Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGAATCCCAGACAATAAGAGCAAACTACAAGCATCAACTGAAGAAGAAGATGATGCTTTCGCGAAACCGAAGCGCTAGGATAAGTTTCTCAGCAAACTTACCTAGTGATGTATGTGGAGTTTGGGCAGATAATGCTATGTGTTTAGTATTGGATACTGAAGATCCGTTTACCGAGTTGAAACGGTCGATTCTCGAGATGGTTCGAGAGGTTGGTGTTTGTAATTGGGGGGAGATGGAGGAGCTTGTTTACTGTTATATTGCTCTGAATTCCTCTGATGTTCATAGGTTTATTCATGATGCTTTTCTTAGCTTGTTTTGCTGA ATGGATGAATCCCAGACAATAAGAGCAAACTACAAGCATCAACTGAAGAAGAAGATGATGCTTTCGCGAAACCGAAGCGCTAGGATAAGTTTCTCAGCAAACTTACCTAGTGATGTATGTGGAGTTTGGGCAGATAATGCTATGTGTTTAGTATTGGATACTGAAGATCCGTTTACCGAGTTGAAACGGTCGATTCTCGAGATGGTTCGAGAGGTTGGTGTTTGTAATTGGGGGGAGATGGAGGAGCTTGTTTACTGTTATATTGCTCTGAATTCCTCTGATGTTCATAGGTTTATTCATGATGCTTTTCTTAGCTTGTTTTGCTGA ATGGATGAATCCCAGACAATAAGAGCAAACTACAAGCATCAACTGAAGAAGAAGATGATGCTTTCGCGAAACCGAAGCGCTAGGATAAGTTTCTCAGCAAACTTACCTAGTGATGTATGTGGAGTTTGGGCAGATAATGCTATGTGTTTAGTATTGGATACTGAAGATCCGTTTACCGAGTTGAAACGGTCGATTCTCGAGATGGTTCGAGAGGTTGGTGTTTGTAATTGGGGGGAGATGGAGGAGCTTGTTTACTGTTATATTGCTCTGAATTCCTCTGATGTTCATAGGTTTATTCATGATGCTTTTCTTAGCTTGTTTTGCTGA MDESQTIRANYKHQLKKKMMLSRNRSARISFSANLPSDVCGVWADNAMCLVLDTEDPFTELKRSILEMVREVGVCNWGEMEELVYCYIALNSSDVHRFIHDAFLSLFC Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo26183.1 vs. NCBI nr
Match: gi|902210999|gb|KNA16588.1| (hypothetical protein SOVF_087840 [Spinacia oleracea]) HSP 1 Score: 223.4 bits (568), Expect = 1.900e-55 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
BLAST of Spo26183.1 vs. NCBI nr
Match: gi|870865397|gb|KMT16453.1| (hypothetical protein BVRB_3g050760 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 155.2 bits (391), Expect = 6.400e-35 Identity = 75/99 (75.76%), Postives = 86/99 (86.87%), Query Frame = 1
BLAST of Spo26183.1 vs. NCBI nr
Match: gi|731424603|ref|XP_010662940.1| (PREDICTED: transcription repressor OFP10-like [Vitis vinifera]) HSP 1 Score: 116.7 bits (291), Expect = 2.500e-23 Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 1
BLAST of Spo26183.1 vs. NCBI nr
Match: gi|224132588|ref|XP_002321359.1| (hypothetical protein POPTR_0015s00660g [Populus trichocarpa]) HSP 1 Score: 109.4 bits (272), Expect = 4.000e-21 Identity = 51/93 (54.84%), Postives = 70/93 (75.27%), Query Frame = 1
BLAST of Spo26183.1 vs. NCBI nr
Match: gi|901807957|gb|KMZ64906.1| (Ovate family protein 4 [Zostera marina]) HSP 1 Score: 102.4 bits (254), Expect = 4.900e-19 Identity = 53/97 (54.64%), Postives = 69/97 (71.13%), Query Frame = 1
BLAST of Spo26183.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAP5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_087840 PE=4 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 1.300e-55 Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
BLAST of Spo26183.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWW6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050760 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 4.500e-35 Identity = 75/99 (75.76%), Postives = 86/99 (86.87%), Query Frame = 1
BLAST of Spo26183.1 vs. UniProtKB/TrEMBL
Match: F6H791_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00740 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 1.800e-23 Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 1
BLAST of Spo26183.1 vs. UniProtKB/TrEMBL
Match: B9IDH1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s00660g PE=4 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 2.800e-21 Identity = 51/93 (54.84%), Postives = 70/93 (75.27%), Query Frame = 1
BLAST of Spo26183.1 vs. UniProtKB/TrEMBL
Match: A0A0K9P795_ZOSMR (Ovate family protein 4 OS=Zostera marina GN=ZOSMA_345G00230 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 3.400e-19 Identity = 53/97 (54.64%), Postives = 69/97 (71.13%), Query Frame = 1
BLAST of Spo26183.1 vs. TAIR (Arabidopsis)
Match: AT1G79960.1 (ovate family protein 14) HSP 1 Score: 47.4 bits (111), Expect = 6.600e-6 Identity = 23/70 (32.86%), Postives = 44/70 (62.86%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo26183.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo26183.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo26183.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo26183.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|