAAGGCCACCAGTTCTAACAGTACGATTGTGAGGGTCCAGAACTTGAAACGATGCAGGCCATTTTTGGGGGATAGGAATCGAACAACTGACAGTTTGATCCACTGTCGAATATTGAATCCCACATTCAGTTGTACCATTAACTTGAACACAACCACATTTGTACTTTTCTTTGTTCAATTGGTTGTCTATCACTCTTTGTAACACAAAAAGAAGAATACAAAGTAAAATCGGGAATATTACAAGTCAACATTATCATTTTCATTATCATTATCATTACCCCATTGCCTCAAAAAGGCTCCCGCAAGAAGCGGGGTAAGGGGGGTCGGGTGTACGCAACCTTACCCCTGCATTTGCAGAGAGGTTGTTTCCAATTGACCCAAAAGCGATAACGGGACGATAATCTTCTACTTCATGGAAAGGAAGCGAAGAGGTTTTAAGAGCCATTTTGATTTAGTTCATTACATCCTACAGCCAAAAGAACAAATGAATCTTTGGCTCCATCGGAAATAGACATATCTGTCTCTATAATACATAGGTGAGAACAAAGCAAAGTTAAGACAATATTAAACATAATAACCTTCTCAATTTCACATGACTCAAAATCAAATAAAGATTAACCATTGGAGAATGTCAGTTAGATATAGGAAGCATGTACTCAAGCAATTCAACAACTCAGCAGATAAATTAGAAGATACTTATTATTTTTAACACCCTAAATCTGTAATCCATTTCAAAGGAATGTTAACATCAAAATGTAAGACAATAGAAAGATCAAAGCTTAATATATCTGCAACTCACATACTTAGAACAACTATTAGTCCACTAATAGACAATGTTTTCCAAGACACAAATGAATCAGATGAATCCATTATGTTATAGAGAATGAAAATACGGAGATGAGCAATTCCTACGTTGACTTTTGCTTTGAATATGCAGCACCATGTCATTCGTGTTGGGGATTAATGGTAACAAAAATTTGTAGAATAGCAGCCTGATGGGAAGCACTAAACCAGTTAAACCAAACCAAAAAAGCAAGAACACCACTTGCTAAACCAAAGTAAGAACAGTAGCTAGCCATAAAAAATCCTAATAGCAGCATGTCTTCAGCACAGTCTAACAACCATGAGTGCAGCATGATACACACACAACCATGACTGCAGCATGATGCGAAGATGGAATTATATAAATAACAATTGCCCAGATTTGTCGTAATACTTCAAACTGTTGCAAAGTACATTAGCATTGTTCAAAAAACACCAATCTGTCACAAAAGCTAATAACTAAGACTAATTTAACTAGAAAAATACCTATCTGTCATAAAAGACAACAACCAAGACTAAGTTAAAAGAAATGGTTCGGGTTGAGATGCAGGTGCAACCATGCTTCTGGTCAACTACAATCATCTTTTCTACTTTTTTTTTCAGTCATGCCACCTTTGCATGTCCTTGAATTATGTCCTAAGGACTTGCATCTCTTACATTGAACATTCCCTTTTCTGGATCACCATCTTCTCTTCTTCTATTGACCACTTCCTTGACTACTTCCCTCGTTAACATCATTAGATTACACTTGCCTACTTCCCCCACCAACATTAGTAGATTGGACTTGCCCAAGCTTTCATGAAATTACTCTCTGCTAATAACCTGAGCTACTGGGTTGGTAGGTTCGAGCAGTTGGGTAGATCCTAGTAGCCTTCTCCTAGTAGCAGTACTCTTAGGTATTTTATGCAAAACAAGGGATGAGTCAAGTGAAAGGTTTGAACGGGATAGAGCAGTGATCTCTTGGTTAATGGGCGTTGCATTTGAGTATGTGGGGAAAGGGACATAAATTGACTGTTATTGATCCTGTTCACTATTAGGGGGATTTCTCCTTAGAGGTAGGTTCTTCGCTTGTGATTTTGGTGGTGCCTTAGATTTTGGTCCTTTACCTTTCACAGGAGGTTCAATCAGAATTTTTGTCTCATTAATTATCTCAATGTCATGCCAATGCTCTTCAATAGCATGGTTAATTCTAGTCCGATACTCATTGATAACACTCTCATTGTTAACCGGTATGTTTCTGTTACTAGGTGTACTGCTCCCAATGTGCATATTATCCTTATATTGTAGTGTTTCACTAAGTTTCCTAGCACCAGTCACACAATCAGTGAGCTTATCAACTACCCAACATACACATATGTTACCTTTGTTGTACTTAACCTGTCTATTATTGATTGACATTAAGTCACTGCCCGCTTTAAGCATTACATCCTCCATATTATAGCAGTAGTGAAAACTAGGAAATTTTGGCATTTGATACCCCTTTTCTTAAATCCTTCTTCATACTCTATTATCAAGTCAATCCGCATAACCTTATCAACATCATCAACTATCAAATCACTTTCTGGACCCGCAAGTGAAATCTTAATACTAACTGATCCATTCTGCTACAACACAACAGACACCAACCACAAACAAATCCACAAATTAAAAAACGACCAAAATATATACTTATCACAATCAACTTCAACTAATAAATCATGAATCTCAACCAACAATTCCAAAATTGTATTAATTCATCAAGTATAACAAAACAGAGTATAATTTAACCTACTTAAATTTGTGCTTAAAATTTGAGCGATTGTTAAGAAATATGTATAAGTAACCTTGATTTTCTTTTTAATATTACCGCACTTGCTTTCCAATTGCCTCCAAAACTCAGAATGCGCCGAAGTTACCCGCGATTAAAATCCTAAAACTCAACGAAGTACTTTCCCCAATGTGTTTGCAGTTGCGAAAATTTGCAGAAACCATACTAGAACATAGCAAAATATCAAAGAGATTTAAAACCAGTGAATTTTTATTGAGGTTGAATTTGAAAGAGAATAAGGGATGAGCAAAGATAAATTTGGAAAAGGGGAACGGAGGAGGAGGAATACGAGGTTTGTAGTTTAATCCAAGGGAGTCAATAAAATAGTGGGGGCTTTATTTATGATTAAGTTAAGGGGTAGGTTAGTCAAGTCACTCATTTAAGCATGGGTCAGCTTTTAACTATGTAGCTAGTGCACTCTAATGACATTTACAAAAGTACATGGCCATTGGCCACTAAAGAAAGTCAAATTATTTTGTTTCCACCAAGCAGAAAAAACATACTATAAGGCCACCATGACGAATTTCCCTAATTGAAATTATTAAGATACCTTATTACTATGATATCGTGATTAAAGTTGTTATGTTGTACTTATTATATCCTAAGCTATGTTACTAGACTCGTTTGAAGTGTTGAGCATGGTTATGTGTCCAAATTTTAGACTCGGCTACAACTGTTAGAACAAAGGTATGCGTCCTAGTTTTAGACATGGCCATGTGCTATCTTATGAAGTTTTGTGTGATTTTGGTCCGAAATGAATGGTTCGATTGTCATCTTAGTGTCGATTATCTGGCATCGGTGATTGAGATGAAATGAAGAGTCGCAATAACATTCCTCCTAATATTTAGTGTTATAGAAGAATAATATGGTCTTGGTACTTGGAAAACTGGAAAGTGTATTTGTTACAAACCTTGTAAAACAACTTGCTTGTTGAAATCAAATCAGAATCCTTCTGTTTGAGCCTTAATTCTTTAGGATTGGAACCAAATAAGTCATCGCAAATAAAATTGACAGAATGTTTTTTTCCATGTACACGACAATGAAACATGATAGGGATGTTTCTCTAGATTGTTGTTTTCCTGGTTATTACAATGTAATTTGTTAACTAGACATATCTTAAAACGGATAGAAAATGATTGCTCATACTCTATTAATTTTCTTGTGTTAAAACACTGACATCCTTGTCCTTTGGAGATGACCTGGTTCTAGACAAGCTACTCTATGGTGCGAGCGCGTATAATTTAAACATTCTATTAGGAAGCCCTAATTAGTATTACTGGTGGTTGAAAGAACCTGTACGTTAATATATGACACATATCTAAAAGGTTTGAAACAACAGAATAAGTTGGTTGGTTCTCTGGAAAGTGAAGTTCAGATGTATAAGGGACAGGAGCAAAGGAAATAAAAGTGAGTAGAAATGCATATAATTGGTGGAAAAATGGAAATGAGGCTTACTGGGAATAAAGAGGTTTTTGGAGTTGAAAATCCTGTAGATAGAATTAAAAATGATCCTTGCAAAGTTATGCGGAGAAAAAAGATTGGACATGCCTTTGTAATGGTGAATTAGAACCTGTAATGTCTTTGTTACTTTATCAGCTTCGGGGAAGGGGGGATCTAAAGTTTTTCCCTCCCCTGAGTTTTGGCTAGGCTATAGTGATTTTGCAATAAAATTCCTTAAATTTGCTCTAAAAATAGAGTGAAGCTAGGTACTAATGGAACAACCTTCAGATTATCTAGAGCGTTGGCTTTCTAAAGATTTTCTAGTGGAAGTAAATGGAAAGGAAGAATAGTTGATATATAAAAGAACGGGCCGGAGCTGGATATACTTCTGTATCACATATTATAGTTTCTGTGTTACTCGAAAATGCTTCATAGTGAATACCCCTTGTGACTAGCGTATATTTTGTAAAAGGGATGATGGGATGCTGAAGATTTGGGGCCAAAGATTCTGGTAAAGAGGTCATGAGATGCATGCAAGAGCTTCGCTATAATGTTGGTGAAGCAAGCTTCCATGCCTTCAAATTGTAATCTTTAATGCTGTGTATTCATTCTTGGCCCCTGACTAGGGGTAAATGAAGGAAAATTATAAGAGATAGTAAAAGATGTAAAATTAATAATGGAATTAATCCTTGTGCATGTGGCTTATGTGTATTCATAGCCCATTTTGTTTATGTAATCTAGTACTGAAGTTATGGATCATATCTTAGAAGTAGAACGTAATACTTTAAACTCTTATGTTATACTGGATCTTAGGAAGAAAGTATACTATATTAGACATATGTTGTGTACACTTGTTAATAAGGGTGCTGAACTATCTGAATCATGTACTAAAGTCAGGTTAGCAGTGATAGAAAGTGAACTCTTCTTCAGATCTTTTAGTTACTGTCGGGTCTTAGCCCACTTAGGTTAAATTAGTCCATCCCTGGTCTGTCAGACATAATTTCCTGCCACTATCTTGCGTAGATTTCGTTTTTGCCCAAGTGCTGTTCTTATTTTCTTTTTAGGGAAAGTTTCCTAGGAGTAGTTTTTGAGACCCGTTGTAAAGAAAATTTCTATCTTTTTATGAAATTGGATGGATGGAAGAGAGCGTATTTTTCCTTTCTATTTACTTTACCCTTCGTACTTCCAGTGGGTTTAGCTAGGAGATTGGAGAAGCTATGGAGGTCTGGTGTAGGTTAGAGGAAGTGGGGTCATCTTCCTAGATAGGACTTTGTCTGTAGACCTAAGAATGAGGGCTGCCTACGATTTAGTAATTTGGTGTCTAAAAGCGTCGATTATAGGAAAGTGGTGGTCGTGTTTTCCGCGATAGTGTAGTTCTCTTTGACACAAAGTGACTCCGGGCAGATACGGTCTTCAATGGTACGGCTAGAATGCGCTAACAGAAGTTCTTTTCACTAGCTCTTTCTTTCTTTGTTTCGTGGGTCAAAGTTCAAGGCCGGTGGGGAGAATGTTGTGTTTTAGAGGATGCTTGGGCAGGGAGCTACTATTTTGTAGTATTATTCCCTATCTCTTTATTTGATTGGTTTGTCTCCAATTTCTTTTCTTTTGAGTGAGGAACTGTGAGTGTTTCTTGGGATTTTTATTTTGGCCCCAATGACTATGACTGGGAGTTTGAGGAGCTTATTAACTTCTTGAGAATCCATGTATTAAATTAAGACTAAGGGTAGGAGAGTGAAGTTGGTTGATCCTTTAATGAAGAGTAAAACAAGAGCAAAATAATTTGAACAATTTGGGAGAAATCACTCAATCAGCTGCCTTTCATTCACTATTCTGTCTCATTTACATTCCTCACTTAATTACATTATATAGTGAGCCTCCTTGGACACATTCTTATACCCTAATCAATCAGATGCTGCCACCAATAATTAGTGACATCACTCACTACCCGATAAACTGACGGAAACTTCTAGCAGGATCCTATGACGACTAAAAGAAACAGAGAGCTAACAATAGCTGGACAAAGCAGAAATTATCTAGGACACAATATCTAAGGAAAATGCATCAGCATTTGACTGCTGCTTGGTGTTCTATTTGGCTAGTCTTCAACACCTAATGGTCTTTTTTCTTGTCATTCATCTTAAAAGTGTTCGCATTCGTTTCTTATTTCTAGTTTTATGTGGCGGCTAAGCTTCTGAAGCAGGTGAAAACTTTCGAGTGGGTTGCATCTTCTCCTCATATGTGTTATTTATTTCTTGGTAGTGATAGATTAAGGGATTTTCCGTTTTTGCATTATGGCGTGGTATTTTTCCTTTAGGCCACTGGTCCACAGTAAATCTCCCAGATGTGAGTATATGTCATGCATTTTAGTCATTTCTTCTGTGCTTGTGTTTATCTTCATTTATTTCCATTACCACTCAATTCTGCCTATAAAGCGGTAATGAATGGTAAGGGAAATTTCTCAAGGTAAACACATGTTTTCTACTGCCTTTGACATTATTATCGCTGCCTTTCGTACGGTCCATAAATTTGGTTTGAAATTTAGGAGAAACAAGAAGTGAGATGCGAGTATTCTAGAATGACAAAAAAACTCCTAAGACGAGGTTCCATTCTCAAAGACTTTAGAAGATTTTAGGTTTTTAGCTCAAAGTCAAAGATGCGATTATTTAAGCTCAAAGTCAAAGATGGGATGATTTAAGCTCCAAAGTCAGTGTTGACCATATTTTTCTTTTTGGTTTATCTCTAACTGAAAGTAATATTCTCGAAGGTCTGACGACAACTGCTGAAATTAAAAAAAGACTCTCTAACCAACATAAGTTCCTGTCAGAGGTTTCCTTGCTTGTTTTCTACCTGTTTTCTTAATGCTTCTATATCAAATTGTTCAAATCATAGGTTTTGATACTTGCATCATTCCTGAATTGTCAGTGTCTCCTTTTAGTAATAAGATAAACCCCATCACACATGTCTTATGTTTAATGAAATAATACCTACCTTCCACTTAATCAATCACCTTATTTATTTATTGATTTTTGTTTTTTTTTTTCTAGTTTGCATCTAGCTCATGCTTGAGGGAACCATCACATCAAGCAATGTTAATGTATCACTGTTCTGACTTGAGGGAACCTGTTCTGTTTGTTTAATTATTCATGGATAGAACTGTCAGATCGGGTGTGCATGTGTGGGTCTAGTTTGGGTCGGGGCTTGTAGTGTTCGGTTGAATTCGATTCTAGCCATGCTAGGTCAGTGTGTCCATGTGGATTAATTCGGTTTAGGGTTACATTGGGTTTGCTCAGGTTGTACTGTGTGGATCAGCTTTTGGCAGCTCCATTAAGAATGGGGTCCGCCTTGATCATCCATTTCAGTGCAATGTGATGTCTCCATTTATATATATGAAGTTTTTTTGAGGCTCAATGACCTACCAGAGTCCAGAGGTATCAGACCTTTGTTGTAAGGCCTATTTGTGAAAGTTCTTGTGTTGGATACTTGTCAAATGGGTTGGTACTTAAACTCTTTAAATAAGGGATAATAAAGGTTCTGTGTTGATCCTTTCTGATGTGCTTTCAGTATTTCAATGATTCAAATACAAAACATGACTTTTCAAACAACGCTGATACTCACACATGAAGAAGAGGATGTATGGATAGAGGATGCTGTTTAGCTTGACCCTCTAATTAGGCAATATATCCTGTTTGGCTTGACCCACAAACTAGGAATATAATATTAGTTTTCTTGTAATGCCTTAAATGGATAAATATACTTGATTATTATTCTTGAAAAGTCATAAAAAGCTTGCAACAATGGTTTTTAAAAGTCCATCTCTTCGAAAAAGTATCTTGTTTTTAAATTTTGGTTAGGGCAAGTTTTAATGGGCTAGTTTTTTAACTTTTTTTTTTGGACTCTTCACAAAGACATCAAAACCCTAGTCCTTAAAACTTGCATGAATTCCTTTGATCCTTCCAGACTCTAAGGTTATTGTACCATGGTTGACATTTTATATTGGCAGGTACATGGATGGGGAACGCCTGTCGCCTGATGATGAGAAAGTTGTTATAGAGAGGTTGCTTGCCTATCATCCTCGTTCTGAAGATAAAATTGGATGCGGACTGGATTCAGTTATGGTATTATTCAATCTTCTCACCATACTATTGTACCTCTAATTTGCTATCACTTTTTGTGTGTCATGAGTAATTTTTGCCAACAGTTTATTGATTCTAAGATAAAGTGGTTAGCATATTTAATCCAGCCATTACTTAGATTTTAAAATGGATGGTTCCCTATAAATAAAACCGATTTTTGCCCACTACAATCATGATAACCAACTAACACCTTTGAAGTTCGAACCATTGACACCAAATATGTAATTGCAACTCCCTAGAGTACGAGATGTCCATTTTTTCGGTGTTGAAACAATTGTTAAAATTTCCGAGAACATAATATTTTAGTTCAATTCATGAAATTTCTTATATGTAACACTTGTTTAGATAAGAGGAAATGGAGAGAAAATGAGGGAAGGGGAAGAAGTTCCCTTGTTTGGATAAGGGGTTGGGGAAGGAAGAGGAGGAAGAGGGTGGGATCCTCCCTCTTTAATGAACTCCATCCCTCCGAAATTGGAGAATTTGGAGTTGAAATGAGCTCCACCATTCCTCCCGTCCTCCTCTTCTCTCCCCTCCCCTCCCAGCCCCTTCCTTTCCTTTCCTTTCCTTTCGATCTTGCTATCCAAAAAAGCGTAAATAATATGGATTAATCCTTTTTTGAAAAATAAAATAAAAAATGCACCGGTATGGGCTCAAGATTTAAGAAAGTGATTAAAAGTAAAAAAAAATGCCCATATGATAAATATCAAACGTTTATAATGGTAGAATGAGTAATTGTTTGCATGGTGATAACTAATAATAAAAATTGCTTTTAGCTGTGAGAATACACTTTTTTACCCTGGAATGTTATGCGTAATTAAAAGTAGGAAAATTGCCTATGAGTATCACCAACTTTCTCTATTGGGTGACATTTTTCTCTCTGCATCACCAACTTTCCCATAATTGGGCTCATCAGTGATGGAATCTACAAGGAATAAACCGTCAAAAAAAGAATAAGTATTATAATAATCTATTTTGTGAATCGAAAGAAAAGGAAAAATAGAACTTCAGCCCCTTACCCTCCCCTCTCCTATGTGTGACTTTCACCCCTCTCCTGAAGTCCACCACATGTCCACCACCAAGCCCCACCCCTGACCACCGTGCTCTCATGCTGTGGTACCACTGTGTGGCTAAGGAGACTGAAACCACCATCTCTAAGACATGCTCTTTAATGGGGGGCTGAAAGAGGAGGGAGATGGAGGGGACAGGAGGTGGTTGGAAAATAGTGCAGGGGAGGTAAGGGCTGAAAGAGGAAGGAGATGGGGGATGGGGTGGTTTCTGTGTTAGGCCTGTTAGCCTTCTTGATAGCCGTGCGTTGCAGATTTTGGAAGGAAATGGTGCTGTAGCGCTGAAGTTGGAGGTGTAGGGAAACAGTAGGGAGGGCTTAACGCGGTGGTGGTAGGGTATGAGGGTCGTTACTAGTGTAGTAGTTAGTCCTGGCCTGGGTTTCTGTCTTCTGCTGGTCAGAACACATGAGTGGGTGGGTGCGATGGGAAACCAGCAAGAGGGGAAGGGATATATTTTTTTTCCCTTCTTTTCTGATTTCCGTTTATTTCGATTTAGAAAATAGGTTTTAATTTTAACGGAAGATTACACCGCTGGTTAGACAATAAATTGTGAACAAAGTATACGAAAGTTGGTGATATTCATCAATAGTTCTAGCCAAATTGTAAATTGTGATATAATCTCTGTACATGTTGCTAATTTATTAGTATAGAGTTGACCACCAAACAACAAACTATCTCTTTAAAGTTTGAACTACGGGATGATTAGTGAGCAAACTAAATTGGGCCTGAAGGAGTATGTGATATACAACATTACAAAACGGCACTAGGGAGTAAGAATATAGGAAGTAGAAACTAAAAAGGGACAAAGGGGGCTATTATTTATTATTATTATTTTATTTTCTTATTTCTGTGTGTTATTGTATTATGATTGTTACTACTAGTGATTTTCTTTACTACGCTCTCTATAAATTTGTTTTACTATTATCTTTATGTCGATTTTCATCTGCTGCACACTCCGGTTATCTTGCCATATTCATATAACTCATTTATCAAATACCTCAGGTGAATAAGAATATTAGGGTGTGATCCATGAAATTTAATAGGAAAAATACAGCTCTCCACATCTATGTTGTATACTTCTAATGAGCTGCGACTTTTACTCTCGTCAGCACTCCACATCTATGTTATATACAGTTCTCCACATCTATGCTGTATACTTCTAAGTCCAATTAGCACATCACTCGTCACTATTACTTTTCCACCAACCACTACTAATTTTATAAACAATCTCACCAATGGTGCACATCCCTGTTACTCCTAATGCTGACTTTCTTTTTAGTCATTATTCAGAAATGAAATACTTCCTCCTATTTTATGTCAATTTTGGCACAAGAATTAAGGAGTGACACACTTCATTTTGGCACAAGAATTAAGGAGTGAAAAAGAAAGACTAAAGACAATAATGCTCTTAACGTATACCTACCCGAAGCACCCACTTCCTAAAATTAATGTGGCATAAGGGTAGAGTTGAAATTGCATCTTACAAAACATTCCAAAAAGAGAAACTTGTCAACCAAAAAAAAAACATCACAAAAAGGAATACGTGTCAACAAAAAAAGGCAGAGGAAGTATAATATCAGGTAAACAAATATAATCAGATTACTGCACCTTTGTAGCATATGTCACCTGTGGGTCTTTATTATAACAGTCCTTGTACAAGTTTCCATTAAGAATAAGGTTGTCTTCTTGGACCCCTTTACACCTTCCTTGGGGTACGATTCATACTGCGTTGTTGTAGATGTTGAAATACTTAAAACTTGATTGTACCATTGATATTTATGTTACGGCTTGACCAGTAAGAAATGGGACAGAGAGGGAGGGTGGATGACAAGGAAGAGGGAGAGGATGTTGTTCATGCGCCAAAGCAAAGCATCTTTAACTCTTTATGGGGTGAGTGTGGTGACTGGTGTTGAATTCATTAAATTACCAAAAGTCTAAGGTTGAGAAGAGACATTGGTGGTAAGGGTGTTTATTAGTGTACAAAAAATATTGCAATGGAGAGGTTTTATCAGAGAGCCCAGGATTATTGCTATAGTACTATTTTTGTTCTGTAGTGAGGTGGGTGCATGAAGGTAGTTAGGTAATCTAAGGTGAGCGGTAGCAGTTTTGAAAATCAGCGACTTTGTAGGTAATGGGGAATATATGCAATGGTCTGATATGATATAGCACCACCTTTTCCTCAATATTGATGCAAATTAATTTCATTGACTTTTCGGTCATTCTCATGGTATTTGAGTTGTATGTATTTTGCTTGACAGAATCCTGGGAAGCTCGAATTGGTAGAGATCTCTTTCCAAACTATATCTTTGCAAGTTTGATCATGTAGGGCTTTGTTTTTCATGTTTTCCCCCGTGCTAAACCCTTAGATTGGGATTTGTATTGAATTAGGCTAGGGAGGCTCTCTATTATTTTCCATACAAACGAATTGATTGAGAGGTCGTGAGTTCGTGATTAACCTACACCGAAGATATTGAAGATACCTCAACCAGAAAGAGGTTAAATTTGTAGATATCACATCCATTCAAATACCCCAACCAAACACCACCCCCTTATATGTGGGTCTCCCATTGTGTGAATGTTGTGGCGTTATGCTTGTGAATTTGAATTTGAAGTTCGAGGGAGATGGTCCTCGAACAAGTGACTTTTCTGAAAGCTTTGATGATTCTTTGTTCTGTTCATGAATATATGTTGCTTTTCTCAGTTGTCATTTTAGATCTGTATGGTGATCTATCTATTGAGATAAACTTATATTCTGGTATTTAGGTATGATTCACGAGAAATAAAAAATATTGAATAGGGTAAGGCTCCCATTCTCAAATAGTGTTGTGTACAAATAATTTTATTTAGAAAAAGATGTTAATATCTAATTGGTGATGTGTAGCATGTTCTCTTAAGCTAATGTTCATTCCTCTTGATGAAAGGTTGACCGGCATCCCCAATTTAGACATTCAAGGTGTCTGTTTGTTGTAAGAACGGATGGTGGATGGATCGACTTCTCCTACCAGAAATGTTTACGGGAGTATATTCGAAATAAGTATCCCTATCATGCTGAAAGATTCATCCGAGAACATTTTAAACGCAGTAGTGGTTAAAAAAAGAAAACATCATGGCGGTAACAGTTTTTGATGTCCGAACCTGATGGCTATGATATGACAAAAAAAAAAGGCTAGGAACCAAATGCTATTCATTGGACAGTCGGCATCCTTGTATTGCTAAACTGGTTTTAGCCATTATGTAGTAGATACTTCTTTACTATCATTAGCTGTTGATGTTATAGTTGACATAGAAAATGATCTACTTGGTATATTGTAATGGGGTTCTGCACAGTTATGGACGCTGAAAGTCCTCAGACTTCATGAAGTTATGTGAACCCAGATGTAGGAAGGATGTGAATTTATTAATGTATTGAACACAACGATCATTTTCCCTGATGCAGTTAATGTACATATTAGGAATATGGTTTCGGAGGTTATCTTTTTGGTCCATGATAATGATAAAATGCCAACATTTTTGCCCAGTGATGTCCACTACTTCCTTCTGCCCTTATATTTGTTGTTTGCTTAATATGAAAAATCATGGAAAATGGGACTTGTATTGTTTGATTGATCAAAACAAGGAGAAATGGACGTAAACAATCCCAACTATGCACATCATCTTTAAAAGAGCCCTACTACAAGTTAACTTACAACACTCC

mRNA sequence

ATGGCTGCGCCTCCACTTCTGCGAGGCCTGCCCTTCCTCCGCCTCCGCGTCTTCCTTCACCATCACCACCGCCTTCTCACACCCGTCTTCTGCACTCCTCTCCGCCCTCGTTTATGCTCGTCCTCTCCTTCTGAGTCGACTCGGTCAGAGGACGATGTGTACTCGTCGGCGAGTGAACTTTTTACGGATATTGAGCCTATTACTTTTCTCGCCAAAGACATTATCCACTCTGATAGGTACATGGATGGGGAACGCCTGTCGCCTGATGATGAGAAAGTTGTTATAGAGAGGTTGCTTGCCTATCATCCTCGTTCTGAAGATAAAATTGGATGCGGACTGGATTCAGTTATGGTTGACCGGCATCCCCAATTTAGACATTCAAGGTGTCTGTTTGTTGTAAGAACGGATGGTGGATGGATCGACTTCTCCTACCAGAAATGTTTACGGGAGTATATTCGAAATAAGTATCCCTATCATGCTGAAAGATTCATCCGAGAACATTTTAAACGCAGTAGTGGTTAAAAAAAGAAAACATCATGGCGGTAACAGTTTTTGATGTCCGAACCTGATGGCTATGATATGACAAAAAAAAAAGGCTAGGAACCAAATGCTATTCATTGGACAGTCGGCATCCTTGTATTGCTAAACTGGTTTTAGCCATTATGTAGTAGATACTTCTTTACTATCATTAGCTGTTGATGTTATAGTTGACATAGAAAATGATCTACTTGGTATATTGTAATGGGGTTCTGCACAGTTATGGACGCTGAAAGTCCTCAGACTTCATGAAGTTATGTGAACCCAGATGTAGGAAGGATGTGAATTTATTAATGTATTGAACACAACGATCATTTTCCCTGATGCAGTTAATGTACATATTAGGAATATGGTTTCGGAGGTTATCTTTTTGGTCCATGATAATGATAAAATGCCAACATTTTTGCCCAGTGATGTCCACTACTTCCTTCTGCCCTTATATTTGTTGTTTGCTTAATATGAAAAATCATGGAAAATGGGACTTGTATTGTTTGATTGATCAAAACAAGGAGAAATGGACGTAAACAATCCCAACTATGCACATCATCTTTAAAAGAGCCCTACTACAAGTTAACTTACAACACTCC

Coding sequence (CDS)

ATGGCTGCGCCTCCACTTCTGCGAGGCCTGCCCTTCCTCCGCCTCCGCGTCTTCCTTCACCATCACCACCGCCTTCTCACACCCGTCTTCTGCACTCCTCTCCGCCCTCGTTTATGCTCGTCCTCTCCTTCTGAGTCGACTCGGTCAGAGGACGATGTGTACTCGTCGGCGAGTGAACTTTTTACGGATATTGAGCCTATTACTTTTCTCGCCAAAGACATTATCCACTCTGATAGGTACATGGATGGGGAACGCCTGTCGCCTGATGATGAGAAAGTTGTTATAGAGAGGTTGCTTGCCTATCATCCTCGTTCTGAAGATAAAATTGGATGCGGACTGGATTCAGTTATGGTTGACCGGCATCCCCAATTTAGACATTCAAGGTGTCTGTTTGTTGTAAGAACGGATGGTGGATGGATCGACTTCTCCTACCAGAAATGTTTACGGGAGTATATTCGAAATAAGTATCCCTATCATGCTGAAAGATTCATCCGAGAACATTTTAAACGCAGTAGTGGTTAA

Protein sequence

MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASELFTDIEPITFLAKDIIHSDRYMDGERLSPDDEKVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRNKYPYHAERFIREHFKRSSG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo26407.1Spo26407.1mRNA


Homology
[Close]
BLAST of Spo26407.1 vs. NCBI nr
Match: gi|902218566|gb|KNA18069.1| (hypothetical protein SOVF_074190 [Spinacia oleracea])

HSP 1 Score: 347.8 bits (891), Expect = 1.100e-92
Identity = 173/201 (86.07%), Postives = 173/201 (86.07%), Query Frame = 1 

		  

Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60
           MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL
Sbjct: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60

Query: 61  FT----------------------------DIEPITFLAKDIIHSDRYMDGERLSPDDEK 120
           FT                            DIEPITFLAKDIIHSDRYMDGERLSPDDEK
Sbjct: 61  FTVKDPPKFFDGIDEINFRKWKDKEDEILQDIEPITFLAKDIIHSDRYMDGERLSPDDEK 120

Query: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 174
           VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI
Sbjct: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 180
[Close]
BLAST of Spo26407.1 vs. NCBI nr
Match: gi|731314824|ref|XP_010688580.1| (PREDICTED: protein DCL, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 259.2 bits (661), Expect = 5.000e-66
Identity = 133/201 (66.17%), Postives = 147/201 (73.13%), Query Frame = 1 

		  

Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60
           MAAPPL+RG+P LRLR+ LH+HHRL   +F     P LCSS+ S  T SE+DV SSA++L
Sbjct: 1   MAAPPLVRGMPLLRLRLRLHNHHRLTLNLFAPRPHP-LCSSASSGLTTSEEDVLSSATQL 60

Query: 61  FT----------------------------DIEPITFLAKDIIHSDRYMDGERLSPDDEK 120
                                         DIEPIT LAKDIIHSDRYMDG+RL PDDEK
Sbjct: 61  LRVKQPPKLFDRIDDANYRKWKDKEDQILRDIEPITLLAKDIIHSDRYMDGQRLMPDDEK 120

Query: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 174
            V++RLLAYHP  EDKIGCGLDS+MVDRHPQFR SRCLFVVRTDGGWIDFSYQKCLREYI
Sbjct: 121 AVMQRLLAYHPHCEDKIGCGLDSIMVDRHPQFRQSRCLFVVRTDGGWIDFSYQKCLREYI 180
[Close]
BLAST of Spo26407.1 vs. NCBI nr
Match: gi|802571400|ref|XP_012068293.1| (PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas])

HSP 1 Score: 231.9 bits (590), Expect = 8.600e-58
Identity = 120/202 (59.41%), Postives = 143/202 (70.79%), Query Frame = 1 

		  

Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSAS-- 60
           MAAP LLRG+P LRLR   H+HHRL   +  +PLR   CS++  +STR +++V ++    
Sbjct: 1   MAAPLLLRGIPLLRLR---HNHHRLAVRIL-SPLRQSWCSAA--DSTRLDEEVTTAEKST 60

Query: 61  ---------------------------ELFTDIEPITFLAKDIIHSDRYMDGERLSPDDE 120
                                      E+  DIEPIT L K+I+HSDRY+DGERL+ DDE
Sbjct: 61  AVLSARDPSNYPIWDDPDYRKWKDKEDEILRDIEPITCLTKEILHSDRYLDGERLTADDE 120

Query: 121 KVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREY 174
           K+V+E+LL YHP SEDKIG GLDS+MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLR Y
Sbjct: 121 KLVVEKLLTYHPNSEDKIGSGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAY 180
[Close]
BLAST of Spo26407.1 vs. NCBI nr
Match: gi|743786833|ref|XP_011029320.1| (PREDICTED: protein DCL, chloroplastic-like [Populus euphratica])

HSP 1 Score: 228.0 bits (580), Expect = 1.200e-56
Identity = 123/200 (61.50%), Postives = 142/200 (71.00%), Query Frame = 1 

		  

Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDD-------- 60
           MAA  L+RG P LRLR  L HHHR  T +   PLR   CS++  EST  E+D        
Sbjct: 1   MAASALVRGAPLLRLR--LQHHHRFATGLL-VPLRRSWCSTA--ESTPPEEDGVSLSTPA 60

Query: 61  --------VYSS------------ASELFTDIEPITFLAKDIIHSDRYMDGERLSPDDEK 120
                    YSS             ++++ DIEPIT LAK+IIHSDRYMDGE+L+ +DEK
Sbjct: 61  ALSLRKAPKYSSWDDQNYRQWKDEEADIWRDIEPITQLAKEIIHSDRYMDGEQLTDEDEK 120

Query: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 173
           VV ERLLAYHP S+DKIGCGLDS+MVDRHPQF++SRCLFVVRTDGGWIDFSYQKCLR YI
Sbjct: 121 VVAERLLAYHPNSDDKIGCGLDSIMVDRHPQFKNSRCLFVVRTDGGWIDFSYQKCLRAYI 180
[Close]
BLAST of Spo26407.1 vs. NCBI nr
Match: gi|747047499|ref|XP_011069724.1| (PREDICTED: protein DCL, chloroplastic [Sesamum indicum])

HSP 1 Score: 227.6 bits (579), Expect = 1.600e-56
Identity = 121/202 (59.90%), Postives = 139/202 (68.81%), Query Frame = 1 

		  

Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDD------VY 60
           MAAP LLR LP LRLR+   HHH L T    T LR   CS +   ST +ED+      ++
Sbjct: 1   MAAPLLLRALPLLRLRLVQRHHHFLFTNGSIT-LR-LFCSVATGSSTGAEDNPASLRQIF 60

Query: 61  SSAS-----------------------ELFTDIEPITFLAKDIIHSDRYMDGERLSPDDE 120
           SS +                       E+  DIEPI  L K+I+HS+RYMDGERL+P DE
Sbjct: 61  SSRTSKDPPNYPRWSDPDFRKWKDKEAEILKDIEPIICLTKEILHSNRYMDGERLTPQDE 120

Query: 121 KVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREY 174
           K V+++LLA+HP SEDKIGCGLDS+MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLR Y
Sbjct: 121 KAVLDKLLAHHPHSEDKIGCGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAY 180
[Close]
BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGH0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_074190 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 7.500e-93
Identity = 173/201 (86.07%), Postives = 173/201 (86.07%), Query Frame = 1 

		  

Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60
           MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL
Sbjct: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60

Query: 61  FT----------------------------DIEPITFLAKDIIHSDRYMDGERLSPDDEK 120
           FT                            DIEPITFLAKDIIHSDRYMDGERLSPDDEK
Sbjct: 61  FTVKDPPKFFDGIDEINFRKWKDKEDEILQDIEPITFLAKDIIHSDRYMDGERLSPDDEK 120

Query: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 174
           VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI
Sbjct: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 180
[Close]
BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D4T2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g015620 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.500e-66
Identity = 133/201 (66.17%), Postives = 147/201 (73.13%), Query Frame = 1 

		  

Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSASEL 60
           MAAPPL+RG+P LRLR+ LH+HHRL   +F     P LCSS+ S  T SE+DV SSA++L
Sbjct: 1   MAAPPLVRGMPLLRLRLRLHNHHRLTLNLFAPRPHP-LCSSASSGLTTSEEDVLSSATQL 60

Query: 61  FT----------------------------DIEPITFLAKDIIHSDRYMDGERLSPDDEK 120
                                         DIEPIT LAKDIIHSDRYMDG+RL PDDEK
Sbjct: 61  LRVKQPPKLFDRIDDANYRKWKDKEDQILRDIEPITLLAKDIIHSDRYMDGQRLMPDDEK 120

Query: 121 VVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYI 174
            V++RLLAYHP  EDKIGCGLDS+MVDRHPQFR SRCLFVVRTDGGWIDFSYQKCLREYI
Sbjct: 121 AVMQRLLAYHPHCEDKIGCGLDSIMVDRHPQFRQSRCLFVVRTDGGWIDFSYQKCLREYI 180
[Close]
BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Match: A0A067KZT4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16094 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.000e-58
Identity = 120/202 (59.41%), Postives = 143/202 (70.79%), Query Frame = 1 

		  

Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSAS-- 60
           MAAP LLRG+P LRLR   H+HHRL   +  +PLR   CS++  +STR +++V ++    
Sbjct: 1   MAAPLLLRGIPLLRLR---HNHHRLAVRIL-SPLRQSWCSAA--DSTRLDEEVTTAEKST 60

Query: 61  ---------------------------ELFTDIEPITFLAKDIIHSDRYMDGERLSPDDE 120
                                      E+  DIEPIT L K+I+HSDRY+DGERL+ DDE
Sbjct: 61  AVLSARDPSNYPIWDDPDYRKWKDKEDEILRDIEPITCLTKEILHSDRYLDGERLTADDE 120

Query: 121 KVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREY 174
           K+V+E+LL YHP SEDKIG GLDS+MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLR Y
Sbjct: 121 KLVVEKLLTYHPNSEDKIGSGLDSIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAY 180
[Close]
BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Match: E0CPR0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g09930 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.500e-56
Identity = 120/202 (59.41%), Postives = 138/202 (68.32%), Query Frame = 1 

		  

Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVY------ 60
           M+AP LLR +P LRLR     HHRL  P+F    RP  CSS+  ES+RS+ +V       
Sbjct: 1   MSAPLLLRAVPLLRLR-----HHRLAAPLFTLAQRP-WCSST--ESSRSDVNVSYADKNT 60

Query: 61  -----------------------SSASELFTDIEPITFLAKDIIHSDRYMDGERLSPDDE 120
                                  +   E+  DIEPIT L K+I+HSDRYMDGERL+ +DE
Sbjct: 61  TVLSSRDPANYPRWDDPDFRKWKNREEEILRDIEPITSLTKEILHSDRYMDGERLTAEDE 120

Query: 121 KVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREY 174
           K V+E+LL YHP SEDKIGCGLD +MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLR Y
Sbjct: 121 KAVVEKLLIYHPHSEDKIGCGLDCIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAY 180
[Close]
BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Match: W9QX44_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008893 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.200e-55
Identity = 118/206 (57.28%), Postives = 138/206 (66.99%), Query Frame = 1 

		  

Query: 1   MAAPPLLRGLPFLRLRVFLHHHHRLLTPVFCTPLRPRLCSSSPSESTRSEDDVYSSAS-- 60
           MAAP LLRG P  RLR  LH HHRL       P  P LC+++ +ESTR +++  ++AS  
Sbjct: 29  MAAPFLLRGFPLHRLR--LHLHHRLAVGRISAPRWP-LCTAA-NESTRPDEEEKAAASSS 88

Query: 61  --------------------------------ELFTDIEPITFLAKDIIHSDRYMDGERL 120
                                           E+  DIEPI  L KDI+HS  YMDGERL
Sbjct: 89  TDNDGGELSVKESPKYPRWNDPDCRQWKDKEEEILRDIEPILLLTKDILHSRMYMDGERL 148

Query: 121 SPDDEKVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQK 173
           + +DEK V+E+LLAYHPRSEDKIGCGLDS+MVDRHPQFR+SRCLF++RTDG WIDFSYQK
Sbjct: 149 TAEDEKAVVEKLLAYHPRSEDKIGCGLDSIMVDRHPQFRNSRCLFIIRTDGAWIDFSYQK 208
[Close]
BLAST of Spo26407.1 vs. ExPASy Swiss-Prot
Match: DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.000e-27
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1 

		  

Query: 59  ELFTDIEPITFLAKDIIHSDRYMDGERLSPDDEKVVIERLLAYHPRSEDKIGCGLDSVMV 118
           ++  D  P+    + I+HS +Y  G+RLSPD ++ +++RLL YHP  + KIG G+D + V
Sbjct: 108 QILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVDYITV 167

Query: 119 DRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRNKYPYHAERFIREHFKR 171
             HP F +SRCLF+VR DG  +DFSY KC++  IR  YP +A+ FI  HF++
Sbjct: 168 GYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRK 219
[Close]
BLAST of Spo26407.1 vs. ExPASy Swiss-Prot
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.900e-25
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1 

		  

Query: 51   DDVYSSASELFTDIEPITFLAKDIIHSDRYMDGERLSPDDEKVVIERLLAYHPRSEDKIG 110
            D   S   EL +D+EP+    + I+H   Y DG+ +S DD+  V+E++L +HP+ E K+G
Sbjct: 1730 DSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLG 1789

Query: 111  CGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRNKYPYHAERFIREHFKR 170
             G+D + VD+H  F  SRC FVV TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1790 SGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
[Close]
BLAST of Spo26407.1 vs. TAIR (Arabidopsis)
Match: AT3G46630.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 203.8 bits (517), Expect = 8.800e-53
Identity = 113/202 (55.94%), Postives = 133/202 (65.84%), Query Frame = 1 

		  

Query: 6   LLRGLPFLRLRVFLHHHHR--LLTPVFCTPLRPRLCSS-------------SPSE----- 65
           LLR LP LR   FL+H H+  ++     +  R  LCS              SP E     
Sbjct: 6   LLRTLPLLR-NGFLNHRHQVGIVAGGILSHRRRLLCSLADRPQFYENNDSVSPVEGSGAA 65

Query: 66  -----------STRSEDDVYSS----ASELFTDIEPITFLAKDIIHSDRYMDGERLSPDD 125
                      S R ED  Y       +E+  DIEPI+ LAK+I+HSDRY+DGERL  +D
Sbjct: 66  AMNVTSPVVDNSWRYEDPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFED 125

Query: 126 EKVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRE 173
           EK+V+E+LL YHP S+DKIGCGLD +MVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLR 
Sbjct: 126 EKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRA 185
[Close]
BLAST of Spo26407.1 vs. TAIR (Arabidopsis)
Match: AT1G45230.1 (Protein of unknown function (DUF3223))

HSP 1 Score: 134.0 bits (336), Expect = 8.600e-32
Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = 1 

		  

Query: 35  RPRLCSSSPSESTRSEDDVYSSASELFTDIE--------PITFLAKDIIHSDRYMDGERL 94
           RPR+ S   SE    E++  S   E F D E        P+    + I+HS +Y + +RL
Sbjct: 72  RPRIASEESSEEEEEEEEENSEGDE-FVDWEDKILEVTVPLVGFVRMILHSGKYANRDRL 131

Query: 95  SPDDEKVVIERLLAYHPRSEDKIGCGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQK 154
           SP+ E+ +IE LL YHP  E KIGCG+D +MV  HP F  SRC+F+VR DG  +DFSY K
Sbjct: 132 SPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWK 191

Query: 155 CLREYIRNKYPYHAERFIREHFKR 171
           C++  I+ KYP +A+ FI  HF++
Sbjct: 192 CIKGLIKKKYPLYADSFILRHFRK 214
[Close]
BLAST of Spo26407.1 vs. TAIR (Arabidopsis)
Match: AT2G40030.1 (nuclear RNA polymerase D1B)

HSP 1 Score: 117.1 bits (292), Expect = 1.100e-26
Identity = 53/120 (44.17%), Postives = 75/120 (62.50%), Query Frame = 1 

		  

Query: 51   DDVYSSASELFTDIEPITFLAKDIIHSDRYMDGERLSPDDEKVVIERLLAYHPRSEDKIG 110
            D   S   EL +D+EP+    + I+H   Y DG+ +S DD+  V+E++L +HP+ E K+G
Sbjct: 1730 DSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLG 1789

Query: 111  CGLDSVMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLREYIRNKYPYHAERFIREHFKR 170
             G+D + VD+H  F  SRC FVV TDG   DFSY+K L  Y+  KYP  AE FI ++F +
Sbjct: 1790 SGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849
[Close]
BLAST of Spo26407.1 vs. TAIR (Arabidopsis)
Match: AT1G63020.1 (nuclear RNA polymerase D1A)

HSP 1 Score: 50.4 bits (119), Expect = 1.300e-6
Identity = 31/86 (36.05%), Postives = 50/86 (58.14%), Query Frame = 1 

		  

Query: 63   DIEPITFLAKDIIHSDRYMDGERLSPDDEKVVIERLLAYHPRSEDKIGCGLDSVMVDRHP 122
            +IE ++   K I+HS  Y   E L+ + ++ +++ +L  HP S +KIG G+  + V +  
Sbjct: 1338 NIELLSQSLKRILHS--YEINELLN-ERDEGLVKMVLQLHPNSVEKIGPGVKGIRVAK-S 1397

Query: 123  QFRHSRCLFVVRTDGGWIDFSYQKCL 149
            +   S C  VVR DG + DFSY KC+
Sbjct: 1398 KHGDSCCFEVVRIDGTFEDFSYHKCV 1419
The following BLAST results are available for this feature:
BLAST of Spo26407.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902218566|gb|KNA18069.1|1.1e-9286.0hypothetical protein SOVF_0741... [more]
gi|731314824|ref|XP_010688580.1|5.0e-6666.1PREDICTED: protein DCL, chloro... [more]
gi|802571400|ref|XP_012068293.1|8.6e-5859.4PREDICTED: protein DCL, chloro... [more]
gi|743786833|ref|XP_011029320.1|1.2e-5661.5PREDICTED: protein DCL, chloro... [more]
gi|747047499|ref|XP_011069724.1|1.6e-5659.9PREDICTED: protein DCL, chloro... [more]
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BLAST of Spo26407.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RGH0_SPIOL7.5e-9386.0Uncharacterized protein OS=Spi... [more]
A0A0J8D4T2_BETVU3.5e-6666.1Uncharacterized protein OS=Bet... [more]
A0A067KZT4_JATCU6.0e-5859.4Uncharacterized protein OS=Jat... [more]
E0CPR0_VITVI2.5e-5659.4Putative uncharacterized prote... [more]
W9QX44_9ROSA6.2e-5557.2Uncharacterized protein OS=Mor... [more]
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BLAST of Spo26407.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DCL_SOLLC6.0e-2745.5Protein DCL, chloroplastic OS=... [more]
NRPE1_ARATH1.9e-2544.1DNA-directed RNA polymerase V ... [more]
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BLAST of Spo26407.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT3G46630.18.8e-5355.9Protein of unknown function (D... [more]
AT1G45230.18.6e-3244.4Protein of unknown function (D... [more]
AT2G40030.11.1e-2644.1nuclear RNA polymerase D1B[more]
AT1G63020.11.3e-636.0nuclear RNA polymerase D1A[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021602Protein of unknown function DUF3223PFAMPF11523DUF3223coord: 73..148
score: 2.8
NoneNo IPR availableGENE3D3.10.450.40coord: 56..156
score: 7.8
NoneNo IPR availablePANTHERPTHR33415FAMILY NOT NAMEDcoord: 59..172
score: 8.9
NoneNo IPR availablePANTHERPTHR33415:SF4SUBFAMILY NOT NAMEDcoord: 59..172
score: 8.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009308 amine metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009657 plastid organization
biological_process GO:0009637 response to blue light
biological_process GO:0010218 response to far red light
biological_process GO:0042631 cellular response to water deprivation
biological_process GO:0006364 rRNA processing
biological_process GO:0032544 plastid translation
biological_process GO:0008152 metabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0006412 translation
biological_process GO:0009081 branched-chain amino acid metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0016311 dephosphorylation
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010114 response to red light
biological_process GO:0009853 photorespiration
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006479 protein methylation
biological_process GO:0046500 S-adenosylmethionine metabolic process
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005730 nucleolus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0048038 quinone binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0005543 phospholipid binding
molecular_function GO:0052655 L-valine transaminase activity
molecular_function GO:0052654 L-leucine transaminase activity
molecular_function GO:0052656 L-isoleucine transaminase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016772 transferase activity, transferring phosphorus-containing groups
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003993 acid phosphatase activity
RNA-Seq Expression