Spo26368 (gene) | SpinachBase

Overview


Name	Spo26368
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	BnaCnng51290D protein
Location	SpoScf_01911 : 75270 .. 75776 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACGTCAATAACTCCGCCGGCCCCACATTCCCCACCAAGCGTGCCCCCGTCAACACCGAAAACCCCGCCATAGAATCTAAGAAGCAGAAGCTCGAAACACCAGATAACAATGGCAAAGAAGCTCCTGAACCTCTTGAACAAACCCTAGAAAACGACGTCGTACAGAAAGGAAAAGGGAAAGCAGAAGAGAAACTTATAGAAGATGAAGAAGAAGAGAAGGGTTTCAATGGAAAAGCTGTAATTGACAGGAAAGGGAAGGGCATTCTGATTGAAGAAGACGAGGAAGACGATGATGATTCCGATGATTCTGACTCCGATGATTCCGTTATCGGCGGAGAATTTTCTGACGACAGTGATTTCGTTGAGGATCCCCTCGCTGAAGTCGATCTCGACAACATTCTTCCTTCGAGAACTCGCCGGAAAACCATTAATCCTGGTGCTTACCTTGCTACTGATATTCCGGCAGAGGATTCCGATGAGAGCGATGACCCTGATGCTTAG

mRNA sequence

ATGGCGGACGTCAATAACTCCGCCGGCCCCACATTCCCCACCAAGCGTGCCCCCGTCAACACCGAAAACCCCGCCATAGAATCTAAGAAGCAGAAGCTCGAAACACCAGATAACAATGGCAAAGAAGCTCCTGAACCTCTTGAACAAACCCTAGAAAACGACGTCGTACAGAAAGGAAAAGGGAAAGCAGAAGAGAAACTTATAGAAGATGAAGAAGAAGAGAAGGGTTTCAATGGAAAAGCTGTAATTGACAGGAAAGGGAAGGGCATTCTGATTGAAGAAGACGAGGAAGACGATGATGATTCCGATGATTCTGACTCCGATGATTCCGTTATCGGCGGAGAATTTTCTGACGACAGTGATTTCGTTGAGGATCCCCTCGCTGAAGTCGATCTCGACAACATTCTTCCTTCGAGAACTCGCCGGAAAACCATTAATCCTGGTGCTTACCTTGCTACTGATATTCCGGCAGAGGATTCCGATGAGAGCGATGACCCTGATGCTTAG

Coding sequence (CDS)

ATGGCGGACGTCAATAACTCCGCCGGCCCCACATTCCCCACCAAGCGTGCCCCCGTCAACACCGAAAACCCCGCCATAGAATCTAAGAAGCAGAAGCTCGAAACACCAGATAACAATGGCAAAGAAGCTCCTGAACCTCTTGAACAAACCCTAGAAAACGACGTCGTACAGAAAGGAAAAGGGAAAGCAGAAGAGAAACTTATAGAAGATGAAGAAGAAGAGAAGGGTTTCAATGGAAAAGCTGTAATTGACAGGAAAGGGAAGGGCATTCTGATTGAAGAAGACGAGGAAGACGATGATGATTCCGATGATTCTGACTCCGATGATTCCGTTATCGGCGGAGAATTTTCTGACGACAGTGATTTCGTTGAGGATCCCCTCGCTGAAGTCGATCTCGACAACATTCTTCCTTCGAGAACTCGCCGGAAAACCATTAATCCTGGTGCTTACCTTGCTACTGATATTCCGGCAGAGGATTCCGATGAGAGCGATGACCCTGATGCTTAG

Protein sequence

MADVNNSAGPTFPTKRAPVNTENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQKGKGKAEEKLIEDEEEEKGFNGKAVIDRKGKGILIEEDEEDDDDSDDSDSDDSVIGGEFSDDSDFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIPAEDSDESDDPDA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo26368.1	Spo26368.1	mRNA

Homology

[Close]

BLAST of Spo26368.1 vs. NCBI nr
Match: gi|902234623|gb|KNA23518.1| (hypothetical protein SOVF_024080 [Spinacia oleracea])

HSP 1 Score: 312.4 bits (799), Expect = 4.900e-82
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


		  
Query: 1   MADVNNSAGPTFPTKRAPVNTENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQKGK 60
           MADVNNSAGPTFPTKRAPVNTENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQKGK
Sbjct: 1   MADVNNSAGPTFPTKRAPVNTENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQKGK 60

Query: 61  GKAEEKLIEDEEEEKGFNGKAVIDRKGKGILIEEDEEDDDDSDDSDSDDSVIGGEFSDDS 120
           GKAEEKLIEDEEEEKGFNGKAVIDRKGKGILIEEDEEDDDDSDDSDSDDSVIGGEFSDDS
Sbjct: 61  GKAEEKLIEDEEEEKGFNGKAVIDRKGKGILIEEDEEDDDDSDDSDSDDSVIGGEFSDDS 120

Query: 121 DFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIPAEDSDESDDPDA 169
           DFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIPAEDSDESDDPDA
Sbjct: 121 DFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIPAEDSDESDDPDA 168

[Close]

BLAST of Spo26368.1 vs. NCBI nr
Match: gi|731343626|ref|XP_010682984.1| (PREDICTED: pheromone-processing carboxypeptidase KEX1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 154.8 bits (390), Expect = 1.300e-34
Identity = 105/177 (59.32%), Postives = 125/177 (70.62%), Query Frame = 1


		  
Query: 1   MADVNNSAGPTFPTKRAPVNT-ENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQKG 60
           MADV NSA PTFPTKR P +T ++   E KKQKL+ P+NN         Q  +ND VQK 
Sbjct: 1   MADVKNSAEPTFPTKRIPDSTTQDSTNEPKKQKLDNPENN---LDNNGIQPQQNDDVQKE 60

Query: 61  KGKAEEKLIEDEEEEKGFNGKAVIDRKGKGILIEEDEEDDDD------SDDSDSDDSVIG 120
           K + EE+ I++E      +GKAVIDRKGKGILIEED+E+D+D       DDSDSDDSVIG
Sbjct: 61  KQQVEEEEIQEELS----SGKAVIDRKGKGILIEEDDEEDEDVDEDDSDDDSDSDDSVIG 120

Query: 121 GEFSDDSDFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIPAED--SDESDDPDA 169
            +  +DSDF +DPLAEVDLDNILPSRTRRK I+PG YL  DIP +D   D+ DDPDA
Sbjct: 121 DD-EEDSDFADDPLAEVDLDNILPSRTRRKVIHPGVYLRNDIPQDDDSDDDIDDPDA 169

[Close]

BLAST of Spo26368.1 vs. NCBI nr
Match: gi|658011973|ref|XP_008341248.1| (PREDICTED: histone H2A.Z-specific chaperone CHZ1-like [Malus domestica])

HSP 1 Score: 113.6 bits (283), Expect = 3.300e-22
Identity = 88/192 (45.83%), Postives = 109/192 (56.77%), Query Frame = 1


		  
Query: 1   MADVNNSAGPTFPTKRAPVNT--ENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQK 60
           MA+  +   PTFP KR P  +  + P   +K QKLE PD++   A E   QT EN     
Sbjct: 1   MAEARDQGEPTFPAKRKPDLSCGDQPDCPNKTQKLEVPDDS-PSAAEAKSQTPENFNNNS 60

Query: 61  GKGKA----------------EEKLIEDEEEEKGFNGKAVIDRKGKGILIEED------E 120
             G+                 EE   E+EE+++  NGKA +DRKGKGI+ ++       E
Sbjct: 61  SAGEEKTCKFEANADLEDEDEEEDYEEEEEDDEKSNGKAEVDRKGKGIMRDDKGKGKLVE 120

Query: 121 EDDDDSDDSDSDDSVIGGEFSD-DSDFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDI 168
           EDDDDSDD  SD    G EF D DSD  +DPLAEVDLDNILPSRTRR+ + PG Y+A DI
Sbjct: 121 EDDDDSDDDSSDG---GSEFEDGDSDLSDDPLAEVDLDNILPSRTRRRQVQPGVYIANDI 180

[Close]

BLAST of Spo26368.1 vs. NCBI nr
Match: gi|694406430|ref|XP_009378025.1| (PREDICTED: nucleolin [Pyrus x bretschneideri])

HSP 1 Score: 109.0 bits (271), Expect = 8.200e-21
Identity = 88/193 (45.60%), Postives = 109/193 (56.48%), Query Frame = 1


		  
Query: 1   MADVNNSAGPTFPTKRAPVNT--ENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQK 60
           MA+  +   PTFP KR P  +  + P   +K QKLE PD++   A E   QT EN     
Sbjct: 1   MAETKDQGEPTFPAKRKPDLSCGDQPDCPNKTQKLEVPDDS-PSAAEAKSQTPENFKNNS 60

Query: 61  GKGKA----------------EEKLIEDEEEEKGFNGKAVIDRKGKGILIEED------E 120
             G+                 EE   E+EEE++  NGKA +DRKGKGI+ ++       E
Sbjct: 61  SAGEEKTCKFEANADLEDEDEEEDYEEEEEEDEKSNGKAEMDRKGKGIMRDDKGKGKLVE 120

Query: 121 EDDDDSDDSDSDDSVIGGEFSD-DSDFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDI 168
           EDDDDSDD  SD    G EF D DSD  +DPLAEVDLDNILPSRTRR+ + PG Y+A D 
Sbjct: 121 EDDDDSDDDSSDG---GSEFEDGDSDLSDDPLAEVDLDNILPSRTRRRQVQPGVYIANDN 180

[Close]

BLAST of Spo26368.1 vs. NCBI nr
Match: gi|645250082|ref|XP_008231043.1| (PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Prunus mume])

HSP 1 Score: 107.8 bits (268), Expect = 1.800e-20
Identity = 88/192 (45.83%), Postives = 112/192 (58.33%), Query Frame = 1


		  
Query: 1   MADVNNSAGPTFPTKRAP-VNTENPAIESKK-QKLETPDNNGKEA------PEPLEQTLE 60
           MA+  N   PTFP KR P ++ E+ A   KK  KLE  D +   A      PE  +Q   
Sbjct: 1   MAETKNLGEPTFPVKRKPDLSCEDQADYPKKTHKLEVSDISSSLAEGKTQDPENFDQNSS 60

Query: 61  NDVVQKGKGKA------EEKLIEDEEEEKG---FNGKAVIDRKGKGILIEED------EE 120
               +  K +A      EE  +ED++E++     NGKA +DRKGKGI+ ++       EE
Sbjct: 61  VAEEKNDKFEANADPEDEEDFVEDDDEDEDGEKSNGKAEVDRKGKGIMRDDKGKGKLIEE 120

Query: 121 DDDDSDDSDSDDSVIGGEFSD-DSDFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIP 169
           DDDDSDD  SD    G EF D DSD  +DPLAEVDLDNILPSRTRR+ + PG Y+A DI 
Sbjct: 121 DDDDSDDDSSDG---GSEFEDGDSDLSDDPLAEVDLDNILPSRTRRRQVQPGVYMANDIG 180

[Close]

BLAST of Spo26368.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVN0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_024080 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 3.400e-82
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


		  
Query: 1   MADVNNSAGPTFPTKRAPVNTENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQKGK 60
           MADVNNSAGPTFPTKRAPVNTENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQKGK
Sbjct: 1   MADVNNSAGPTFPTKRAPVNTENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQKGK 60

Query: 61  GKAEEKLIEDEEEEKGFNGKAVIDRKGKGILIEEDEEDDDDSDDSDSDDSVIGGEFSDDS 120
           GKAEEKLIEDEEEEKGFNGKAVIDRKGKGILIEEDEEDDDDSDDSDSDDSVIGGEFSDDS
Sbjct: 61  GKAEEKLIEDEEEEKGFNGKAVIDRKGKGILIEEDEEDDDDSDDSDSDDSVIGGEFSDDS 120

Query: 121 DFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIPAEDSDESDDPDA 169
           DFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIPAEDSDESDDPDA
Sbjct: 121 DFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIPAEDSDESDDPDA 168

[Close]

BLAST of Spo26368.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C484_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g152080 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.000e-35
Identity = 105/177 (59.32%), Postives = 125/177 (70.62%), Query Frame = 1


		  
Query: 1   MADVNNSAGPTFPTKRAPVNT-ENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQKG 60
           MADV NSA PTFPTKR P +T ++   E KKQKL+ P+NN         Q  +ND VQK 
Sbjct: 1   MADVKNSAEPTFPTKRIPDSTTQDSTNEPKKQKLDNPENN---LDNNGIQPQQNDDVQKE 60

Query: 61  KGKAEEKLIEDEEEEKGFNGKAVIDRKGKGILIEEDEEDDDD------SDDSDSDDSVIG 120
           K + EE+ I++E      +GKAVIDRKGKGILIEED+E+D+D       DDSDSDDSVIG
Sbjct: 61  KQQVEEEEIQEELS----SGKAVIDRKGKGILIEEDDEEDEDVDEDDSDDDSDSDDSVIG 120

Query: 121 GEFSDDSDFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIPAED--SDESDDPDA 169
            +  +DSDF +DPLAEVDLDNILPSRTRRK I+PG YL  DIP +D   D+ DDPDA
Sbjct: 121 DD-EEDSDFADDPLAEVDLDNILPSRTRRKVIHPGVYLRNDIPQDDDSDDDIDDPDA 169

[Close]

BLAST of Spo26368.1 vs. UniProtKB/TrEMBL
Match: M5WTN0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011904mg PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.200e-20
Identity = 87/191 (45.55%), Postives = 114/191 (59.69%), Query Frame = 1


		  
Query: 1   MADVNNSAGPTFPTKRAP-VNTENPAIESKK-QKLETPDNNGKEA------PEPLEQ--T 60
           MA+ NN   PTFP KR P ++ E+ A   KK  KLE  D +   A      PE  +Q  +
Sbjct: 1   MAETNNLGEPTFPVKRKPDLSCEDQADYPKKTHKLEVSDISSSLAEGKTQDPENFDQNSS 60

Query: 61  LENDVVQKGKGKA----EEKLIEDEEEEKG---FNGKAVIDRKGKGILIEED------EE 120
           +  ++  K +  A    EE  +ED++E++     NGKA +DRKGKGI+ ++       EE
Sbjct: 61  VAEEINDKFEANADPEDEEDFVEDDDEDEDGEKSNGKAEVDRKGKGIMRDDKGKGKLIEE 120

Query: 121 DDDDSDDSDSDDSVIGGEFSD-DSDFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIP 168
           DDDDSDD  SD    G EF D DSD  +DPLAEVDL NILPSRTRR+ + PG Y+A DI 
Sbjct: 121 DDDDSDDDSSDG---GSEFEDGDSDLSDDPLAEVDLHNILPSRTRRRQVQPGVYMANDIG 180

[Close]

BLAST of Spo26368.1 vs. UniProtKB/TrEMBL
Match: V4UD83_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016987mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.300e-20
Identity = 80/172 (46.51%), Postives = 109/172 (63.37%), Query Frame = 1


		  
Query: 1   MADVNNSAGPTFPTKRAP-VNTENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQKG 60
           M +  N   PT P+KR P V+ E+    +K +KL++ +NN  + PE   +  +  +V   
Sbjct: 1   MVETKNPEEPTLPSKRKPDVSCEDHP--NKARKLQSSNNNS-QLPEDKSRGPDEKLVNSD 60

Query: 61  KGKAEEKLIEDEEEEKGFNGKAVIDRKGKGILIEEDEEDDD--DSDDSDSDDSVIGGEFS 120
             + +E   + E +++  NG+ V+DRKGKGILIEED+ DDD  D DD D DDS  G   S
Sbjct: 61  -AQLDENGDDGENDDEENNGEVVVDRKGKGILIEEDDGDDDSSDDDDDDDDDSSDGWNQS 120

Query: 121 D-DSDFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIPAEDSDESDDPDA 169
           D +SD  +DPLAEVDLDNILPSRTRR+   PG ++A D+  +DSD SDD DA
Sbjct: 121 DGESDLSDDPLAEVDLDNILPSRTRRRVTKPGEFVANDLADDDSD-SDDEDA 167

[Close]

BLAST of Spo26368.1 vs. UniProtKB/TrEMBL
Match: G7KW84_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_7g083640 PE=4 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 4.500e-18
Identity = 73/168 (43.45%), Postives = 95/168 (56.55%), Query Frame = 1


		  
Query: 3   DVNNSAGPTFPTKRAPVNTENPAIESKKQKLETPDNNGKEAPEPLEQTLENDVVQKGKGK 62
           + NN   PTFPTKR P   E   + +K  KL +     +E   P      +D V   + +
Sbjct: 5   ETNNHEEPTFPTKRKPDQEETHHLPNKNPKLTSTTTVDQETELPTTVNSSSDAVPNNEPE 64

Query: 63  AE-EKLIEDEEEEKGFNGKAVIDRKGKGIL---------IEEDEEDDDDSDDSD-SDDSV 122
              +   ED+E+E+  + + V+DRKGKGI+         IEE++EDDDDSDDSD SDD  
Sbjct: 65  NNTDDDDEDDEDEENSDEEPVVDRKGKGIMRDDKGKGKMIEEEDEDDDDSDDSDDSDDDS 124

Query: 123 IGGEFSDDSDFVEDPLAEVDLDNILPSRTRRKTINPGAYLATDIPAED 160
            G     DSDF +DPLAEVDLDNILPSRTRR+T   G  ++   P  D
Sbjct: 125 DGNVSGSDSDFSDDPLAEVDLDNILPSRTRRRTAQSGVRISGGTPNAD 172

[Close]

BLAST of Spo26368.1 vs. TAIR (Arabidopsis)
Match: AT1G12830.1 (unknown protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.400e-15
Identity = 74/215 (34.42%), Postives = 105/215 (48.84%), Query Frame = 1


		  
Query: 1   MADVNNSAGPTFPTKRAP-------------VNTENPAIESKKQKLETPDNNG------- 60
           MADV N    +FP KR                   NP++ S   + +  + NG       
Sbjct: 1   MADVENQQDSSFPVKRKSDLFCQDQDNVTNKAQKLNPSLNSADSESKDGETNGSGQIENL 60

Query: 61  ----------------KEAPEPLEQTLENDVVQKGKGKAEEKLIEDEEEEKGFNGKAVID 120
                           ++A E +E  +  DV  + + + EE   ED+EEE+    + V+D
Sbjct: 61  NSSTEETIGAESSVLSEKAAEEVESGVIGDVGAEEEQEDEEDEEEDDEEEE--EEEEVVD 120

Query: 121 RKGKGILIEE-------DEEDDDDSDDSDSDDSVIGGEFSDDSDFVEDPLAEVDLDNILP 169
           RKGKGI  E+       + E+ DD DDSD D+   G +  D+SDF +DPLAEVDLDNILP
Sbjct: 121 RKGKGISREDKGKGKMIEVEESDDEDDSDDDEDDEGFDEDDESDFSDDPLAEVDLDNILP 180

The following BLAST results are available for this feature:

BLAST of Spo26368.1 vs. NCBI nr
BLAST of Spo26368.1 vs. UniProtKB/TrEMBL
BLAST of Spo26368.1 vs. ExPASy Swiss-Prot
BLAST of Spo26368.1 vs. TAIR (Arabidopsis)

BLAST of Spo26368.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902234623\|gb\|KNA23518.1\|	4.9e-82	100.	hypothetical protein SOVF_0240...	[more]
gi\|731343626\|ref\|XP_010682984.1\|	1.3e-34	59.3	PREDICTED: pheromone-processin...	[more]
gi\|658011973\|ref\|XP_008341248.1\|	3.3e-22	45.8	PREDICTED: histone H2A.Z-speci...	[more]
gi\|694406430\|ref\|XP_009378025.1\|	8.2e-21	45.6	PREDICTED: nucleolin [Pyrus x ...	[more]
gi\|645250082\|ref\|XP_008231043.1\|	1.8e-20	45.8	PREDICTED: histone H2A.Z-speci...	[more]

BLAST of Spo26368.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RVN0_SPIOL	3.4e-82	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C484_BETVU	9.0e-35	59.3	Uncharacterized protein OS=Bet...	[more]
M5WTN0_PRUPE	2.2e-20	45.5	Uncharacterized protein OS=Pru...	[more]
V4UD83_9ROSI	6.3e-20	46.5	Uncharacterized protein OS=Cit...	[more]
G7KW84_MEDTR	4.5e-18	43.4	Uncharacterized protein OS=Med...	[more]

BLAST of Spo26368.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo26368.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G12830.1	1.4e-15	34.4	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019098	Histone chaperone domain CHZ	PFAM	PF09649	CHZ	coord: 124..146 score: 1.
None	No IPR available	PANTHER	PTHR36899	FAMILY NOT NAMED	coord: 1..167 score: 3.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048229	gametophyte development
biological_process	GO:0000719	photoreactive repair
biological_process	GO:0009409	response to cold
biological_process	GO:0009411	response to UV
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006833	water transport
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0009651	response to salt stress
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0007030	Golgi organization
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009316	3-isopropylmalate dehydratase complex
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003861	3-isopropylmalate dehydratase activity
molecular_function	GO:0016853	isomerase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo11404	0.68	Barchart \| Table
Spo08682	0.67	Barchart \| Table
Spo21317	0.66	Barchart \| Table
Spo25990	0.66	Barchart \| Table
Spo11336	0.65	Barchart \| Table