Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATATCGACCAAGCAAAATATTTATTTAATTAAATCTCTCTTTTTCTTTACTACTCCATAGGAAATATCAAAAATTAATTCATAACCACCCAAAAAATATAAAACTTGTACCACACCTACAGCCATAAATCATTGATCACAGAGAATAACAGCTAAATGCATCACAACAATGATACACACCCACTTCATCAGACGGTCAAGATTACACTAGGGTTTTCAATTTCCTATTTTCTTTTAATTTAAATTTTGTAATTCAATATTGTGCCACAATAATATTCTTTGATTCTGCTATTTCCTCCCACAACATTTTTCATTTCTCTCCACCGAACCCTCACTTCTCTCTCTACTTTCTCTCTCTACTTTCTCTCTCCTCAAAACTTCAACGACCAAAAAATGGTGAAGGGTCCCGGACTTTACTCCGACATCGGCAAAAGAGCCAGAGGTTGATTTCTTGTTTTTACCATGTTTTCTGTTGTCGCATTTCAATGTTATTGTTCTTGATTTTTTGGGTATAATTAATTGGTTGGTTTTGTGTTTTTATTTGATGGGTTTTTGTCGTTGTTATTGTAGATCTTCTGTACAGGGATTATCAGAGTGACCACAAGTTCACCCTTACCACATACACCGCCAATGGAGTGGTAAGTTTTCGCCATTTCTCTCTCCTTACACTTACTTTCTAGGTATTTTGTGTGGGGAAATGATTGGGTTTATGATTGACAAAATCACATAGTTTTGAGTTCGATGATTTATGGGTTTCTTAGGGTTTGTTCAAATGATGTTTATGGGTTTTTAATCATTCATTACTTCTTGCAAAATCTTGATTTGTGCAAAATGTTGGATATTTAGGGTTTAGTTTAAGAATATTACTGGAATTTTGGATGTTTTTGTTGTTTACGCTTGTGAAATGATGGAGAAGTTTTGAGTGGTCAAATAAGGGCTCTATAAGATTATAAGAAGGTGAATTGTGTTTGAGTATAGTTTGTGTGAGTCGTTGACTTCTTTGTATATTGCTATGGAGATTAGACTCGTTTTGCTTCGGTTCTTGTCCTGCACTTGTTATAAAAGGGAAGGTTTTGTGTTCCTGGGTTGTGATTCTCATTAATGGGGATTGTTGAATGTAGTGTGAACTGGACAACTCCTCTTTCATTTGCCAGCATCAGCATTACGAATTAGAATCTGCGTGCTTCATGTATTCCGCGGGTTTAATTGAGATAACAATGTAATTTGATTAGGAATTGCATTGTGTCCTGAAGATTTAGGGTTGTGAATCACGATTAAAGAAATTAAGTTAAGCTGTATGTTTGCATTAAAGGTTGTTGTTGACTTCTTAGTTTATATGTAAGAATAAGTCAATCAGACATGTATGGCATGATTAATTTTCTCAAGTAGTCAAGTTAATGTAAACTTGTTTTCTTGCAGGCTATCACTTCTACTGGGACAAAGAAGGGCGAGTTGTTTTTGGCTGATGTCAGCACTAAGTTGACAAACAAGAATATTACCACCGATGTGAAAGTTGATACCAACTCCAATGTGAGTTTGTTTATTTGTATTACTACGAATTGATTCTATGATACATTATGGTTTCATTGGTTTATAGGTTGTATAATTGGTAATTGTGTAAAATTTGGTGAGAGATAGCATTGCTTTCTAATTTCTATGAACATCTTGTTTTTAAATAATTGGAATCTATTGTAATCTGATTCCAACTTCTTTGCTGTCTCTGTCTTCCGCTCTTAGCTTTTCACCACCATTACGGTTGATGAACCTGCCCCTGGCTTGAAGGCTATTTTTAGTTTCCGTGTTCCTGATCAGAGATCTGGCAAGGTACCATACACTTATCTTTCTAGTATTTTCTTACCTAAAGAAGCATGGTTGTGGAGTGTGGACCTTAACTTTTTTGGTTCAAGATACGGGATAATGGTTCTAATTTGTGGAGTATAAATTATGTTAACAGGTTGAGCTTCAGTATTTGCATGAGTATGCTGGCATCAGCACAAGCCTTGGTTTGACAGCAAACCCCATTGTCAACTTTTCTGGTGTTTTTGGAAACAGTACTCTTGCTTTGGGTACTGACCTCTCATTTGACACTGCTTCTGGAAACTTCACCAAATGCAATGCTGGACTGAGCTTTACTAATGATGATCTCATTGCATCTGTGAATGTGTAAGTAGCTTTTGTTATGCTAATCAGCAGATTATCGCTTTGGTATATCCATGTGCAACATTTTATTGTTGTTCAGAAATTAAAGAAAGAGAATCACTCCTATTCTGATTTAACAATTTTCATATTGGTAATTCATATTATCTCTATATGCCTGTATCCTAGAAATAATTTTGGATTCTGCTTGTCGAAAACTACTTAATAATGTTCTAATCTTTCATCTGGATAGATCATTTGATTTTGAAAGCTGGATAGTGGATATACTTTATGGATACACTTGTGATTTTGTTTACTTTTGGGGGTACTGCAGGAACGACAAACTGGACATCTTGAATGCTTCATACTATCATATTGTGAGTCCACTGACCAACACAGCTGTTGGCGCGGAGTTGAGCCACAGCTTCTCGAGTAATGAAAATACACTCAACATTGGTACCCAACATGCATTGGACCCATTGACTTCAGTCAAGGCTCGTGTTAACAACTATGGGAAAGCTAGTGCTCTTATCCAGCACGAATGGCGCCCAAAGTCAATTGTGACTATTTCTGGTGAGGTGGACACAAGTGCGATTGAAAAGAGTGCTAAACTTGGATTGGCCTTGGTTTTGAAGCCTTGAAAGTTCCTCGAGATGATCTTAATGGGTTTCTGTATGGGAAAATAAGTAGGCAAATACTTTTTAGTGGAACTTTTTGTTTGGAATGTATTGGGTTTGTTGACTTGCGTCATTTTGGTGGTCAATTGTAAAAAATAATTCTAGCTGGTGGCGAACCAGTTACCTTTTGTTTCCTGCCCTTGGTCTATGGATTCTTTAATGTCGACTGTTTCACTTGATAAAGTGTTACTTTTTTCCGGAAGTATTTTACAGTCACTTGTCCCCTGTTTTTAAATTTCCATCCCATTTCTCACTTCATATGCTCATTACTCGTACTCCATATTGCAATCCCCTGTTTTTAATTTCCACTTCATATGCTCATTACTCGTAC AATATCGACCAAGCAAAATATTTATTTAATTAAATCTCTCTTTTTCTTTACTACTCCATAGGAAATATCAAAAATTAATTCATAACCACCCAAAAAATATAAAACTTGTACCACACCTACAGCCATAAATCATTGATCACAGAGAATAACAGCTAAATGCATCACAACAATGATACACACCCACTTCATCAGACGGTCAAGATTACACTAGGGTTTTCAATTTCCTATTTTCTTTTAATTTAAATTTTGTAATTCAATATTGTGCCACAATAATATTCTTTGATTCTGCTATTTCCTCCCACAACATTTTTCATTTCTCTCCACCGAACCCTCACTTCTCTCTCTACTTTCTCTCTCTACTTTCTCTCTCCTCAAAACTTCAACGACCAAAAAATGGTGAAGGGTCCCGGACTTTACTCCGACATCGGCAAAAGAGCCAGAGATCTTCTGTACAGGGATTATCAGAGTGACCACAAGTTCACCCTTACCACATACACCGCCAATGGAGTGGCTATCACTTCTACTGGGACAAAGAAGGGCGAGTTGTTTTTGGCTGATGTCAGCACTAAGTTGACAAACAAGAATATTACCACCGATGTGAAAGTTGATACCAACTCCAATCTTTTCACCACCATTACGGTTGATGAACCTGCCCCTGGCTTGAAGGCTATTTTTAGTTTCCGTGTTCCTGATCAGAGATCTGGCAAGGTTGAGCTTCAGTATTTGCATGAGTATGCTGGCATCAGCACAAGCCTTGGTTTGACAGCAAACCCCATTGTCAACTTTTCTGGTGTTTTTGGAAACAGTACTCTTGCTTTGGGTACTGACCTCTCATTTGACACTGCTTCTGGAAACTTCACCAAATGCAATGCTGGACTGAGCTTTACTAATGATGATCTCATTGCATCTGTGAATGTGAACGACAAACTGGACATCTTGAATGCTTCATACTATCATATTGTGAGTCCACTGACCAACACAGCTGTTGGCGCGGAGTTGAGCCACAGCTTCTCGAGTAATGAAAATACACTCAACATTGGTACCCAACATGCATTGGACCCATTGACTTCAGTCAAGGCTCGTGTTAACAACTATGGGAAAGCTAGTGCTCTTATCCAGCACGAATGGCGCCCAAAGTCAATTGTGACTATTTCTGGTGAGGTGGACACAAGTGCGATTGAAAAGAGTGCTAAACTTGGATTGGCCTTGGTTTTGAAGCCTTGAAAGTTCCTCGAGATGATCTTAATGGGTTTCTGTATGGGAAAATAAGTAGGCAAATACTTTTTAGTGGAACTTTTTGTTTGGAATGTATTGGGTTTGTTGACTTGCGTCATTTTGGTGGTCAATTGTAAAAAATAATTCTAGCTGGTGGCGAACCAGTTACCTTTTGTTTCCTGCCCTTGGTCTATGGATTCTTTAATGTCGACTGTTTCACTTGATAAAGTGTTACTTTTTTCCGGAAGTATTTTACAGTCACTTGTCCCCTGTTTTTAAATTTCCATCCCATTTCTCACTTCATATGCTCATTACTCGTACTCCATATTGCAATCCCCTGTTTTTAATTTCCACTTCATATGCTCATTACTCGTAC ATGGTGAAGGGTCCCGGACTTTACTCCGACATCGGCAAAAGAGCCAGAGATCTTCTGTACAGGGATTATCAGAGTGACCACAAGTTCACCCTTACCACATACACCGCCAATGGAGTGGCTATCACTTCTACTGGGACAAAGAAGGGCGAGTTGTTTTTGGCTGATGTCAGCACTAAGTTGACAAACAAGAATATTACCACCGATGTGAAAGTTGATACCAACTCCAATCTTTTCACCACCATTACGGTTGATGAACCTGCCCCTGGCTTGAAGGCTATTTTTAGTTTCCGTGTTCCTGATCAGAGATCTGGCAAGGTTGAGCTTCAGTATTTGCATGAGTATGCTGGCATCAGCACAAGCCTTGGTTTGACAGCAAACCCCATTGTCAACTTTTCTGGTGTTTTTGGAAACAGTACTCTTGCTTTGGGTACTGACCTCTCATTTGACACTGCTTCTGGAAACTTCACCAAATGCAATGCTGGACTGAGCTTTACTAATGATGATCTCATTGCATCTGTGAATGTGAACGACAAACTGGACATCTTGAATGCTTCATACTATCATATTGTGAGTCCACTGACCAACACAGCTGTTGGCGCGGAGTTGAGCCACAGCTTCTCGAGTAATGAAAATACACTCAACATTGGTACCCAACATGCATTGGACCCATTGACTTCAGTCAAGGCTCGTGTTAACAACTATGGGAAAGCTAGTGCTCTTATCCAGCACGAATGGCGCCCAAAGTCAATTGTGACTATTTCTGGTGAGGTGGACACAAGTGCGATTGAAAAGAGTGCTAAACTTGGATTGGCCTTGGTTTTGAAGCCTTGA MVKGPGLYSDIGKRARDLLYRDYQSDHKFTLTTYTANGVAITSTGTKKGELFLADVSTKLTNKNITTDVKVDTNSNLFTTITVDEPAPGLKAIFSFRVPDQRSGKVELQYLHEYAGISTSLGLTANPIVNFSGVFGNSTLALGTDLSFDTASGNFTKCNAGLSFTNDDLIASVNVNDKLDILNASYYHIVSPLTNTAVGAELSHSFSSNENTLNIGTQHALDPLTSVKARVNNYGKASALIQHEWRPKSIVTISGEVDTSAIEKSAKLGLALVLKP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25733.1 vs. NCBI nr
Match: gi|1256259|gb|AAA96275.1| (voltage-dependent anion channel protein [Spinacia oleracea]) HSP 1 Score: 536.2 bits (1380), Expect = 3.400e-149 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1
BLAST of Spo25733.1 vs. NCBI nr
Match: gi|731344143|ref|XP_010683253.1| (PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 520.0 bits (1338), Expect = 2.500e-144 Identity = 267/276 (96.74%), Postives = 271/276 (98.19%), Query Frame = 1
BLAST of Spo25733.1 vs. NCBI nr
Match: gi|567892199|ref|XP_006438620.1| (hypothetical protein CICLE_v10032366mg [Citrus clementina]) HSP 1 Score: 474.6 bits (1220), Expect = 1.200e-130 Identity = 239/276 (86.59%), Postives = 260/276 (94.20%), Query Frame = 1
BLAST of Spo25733.1 vs. NCBI nr
Match: gi|568859403|ref|XP_006483230.1| (PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Citrus sinensis]) HSP 1 Score: 473.8 bits (1218), Expect = 2.100e-130 Identity = 239/276 (86.59%), Postives = 260/276 (94.20%), Query Frame = 1
BLAST of Spo25733.1 vs. NCBI nr
Match: gi|702421950|ref|XP_010066951.1| (PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Eucalyptus grandis]) HSP 1 Score: 469.9 bits (1208), Expect = 3.000e-129 Identity = 237/276 (85.87%), Postives = 254/276 (92.03%), Query Frame = 1
BLAST of Spo25733.1 vs. UniProtKB/TrEMBL
Match: Q41368_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SVDAC1 PE=2 SV=1) HSP 1 Score: 536.2 bits (1380), Expect = 2.400e-149 Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1
BLAST of Spo25733.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4I7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g154570 PE=4 SV=1) HSP 1 Score: 520.0 bits (1338), Expect = 1.800e-144 Identity = 267/276 (96.74%), Postives = 271/276 (98.19%), Query Frame = 1
BLAST of Spo25733.1 vs. UniProtKB/TrEMBL
Match: V4TJR4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032366mg PE=4 SV=1) HSP 1 Score: 474.6 bits (1220), Expect = 8.500e-131 Identity = 239/276 (86.59%), Postives = 260/276 (94.20%), Query Frame = 1
BLAST of Spo25733.1 vs. UniProtKB/TrEMBL
Match: A0A059BGL5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02544 PE=4 SV=1) HSP 1 Score: 469.9 bits (1208), Expect = 2.100e-129 Identity = 237/276 (85.87%), Postives = 254/276 (92.03%), Query Frame = 1
BLAST of Spo25733.1 vs. UniProtKB/TrEMBL
Match: F6HPF2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01650 PE=4 SV=1) HSP 1 Score: 465.3 bits (1196), Expect = 5.100e-128 Identity = 234/276 (84.78%), Postives = 254/276 (92.03%), Query Frame = 1
BLAST of Spo25733.1 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2) HSP 1 Score: 457.2 bits (1175), Expect = 1.300e-127 Identity = 228/276 (82.61%), Postives = 257/276 (93.12%), Query Frame = 1
BLAST of Spo25733.1 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2) HSP 1 Score: 434.5 bits (1116), Expect = 8.700e-121 Identity = 209/276 (75.72%), Postives = 250/276 (90.58%), Query Frame = 1
BLAST of Spo25733.1 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2) HSP 1 Score: 410.6 bits (1054), Expect = 1.300e-113 Identity = 201/276 (72.83%), Postives = 238/276 (86.23%), Query Frame = 1
BLAST of Spo25733.1 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=VDAC1 PE=1 SV=3) HSP 1 Score: 401.4 bits (1030), Expect = 8.200e-111 Identity = 201/276 (72.83%), Postives = 238/276 (86.23%), Query Frame = 1
BLAST of Spo25733.1 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3) HSP 1 Score: 382.5 bits (981), Expect = 3.900e-105 Identity = 190/273 (69.60%), Postives = 230/273 (84.25%), Query Frame = 1
BLAST of Spo25733.1 vs. TAIR (Arabidopsis)
Match: AT3G01280.1 (voltage dependent anion channel 1) HSP 1 Score: 401.4 bits (1030), Expect = 4.600e-112 Identity = 201/276 (72.83%), Postives = 238/276 (86.23%), Query Frame = 1
BLAST of Spo25733.1 vs. TAIR (Arabidopsis)
Match: AT5G15090.1 (voltage dependent anion channel 3) HSP 1 Score: 373.2 bits (957), Expect = 1.300e-103 Identity = 184/276 (66.67%), Postives = 228/276 (82.61%), Query Frame = 1
BLAST of Spo25733.1 vs. TAIR (Arabidopsis)
Match: AT5G67500.2 (voltage dependent anion channel 2) HSP 1 Score: 252.7 bits (644), Expect = 2.600e-67 Identity = 132/303 (43.56%), Postives = 189/303 (62.38%), Query Frame = 1
BLAST of Spo25733.1 vs. TAIR (Arabidopsis)
Match: AT5G57490.1 (voltage dependent anion channel 4) HSP 1 Score: 246.9 bits (629), Expect = 1.500e-65 Identity = 121/276 (43.84%), Postives = 181/276 (65.58%), Query Frame = 1
BLAST of Spo25733.1 vs. TAIR (Arabidopsis)
Match: AT3G49920.1 (voltage dependent anion channel 5) HSP 1 Score: 113.2 bits (282), Expect = 2.500e-25 Identity = 77/232 (33.19%), Postives = 120/232 (51.72%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25733.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25733.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25733.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25733.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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