Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCACTGACATCCCTACACCCGGATCACATCGTACAAGAAGGGGGTGGTATGTGAGTTGTGAACAAGCAAGCAAAACAAAGCCCACATCCTAACATTGCCCATTCTACAAGAGGGGATGAAATGATGAAACGTGAGTTGTGATTGTAAGCAGCAAAGCAAAGCAAAGCAAAGCCCATATGCCATATCCTAGCACAGCCCATCCTACAAAACCTCCCAAAAATAATTCCTCCTCATCTTTACCAATTACACCAACACCATTGTTTGTTTGGTGAGAGAGAGAGAATGGAAGCAATGAGTGGATTGAGCAGCCCTTGCAATTGCATTTCATCACTACCTCACTCCTCCTCCACCACCACCCGCCACCAGAACCTCCTCTTCCGCCGCAACAACCACCACCAGCAAAAATTAGCTGCATTTCACTCACAATCCCATCTTTTTTCCACAAAATGCCCTCTCATCTCTCACTCACTCCCTCGAAAAAAATCCTTCAAACCCCACATCTTCCTTCCCCACTTGGTCGCTTCCATGGTTTGTTTCTCTTTAACATTTATCTTTTTCAATAAAAAAGCAAAAAACTTTCTTGATTTTTACTTTTTTTTTTGCAGGAGCAAGTTGAGGAGACTTACATTATGATTAAACCAGATGGGGTTCAACGTGGCCTTGTATGTTTGTAATTTGATTGAATGAACTTATATTCGCGATGGATTTTGTTTTATAATCAAAAGAAAAATAATGGGTTTTATTGGGTTGAAGATTTGGTGAAATGGTTTGTTAATGGAATTCAATTTTTCAGGTTGGAGAGATAATTTCCAGATTTGAGAAGAAGGGTTTTAAATTGATTGGATTGAAGATGTATCCATGCCCTAAAGAATTAGCTGAGGTATAATTCCAACTTATTCAATTCTGTATTAACCTTCAAAAAAAAAATCATTATTAGAATTTGCTTGCTTCATTTATGAAATGAGGACATTATTTGCTTAGCTTAGAACTTTAGGTGTTCTTTCTGGAATAAATTTGATGATTTTGTTACGGTTATGCCTAATTTATGAGAATTGGTTGCTTATTTGTGAGCTTAAGAAAAACCAAGGTTTTGTTGTGGTAAGTTAAACACATTTTTCTGGTATAAAATGATAAAATGTTCCTCCAAATTTTTGTAATAATTTGGTTGTTTAGGCGGTATGTAGCTTAGGCTCGAACACGAAGAAATGTGTGTAGGGAAGGGGGGAAATGAGAAAACAGGATGTTATCAAATAGGAGTAATTGGATTCAAGGATTGTAAGCCACTTAAGTAATAAACCCTTGGCATTGCGATTTTGCGAAGATGATGACTGGAGAACACGTAAAGCATGTCTTTTTATATGGTAATTGTGGTGATTTCTGGTGTATGTGGGTTCTTATTGAGGAAAAATATAACAGGAGCACTACAAGGATCTCAAGGCCAAGTCATTTTATCAGAAGTTGATCGAATACCTAACTTCTGGTCCTGTTGTGTGTATGGTATGATTTATTTATTAACCTTTCTCATCCTCCTTAAATGCAATGTTGGAGTGAATATAAGTAGTGATAATTGATGAATACTAGGCTTGGGAGGGTGTTGGAGTTGTTGCTTCATCACGTAAGCTAATAGGAGCCACCGATCCTCTTCAAGCTGAACCTGGAACTATTAGAGGGGATCTTGCTGTTCAAACGGGGAGGTTGGTCTCTTAGCCTTTCAACTAAATTTCCATGATGTCTAAAGTTGTAAAGTCATGCTGCGGTCTCAGAGATTGTTAGCTATGTACTATTCTGAATTCCACTTAATACTTGCAGGAATGTGGTTCATGGAAGTGATAGCCCTGACAATGGCAAGCGTGAAATAGGTTAGAACTTCTATTCTTCATTTATACTCGGTATTTTGTGTGAATTAATTTCATGGCCATAACGTTTGGTAATGGGTATAAGTTAGCTGATTAGGTGATTTTGTGGCTAGTCAAATGCGAAATATATCTGATGTATCTGTTTTTGTTAATCAGCGAACCTCTTACTATGTGGTGTACTTCCATTTTGTGGTATGTTGCAAACTGGGCAAGTATAAGATGTCATCTGAAATCTAATGAATGGATAGTGAAGTACTAGAAGCTCAATTTCTAGTTTATTAATTCAAATATTAGAGATCAGAAAACCAGTAACTTCTGCTTAAATCAATTAATTTCTGAGAAAAGGTTCAGCAAACTTGGTGGCAATGGCCTCTCCCCTAGTCAATTATTGGTTATGGGGCTTTGCATCTGCATACATCTTGACCTCCGAAGTTTTTAGTAATGGGATTGATATGAGGGTACATTATTTAGTTAATAAAAAGTAGAGACTGGGAATATTTCTTGGCAGGGAAACCATACAATCCCTTTAACTCACTGCTGCGACTGCTGATGAGTTGTTTGAAAATTGCTTGTACTATGAAGTGCAACTCTGTCTACTGATCTGCTAACTGCTTTCTCTAATTCTTCTCCGATTGTATATTCACTTGCAGGTCTGTGGTTTAAAGAAGGTGAAATATGCCAATGGACACCTGCCCAGGCACCATGGCTAAGAGAGTGATCTTGTGACCCGTTATTTTGTGAATCTACTGATAGAGTGTTGCACAGCTTTGAGGCTTTATTTGTTCTGGCTTGGGACATGCATTTTTCCGTGTGCTTCAAATGTACTTATTCTGTAGCAAAAATTTCTGTAGGATGTGTATTTATCTACATTCACAATCACAAGTTTTTGAATCAATTACAAGTTGCTGCTGAAATAAAATTGCTGGTGATTAAAGATTATGATTTATTGTAACAGTACATTTTTTTTGAATACCCCGTATTATATTTAACAATACATTGTGAAGTGGGATAGAACTCATCTGATATTGGAGAACAGAACTCTGATTTCCAATCAGGCAATAGAAAGGACAGTATTAACACTGAACATTACAAGAAGACTGAACATCATCCCTATTGTTGCATCCATTTTACACACCATCATAAGTTAATCAGCAAAACAAAATGCTACCACCTTCTCGGACATTTGGTGTCGACTGTTTCACAGAATTCTGAGTATTCTGCTCATGATCAAAGCTAAAGTCTTGAGCAACCTGACGATTCAGACTCACTCGAACAGGCAGACATATTTACTGAAGAACCACCATTGTAACTAGTCGAGCTTTCCTTTTTATTTGAAGTAGTATACTTGGAAAACAAATAACGTATTGAGATTTCTCTGCCTATCTTTTGTTCCTGATCAGGACTTGAAGAAACACCAGAACAAGAACTGTCAGTACTGCAAGC CCACTGACATCCCTACACCCGGATCACATCGTACAAGAAGGGGGTGGTATGTGAGTTGTGAACAAGCAAGCAAAACAAAGCCCACATCCTAACATTGCCCATTCTACAAGAGGGGATGAAATGATGAAACGTGAGTTGTGATTGTAAGCAGCAAAGCAAAGCAAAGCAAAGCCCATATGCCATATCCTAGCACAGCCCATCCTACAAAACCTCCCAAAAATAATTCCTCCTCATCTTTACCAATTACACCAACACCATTGTTTGTTTGGTGAGAGAGAGAGAATGGAAGCAATGAGTGGATTGAGCAGCCCTTGCAATTGCATTTCATCACTACCTCACTCCTCCTCCACCACCACCCGCCACCAGAACCTCCTCTTCCGCCGCAACAACCACCACCAGCAAAAATTAGCTGCATTTCACTCACAATCCCATCTTTTTTCCACAAAATGCCCTCTCATCTCTCACTCACTCCCTCGAAAAAAATCCTTCAAACCCCACATCTTCCTTCCCCACTTGGTCGCTTCCATGGAGCAAGTTGAGGAGACTTACATTATGATTAAACCAGATGGGGTTCAACGTGGCCTTGTTGGAGAGATAATTTCCAGATTTGAGAAGAAGGGTTTTAAATTGATTGGATTGAAGATGTATCCATGCCCTAAAGAATTAGCTGAGGAGCACTACAAGGATCTCAAGGCCAAGTCATTTTATCAGAAGTTGATCGAATACCTAACTTCTGGTCCTGTTGTGTGTATGGCTTGGGAGGGTGTTGGAGTTGTTGCTTCATCACGTAAGCTAATAGGAGCCACCGATCCTCTTCAAGCTGAACCTGGAACTATTAGAGGGGATCTTGCTGTTCAAACGGGGAGGAATGTGGTTCATGGAAGTGATAGCCCTGACAATGGCAAGCGTGAAATAGGTCTGTGGTTTAAAGAAGGTGAAATATGCCAATGGACACCTGCCCAGGCACCATGGCTAAGAGAGTGATCTTGTGACCCGTTATTTTGTGAATCTACTGATAGAGTGTTGCACAGCTTTGAGGCTTTATTTGTTCTGGCTTGGGACATGCATTTTTCCGTGTGCTTCAAATGTACTTATTCTGTAGCAAAAATTTCTGTAGGATGTGTATTTATCTACATTCACAATCACAAGTTTTTGAATCAATTACAAGTTGCTGCTGAAATAAAATTGCTGGTGATTAAAGATTATGATTTATTGTAACAGTACATTTTTTTTGAATACCCCGTATTATATTTAACAATACATTGTGAAGTGGGATAGAACTCATCTGATATTGGAGAACAGAACTCTGATTTCCAATCAGGCAATAGAAAGGACAGTATTAACACTGAACATTACAAGAAGACTGAACATCATCCCTATTGTTGCATCCATTTTACACACCATCATAAGTTAATCAGCAAAACAAAATGCTACCACCTTCTCGGACATTTGGTGTCGACTGTTTCACAGAATTCTGAGTATTCTGCTCATGATCAAAGCTAAAGTCTTGAGCAACCTGACGATTCAGACTCACTCGAACAGGCAGACATATTTACTGAAGAACCACCATTGTAACTAGTCGAGCTTTCCTTTTTATTTGAAGTAGTATACTTGGAAAACAAATAACGTATTGAGATTTCTCTGCCTATCTTTTGTTCCTGATCAGGACTTGAAGAAACACCAGAACAAGAACTGTCAGTACTGCAAGC ATGGAAGCAATGAGTGGATTGAGCAGCCCTTGCAATTGCATTTCATCACTACCTCACTCCTCCTCCACCACCACCCGCCACCAGAACCTCCTCTTCCGCCGCAACAACCACCACCAGCAAAAATTAGCTGCATTTCACTCACAATCCCATCTTTTTTCCACAAAATGCCCTCTCATCTCTCACTCACTCCCTCGAAAAAAATCCTTCAAACCCCACATCTTCCTTCCCCACTTGGTCGCTTCCATGGAGCAAGTTGAGGAGACTTACATTATGATTAAACCAGATGGGGTTCAACGTGGCCTTGTTGGAGAGATAATTTCCAGATTTGAGAAGAAGGGTTTTAAATTGATTGGATTGAAGATGTATCCATGCCCTAAAGAATTAGCTGAGGAGCACTACAAGGATCTCAAGGCCAAGTCATTTTATCAGAAGTTGATCGAATACCTAACTTCTGGTCCTGTTGTGTGTATGGCTTGGGAGGGTGTTGGAGTTGTTGCTTCATCACGTAAGCTAATAGGAGCCACCGATCCTCTTCAAGCTGAACCTGGAACTATTAGAGGGGATCTTGCTGTTCAAACGGGGAGGAATGTGGTTCATGGAAGTGATAGCCCTGACAATGGCAAGCGTGAAATAGGTCTGTGGTTTAAAGAAGGTGAAATATGCCAATGGACACCTGCCCAGGCACCATGGCTAAGAGAGTGA MEAMSGLSSPCNCISSLPHSSSTTTRHQNLLFRRNNHHQQKLAAFHSQSHLFSTKCPLISHSLPRKKSFKPHIFLPHLVASMEQVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIEYLTSGPVVCMAWEGVGVVASSRKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIGLWFKEGEICQWTPAQAPWLRE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25655.1 vs. NCBI nr
Match: gi|902180075|gb|KNA09467.1| (hypothetical protein SOVF_153170 [Spinacia oleracea]) HSP 1 Score: 479.9 bits (1234), Expect = 2.400e-132 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1
BLAST of Spo25655.1 vs. NCBI nr
Match: gi|266607|sp|Q01402.1|NDK2_SPIOL (RecName: Full=Nucleoside diphosphate kinase 2, chloroplastic; AltName: Full=Nucleoside diphosphate kinase II; Short=NDK II; Short=NDP kinase II; Short=NDPK II; Contains: RecName: Full=Nucleoside diphosphate kinase 2 high molecular weight; Contains: RecName: Full=Nucleoside diphosphate kinase 2 low molecular weight; Flags: Precursor) HSP 1 Score: 478.0 bits (1229), Expect = 9.300e-132 Identity = 231/233 (99.14%), Postives = 233/233 (100.00%), Query Frame = 1
BLAST of Spo25655.1 vs. NCBI nr
Match: gi|731368492|ref|XP_010696176.1| (PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 381.3 bits (978), Expect = 1.200e-102 Identity = 192/235 (81.70%), Postives = 206/235 (87.66%), Query Frame = 1
BLAST of Spo25655.1 vs. NCBI nr
Match: gi|743894321|ref|XP_011040410.1| (PREDICTED: nucleoside diphosphate kinase 2, chloroplastic-like [Populus euphratica]) HSP 1 Score: 335.5 bits (859), Expect = 7.400e-89 Identity = 172/239 (71.97%), Postives = 195/239 (81.59%), Query Frame = 1
BLAST of Spo25655.1 vs. NCBI nr
Match: gi|566197644|ref|XP_002318702.2| (hypothetical protein POPTR_0012s09540g [Populus trichocarpa]) HSP 1 Score: 335.5 bits (859), Expect = 7.400e-89 Identity = 173/239 (72.38%), Postives = 195/239 (81.59%), Query Frame = 1
BLAST of Spo25655.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQC8_SPIOL (Nucleoside diphosphate kinase OS=Spinacia oleracea GN=SOVF_153170 PE=3 SV=1) HSP 1 Score: 479.9 bits (1234), Expect = 1.700e-132 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1
BLAST of Spo25655.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAY9_BETVU (Nucleoside diphosphate kinase OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g178310 PE=3 SV=1) HSP 1 Score: 381.3 bits (978), Expect = 8.200e-103 Identity = 192/235 (81.70%), Postives = 206/235 (87.66%), Query Frame = 1
BLAST of Spo25655.1 vs. UniProtKB/TrEMBL
Match: B9I3M0_POPTR (Nucleoside diphosphate kinase OS=Populus trichocarpa GN=POPTR_0012s09540g PE=3 SV=2) HSP 1 Score: 335.5 bits (859), Expect = 5.200e-89 Identity = 173/239 (72.38%), Postives = 195/239 (81.59%), Query Frame = 1
BLAST of Spo25655.1 vs. UniProtKB/TrEMBL
Match: A0A151TE39_CAJCA (Nucleoside diphosphate kinase OS=Cajanus cajan GN=KK1_011554 PE=3 SV=1) HSP 1 Score: 333.2 bits (853), Expect = 2.600e-88 Identity = 170/233 (72.96%), Postives = 192/233 (82.40%), Query Frame = 1
BLAST of Spo25655.1 vs. UniProtKB/TrEMBL
Match: A0A0S3R5V8_PHAAN (Nucleoside diphosphate kinase OS=Vigna angularis var. angularis GN=Vigan.01G394000 PE=3 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 4.900e-87 Identity = 165/221 (74.66%), Postives = 184/221 (83.26%), Query Frame = 1
BLAST of Spo25655.1 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1) HSP 1 Score: 478.0 bits (1229), Expect = 5.800e-134 Identity = 231/233 (99.14%), Postives = 233/233 (100.00%), Query Frame = 1
BLAST of Spo25655.1 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1) HSP 1 Score: 307.4 bits (786), Expect = 1.400e-82 Identity = 160/230 (69.57%), Postives = 180/230 (78.26%), Query Frame = 1
BLAST of Spo25655.1 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2) HSP 1 Score: 306.6 bits (784), Expect = 2.300e-82 Identity = 157/221 (71.04%), Postives = 173/221 (78.28%), Query Frame = 1
BLAST of Spo25655.1 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 1.400e-79 Identity = 153/236 (64.83%), Postives = 182/236 (77.12%), Query Frame = 1
BLAST of Spo25655.1 vs. ExPASy Swiss-Prot
Match: NDK_SYNPW (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH7803) GN=ndk PE=3 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 2.100e-51 Identity = 91/148 (61.49%), Postives = 115/148 (77.70%), Query Frame = 1
BLAST of Spo25655.1 vs. TAIR (Arabidopsis)
Match: AT5G63310.1 (nucleoside diphosphate kinase 2) HSP 1 Score: 306.6 bits (784), Expect = 1.300e-83 Identity = 157/221 (71.04%), Postives = 173/221 (78.28%), Query Frame = 1
BLAST of Spo25655.1 vs. TAIR (Arabidopsis)
Match: AT4G09320.1 (Nucleoside diphosphate kinase family protein) HSP 1 Score: 193.0 bits (489), Expect = 2.100e-49 Identity = 86/159 (54.09%), Postives = 118/159 (74.21%), Query Frame = 1
BLAST of Spo25655.1 vs. TAIR (Arabidopsis)
Match: AT4G11010.1 (nucleoside diphosphate kinase 3) HSP 1 Score: 192.6 bits (488), Expect = 2.700e-49 Identity = 86/148 (58.11%), Postives = 111/148 (75.00%), Query Frame = 1
BLAST of Spo25655.1 vs. TAIR (Arabidopsis)
Match: AT4G23900.1 (Nucleoside diphosphate kinase family protein) HSP 1 Score: 187.2 bits (474), Expect = 1.200e-47 Identity = 84/148 (56.76%), Postives = 109/148 (73.65%), Query Frame = 1
BLAST of Spo25655.1 vs. TAIR (Arabidopsis)
Match: AT1G17410.1 (Nucleoside diphosphate kinase family protein) HSP 1 Score: 89.7 bits (221), Expect = 2.500e-18 Identity = 51/135 (37.78%), Postives = 74/135 (54.81%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25655.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25655.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25655.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25655.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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