Spo25921 (gene)

Overview
NameSpo25921
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 40747862 .. 40748632 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCACGTCGTGAGGCTTTTGGGAATGATCGAAGATTGGAGAATAACTAGCGGATCCCCATCCATCCCTCATAATCCACGGGTTAGTAGAGACCAAATCCATGAGTTTAAAATCACAAGGTAAAACGACATCTGTAAACTAAATCAATAACACTTGATAAAGTAATAAAATTAATCAAACTTAACAATACAATATCTATTGTATACAACCCCCGTTCGCGATCGCTAGACCAAAACCTGATCAACGAAGTTAAATTATCTATTGTATACAACCCCCGTTCGCAATCGCTAGACCAAAACCTGATCAACGAAGTTAAATTGTTGCAATTATACAGAACGGGTTAACTTTCCTTATAGTCATGTCAAATTGGCAATGGCAAACATGATCCCATTCCATCCCATACCCATCCATGATCAAGTTTATTATTCCCTCTTAATCTCCAAAAACCCACTCCATCATATCCACTAATCAACACCCACCACCTGTCACCTTTTAGACTTGTCACTCTTTTTTTTTTCCTTTTCATTTTCATTTCTCTCCAATACGTCAAAAGAACACAAATCATAATAACAAATTAACAAGAAAGTGTAGTAGGTTCTGAAAAAGGAAGCGATTTTCGCCATTTTTGGAAGGATTTGTTGCAGACTCAAACTTGATCTTCTGCTCCTCCTTTCACCCTTATATGATCCAACACGACAAACCCAACCCCAACCCAATACACAAACCCACACTCTCTCTTTCTCTCTCCTAATTTTCCCCATTTATTAA

mRNA sequence

ATGTTCCACGTCGTGAGGCTTTTGGGAATGATCGAAGATTGGAGAATAACTAGCGGATCCCCATCCATCCCTCATAATCCACGGGTTCTGAAAAAGGAAGCGATTTTCGCCATTTTTGGAAGGATTTGTTGCAGACTCAAACTTGATCTTCTGCTCCTCCTTTCACCCTTATATGATCCAACACGACAAACCCAACCCCAACCCAATACACAAACCCACACTCTCTCTTTCTCTCTCCTAATTTTCCCCATTTATTAA

Coding sequence (CDS)

ATGTTCCACGTCGTGAGGCTTTTGGGAATGATCGAAGATTGGAGAATAACTAGCGGATCCCCATCCATCCCTCATAATCCACGGGTTCTGAAAAAGGAAGCGATTTTCGCCATTTTTGGAAGGATTTGTTGCAGACTCAAACTTGATCTTCTGCTCCTCCTTTCACCCTTATATGATCCAACACGACAAACCCAACCCCAACCCAATACACAAACCCACACTCTCTCTTTCTCTCTCCTAATTTTCCCCATTTATTAA

Protein sequence

MFHVVRLLGMIEDWRITSGSPSIPHNPRVLKKEAIFAIFGRICCRLKLDLLLLLSPLYDPTRQTQPQPNTQTHTLSFSLLIFPIY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25921.1Spo25921.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo25921.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25921.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25921.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo25921.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006807 nitrogen compound metabolic process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005829 cytosol
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
molecular_function GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
molecular_function GO:0016746 transferase activity, transferring acyl groups
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003690 double-stranded DNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo194460.67Barchart | Table
Spo114800.66Barchart | Table
Spo188620.66Barchart | Table