Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTTCATGAAATAAAAGCTACTAATTCTAAATACTAGCTATTGGCAAAATAGTGATAATAATTGTAAACCCTCGTTAAACAACTATTTCATTAAGTTCTAACCACGACCAAAACTCTAATACGTAGTATCTCCTTTCACCTAACAAATCCTAAAATTGTACACCATTTATTCTTATAATTAATCAAAAGCTTCAGGAGGGGAAATCATTTAAAAAAAATAAAATCCACTCTAATTATTAGCCACACAATTACAAAGCTGATCTTATTAGTTTGTAAAAGTGTAATGCTAATGATATTGTTCCCTAGTTCAATAGAAAATCATTAGCCATATCCAGTACAGAAAAGCATACATCCTTGTGTCAGACACACGATTCAAGAAAACCCCATAATCCATTTTCCCTGTTTTAAAACACACTATTAAGAAAGAGTGGCAGAAGAAGGGATAAAGATATTCATGGTGGTACTAAATTTCCAACCAGTCCAATTCAGAGCCAATATAGCTCACTGCAGTGGGCAAAGACATGAAAATGGCAGCAGAAATAAAAGAATGGTGATTTTCCGGCCTCGATGTCGAATAACAGAGCCAACAGGTGTGCCTGCTCCTATGGGACAAAAGACAAAGTACAAAGATGGGTTTTTTGAGATGATTTTCATGAATCTTTTTGCTAGGAAGATGGAGAAATTTGCATCATCTTCTGCTTCAAAGAAGAAACAGGAGAAAGATGATGGGTGGTTTAATTACGATTATGAGAGTTTTGTGGATGTGTCGAAGAGAGTAATGCAGGGAAGATCACGGCCACAGCAGCAGGAAGTTGTCAGGAAAGTTCTCTTGTCTATGCTCCCTCCTGGTGCCCCGGCTCAGGTAATTCCTCCTCCTCTCATAAATTAGTTAATTTATACTACCATGAGTGAATTCTTAACAAATAATTATAAATTGTTTAATATGTGAAATCTAGAAATGGAATTTATTTATCTTCCCATTCTATGATTCTACATTTCTACATTGATCCTACCGAAATTGTTCAATCCCATTTTGTGGTACTACATTGTAATGGACTAAATCAAAATGACTCTTAACCCTTTCGCTTCCTTTCCATCCATGGAGTACAAGATGCTCGTCCCGTTATTGTTTTTGGGTCAATCGGAACAACCACTCTGCAATTGCGGGGTAAGGTTGCGAACGTCCAACCCCTCCCGGAGCCTATGACATCGATCGGTTGATCCTATCGAAAAATTTGCTTCCCTCTAGCATCAGCTGAAAATATATTAACTCTGTTTCAAAATGATCTTTACACTTTCTGTTTTAGTGTGTTTCATAATGTTTTCTACACTTTGCTTTATTCTATTTTTTGATATGAAAATTTACTACCTTATCCTTCTTACCCACCAATATATACAATTTTGACACCCACGTACATAGTGGGCTTGTATGAAATTTATTATATCTAGAGTGTTGGATCCTCCGATCCCTTGTCGGACACGACACCCTTATAAGAGTCTGAGCAACATAGTATTCAACCTACTTTTCTACTTTTGTCTAATTGCCGGAAGTATTGAAAAGGGACTTGATGATTTTCTGGTTAATGATGTGCAGTTCAGAAAATTGTTTCCGCCAACAAAATGGGCAGCTGAGTTCAATGCAGCCCTTACAGTGCCGTTCTTCCACTGGCTTGTTGGACCTTCTGAGGTAATACACTCCCTTACCCTGCTCATTTCCCTTCCCCCATTCCCCTCCTAAAAGGGGAAGAAAACTAATGTTTGATAGTCATGATTCAAAGTTTTTCCAATAGGTAAATTTTTCGAGTAAGAACAGCTACTTCATAGATAATGCTAATGCAATGCACATTAAAAGAAAAAACTCACGCAATTAATAAAGATAATTCTGAAATGAACCTGGTTTTAGCGGAGAAGTATTCGTTTTATGCAGCCTCCCCCATGTAATGTGGATCTCCACTCATTGTCTGAAATGATGACTTGCCTAATTCAGTCCATGAAACCTGAAAAGGAGATAACATATAAGGTTGATGCAGAATAAGGATCCATATAGGAATACTAGAGGGAACTTCTTGACTTCTATATATTAAACAACTGTGTAGTTGATCTTAGTAGTTAGTGTTCATGAATAAAAGAACTGGACAACGTTGTTAATTGTTAAGAATAATTCAGCATATGCTTTTCTCCAAAGCTTTAATGCATATATGAATGTAGGTAATTGAAGTGGAAGTAAATGGAGTGAAACAAAGAAGTGGTGTTCTTATAAAGAAGTGCAGGTAAGCTGTATTACAAGTTCTATTAGTAACATTTACAGACATCCCCATTTGATTTGGAGAACAAAATATTTCTCAAGAAAACTAGTCACTCCAACCAATGAAAAACTAACCGATTTTCTGACTAATCTTCGTCATTGTCTCACCAAGGTATTTGGAGAACAGTGGTTGCGTAGGAATGTGTGTGAATATGTGCAAAATCCCAACACAAGACTTCTTCACCAGTGAATTCGGACTTCCTCTGACAATGAATCCAAGTATGTTTCTGCACTCTCTTGAAATCTATACAGCTGAAGGAGGTCGATTATCAAAATAATTGAGTGGTTGATTAGTCTACAGTTCATACTAATCAAACGACCAATTAGTATGAACTGTAGACTAAAAGCATGGTCATAATTTCCTTAAACCCTGAACTCCATCAGATTGTTCACCTCTGAATCAAAAGGGATTATACTATCAGTTCAAGTATTTTTTGTATCTTATCTGTTCATTCTGTTTTTAGTTTCTCAATAACAAGCCCTTTTAACAGTCTTTAATCTAAAATTTTGAGCAGAATTTGAAGATATGAGCTGCGAAATGGTGTATGGGCAAGTTCCACCACCATTCGAGGAAGATGAAGTCTCCAAACAGGCTTGTTATAAGGATTTATGTAAGCACAAAGAACTTCAATTACATATTCAATGGAATTAGAAACGCTGTTTTGAGAATATTCTAACTAACAGCTTGTGAATACAGGTTCCATGGCAAATCCAAGTGCAAACCTTTGTCCCAAATTACTATCATAAGAGATGCCTGCGCGATTTCAGTAATTACCTACTTCAACAACTAGTGGAACCAGAGTTTATAACTATATACTGAGAAGATAACACACATTTATACATGTATAGAAACAAACAAGTTCAACCTATGTAGTCATCAATTTTTTGCTCCTATCTGAACATTGAACATTATTCATCCAATGATCAAATCTAAGCGCGCTCGCTGTGTTCTGTAATAGGCATTAGTCTCCCTCATTTGTACAAAGATCATGTACAGACTGTTGGAGGG ACTTCATGAAATAAAAGCTACTAATTCTAAATACTAGCTATTGGCAAAATAGTGATAATAATTGTAAACCCTCGTTAAACAACTATTTCATTAAGTTCTAACCACGACCAAAACTCTAATACGTAGTATCTCCTTTCACCTAACAAATCCTAAAATTGTACACCATTTATTCTTATAATTAATCAAAAGCTTCAGGAGGGGAAATCATTTAAAAAAAATAAAATCCACTCTAATTATTAGCCACACAATTACAAAGCTGATCTTATTAGTTTGTAAAAGTGTAATGCTAATGATATTGTTCCCTAGTTCAATAGAAAATCATTAGCCATATCCAGTACAGAAAAGCATACATCCTTGTGTCAGACACACGATTCAAGAAAACCCCATAATCCATTTTCCCTGTTTTAAAACACACTATTAAGAAAGAGTGGCAGAAGAAGGGATAAAGATATTCATGGTGGTACTAAATTTCCAACCAGTCCAATTCAGAGCCAATATAGCTCACTGCAGTGGGCAAAGACATGAAAATGGCAGCAGAAATAAAAGAATGGTGATTTTCCGGCCTCGATGTCGAATAACAGAGCCAACAGGTGTGCCTGCTCCTATGGGACAAAAGACAAAGTACAAAGATGGGTTTTTTGAGATGATTTTCATGAATCTTTTTGCTAGGAAGATGGAGAAATTTGCATCATCTTCTGCTTCAAAGAAGAAACAGGAGAAAGATGATGGGTGGTTTAATTACGATTATGAGAGTTTTGTGGATGTGTCGAAGAGAGTAATGCAGGGAAGATCACGGCCACAGCAGCAGGAAGTTGTCAGGAAAGTTCTCTTGTCTATGCTCCCTCCTGGTGCCCCGGCTCAGTTCAGAAAATTGTTTCCGCCAACAAAATGGGCAGCTGAGTTCAATGCAGCCCTTACAGTGCCGTTCTTCCACTGGCTTGTTGGACCTTCTGAGGTAATTGAAGTGGAAGTAAATGGAGTGAAACAAAGAAGTGGTGTTCTTATAAAGAAGTGCAGGTATTTGGAGAACAGTGGTTGCGTAGGAATGTGTGTGAATATGTGCAAAATCCCAACACAAGACTTCTTCACCAGTGAATTCGGACTTCCTCTGACAATGAATCCAAAATTTGAAGATATGAGCTGCGAAATGGTGTATGGGCAAGTTCCACCACCATTCGAGGAAGATGAAGTCTCCAAACAGGCTTGTTATAAGGATTTATGTTCCATGGCAAATCCAAGTGCAAACCTTTGTCCCAAATTACTATCATAAGAGATGCCTGCGCGATTTCAGTAATTACCTACTTCAACAACTAGTGGAACCAGAGTTTATAACTATATACTGAGAAGATAACACACATTTATACATGTATAGAAACAAACAAGTTCAACCTATGTAGTCATCAATTTTTTGCTCCTATCTGAACATTGAACATTATTCATCCAATGATCAAATCTAAGCGCGCTCGCTGTGTTCTGTAATAGGCATTAGTCTCCCTCATTTGTACAAAGATCATGTACAGACTGTTGGAGGG ATGGTGGTACTAAATTTCCAACCAGTCCAATTCAGAGCCAATATAGCTCACTGCAGTGGGCAAAGACATGAAAATGGCAGCAGAAATAAAAGAATGGTGATTTTCCGGCCTCGATGTCGAATAACAGAGCCAACAGGTGTGCCTGCTCCTATGGGACAAAAGACAAAGTACAAAGATGGGTTTTTTGAGATGATTTTCATGAATCTTTTTGCTAGGAAGATGGAGAAATTTGCATCATCTTCTGCTTCAAAGAAGAAACAGGAGAAAGATGATGGGTGGTTTAATTACGATTATGAGAGTTTTGTGGATGTGTCGAAGAGAGTAATGCAGGGAAGATCACGGCCACAGCAGCAGGAAGTTGTCAGGAAAGTTCTCTTGTCTATGCTCCCTCCTGGTGCCCCGGCTCAGTTCAGAAAATTGTTTCCGCCAACAAAATGGGCAGCTGAGTTCAATGCAGCCCTTACAGTGCCGTTCTTCCACTGGCTTGTTGGACCTTCTGAGGTAATTGAAGTGGAAGTAAATGGAGTGAAACAAAGAAGTGGTGTTCTTATAAAGAAGTGCAGGTATTTGGAGAACAGTGGTTGCGTAGGAATGTGTGTGAATATGTGCAAAATCCCAACACAAGACTTCTTCACCAGTGAATTCGGACTTCCTCTGACAATGAATCCAAAATTTGAAGATATGAGCTGCGAAATGGTGTATGGGCAAGTTCCACCACCATTCGAGGAAGATGAAGTCTCCAAACAGGCTTGTTATAAGGATTTATGTTCCATGGCAAATCCAAGTGCAAACCTTTGTCCCAAATTACTATCATAA MVVLNFQPVQFRANIAHCSGQRHENGSRNKRMVIFRPRCRITEPTGVPAPMGQKTKYKDGFFEMIFMNLFARKMEKFASSSASKKKQEKDDGWFNYDYESFVDVSKRVMQGRSRPQQQEVVRKVLLSMLPPGAPAQFRKLFPPTKWAAEFNAALTVPFFHWLVGPSEVIEVEVNGVKQRSGVLIKKCRYLENSGCVGMCVNMCKIPTQDFFTSEFGLPLTMNPKFEDMSCEMVYGQVPPPFEEDEVSKQACYKDLCSMANPSANLCPKLLS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo26016.1 vs. NCBI nr
Match: gi|902237259|gb|KNA24732.1| (hypothetical protein SOVF_013280 [Spinacia oleracea]) HSP 1 Score: 563.5 bits (1451), Expect = 2.000e-157 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
BLAST of Spo26016.1 vs. NCBI nr
Match: gi|731331921|ref|XP_010676912.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 474.9 bits (1221), Expect = 9.100e-131 Identity = 232/273 (84.98%), Postives = 249/273 (91.21%), Query Frame = 1
BLAST of Spo26016.1 vs. NCBI nr
Match: gi|870861173|gb|KMT12481.1| (hypothetical protein BVRB_5g104090 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 451.4 bits (1160), Expect = 1.100e-123 Identity = 216/236 (91.53%), Postives = 226/236 (95.76%), Query Frame = 1
BLAST of Spo26016.1 vs. NCBI nr
Match: gi|470147943|ref|XP_004309536.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X2 [Fragaria vesca subsp. vesca]) HSP 1 Score: 412.9 bits (1060), Expect = 4.300e-112 Identity = 205/271 (75.65%), Postives = 224/271 (82.66%), Query Frame = 1
BLAST of Spo26016.1 vs. NCBI nr
Match: gi|720036651|ref|XP_010267423.1| (PREDICTED: beta-carotene isomerase D27, chloroplastic [Nelumbo nucifera]) HSP 1 Score: 410.6 bits (1054), Expect = 2.100e-111 Identity = 203/269 (75.46%), Postives = 227/269 (84.39%), Query Frame = 1
BLAST of Spo26016.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0U2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_013280 PE=4 SV=1) HSP 1 Score: 563.5 bits (1451), Expect = 1.400e-157 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
BLAST of Spo26016.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F9C8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g104090 PE=4 SV=1) HSP 1 Score: 451.4 bits (1160), Expect = 7.500e-124 Identity = 216/236 (91.53%), Postives = 226/236 (95.76%), Query Frame = 1
BLAST of Spo26016.1 vs. UniProtKB/TrEMBL
Match: A0A059CFS4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01676 PE=4 SV=1) HSP 1 Score: 403.3 bits (1035), Expect = 2.400e-109 Identity = 194/262 (74.05%), Postives = 217/262 (82.82%), Query Frame = 1
BLAST of Spo26016.1 vs. UniProtKB/TrEMBL
Match: F6HU76_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g02640 PE=4 SV=1) HSP 1 Score: 400.6 bits (1028), Expect = 1.500e-108 Identity = 198/269 (73.61%), Postives = 222/269 (82.53%), Query Frame = 1
BLAST of Spo26016.1 vs. UniProtKB/TrEMBL
Match: A0A061GA01_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_015633 PE=4 SV=1) HSP 1 Score: 395.2 bits (1014), Expect = 6.400e-107 Identity = 197/269 (73.23%), Postives = 217/269 (80.67%), Query Frame = 1
BLAST of Spo26016.1 vs. ExPASy Swiss-Prot
Match: D27_ORYSJ (Beta-carotene isomerase D27, chloroplastic OS=Oryza sativa subsp. japonica GN=D27 PE=1 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.400e-38 Identity = 82/202 (40.59%), Postives = 121/202 (59.90%), Query Frame = 1
BLAST of Spo26016.1 vs. ExPASy Swiss-Prot
Match: D27_ARATH (Beta-carotene isomerase D27, chloroplastic OS=Arabidopsis thaliana GN=D27 PE=1 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 9.100e-38 Identity = 81/196 (41.33%), Postives = 113/196 (57.65%), Query Frame = 1
BLAST of Spo26016.1 vs. TAIR (Arabidopsis)
Match: AT1G64680.1 (unknown protein) HSP 1 Score: 387.1 bits (993), Expect = 8.800e-108 Identity = 183/232 (78.88%), Postives = 202/232 (87.07%), Query Frame = 1
BLAST of Spo26016.1 vs. TAIR (Arabidopsis)
Match: AT1G03055.1 (unknown protein) HSP 1 Score: 158.7 bits (400), Expect = 5.100e-39 Identity = 81/196 (41.33%), Postives = 113/196 (57.65%), Query Frame = 1
BLAST of Spo26016.1 vs. TAIR (Arabidopsis)
Match: AT4G01995.1 (unknown protein) HSP 1 Score: 134.4 bits (337), Expect = 1.000e-31 Identity = 83/241 (34.44%), Postives = 128/241 (53.11%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo26016.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo26016.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo26016.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo26016.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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