Spo25503 (gene) | SpinachBase

Overview


Name	Spo25503
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Thylakoid lumenal 19 kDa protein
Location	SpoScf_03087 : 2597 .. 3364 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCCACCCTATTATCAACATCATCACTTGTATCTACTTCCACATCCAGCTCTACAAAAGCACCCCATACTCAAACTTTATCCAAGCCCCAACAAGTTTGCTGCATAGTATCAAAACCAGCACCTCTAACTAATAACTTCAGCTTAACCAGTGCCATTGCTGCTGCCGCGGCTGCAGTTGTGATCCTATCAACGAGCTCCTCTCCATCACTAGCAGACTCCCCAACCCCAAACACATACAATATATACTACGGGACAGCAGCAAGCGCGGCCAACTATGGAGGGTATGGTGGGAATTCAAACAAGAAAGATTCAGCTGAGTACATATATGAAGTGCCCTCTGGTTGGAAAGAGAGGCAAGTGTCGAAAATTGAGAAGGGTACGAATGGAACAGACAGCGAGTTCTATAACCCAAAAAAGAAGACAGAAAGAGAGTATTTGACATTCTTATCTGGGTTTAGGCAACTTGATCCGATTCCAAAAGATGTAGTGCTTAATAACTTAGCATTATCAGATGTTTTGTTGTTGGATCAGATTTCAAATGCAGACTCTGTTACCTCTCAAGAGAGGAGAGATGAGAAAGGTCAGCTTTACTATGATTACGAGATTAATGGGCCTGCCTCTCATAGTTTAATCTCTGTTACATGTGCTAAGAATAAGCTTTATGCTCATTTTATTAACGCCCCTAATCCTGAATGGAATCGCGATCAGGACATGCTCCGCCATCTCCACAACTCCTTTCAAACTGTAGGTTCCTCCTCTTAA

mRNA sequence

ATGATGGCCACCCTATTATCAACATCATCACTTGTATCTACTTCCACATCCAGCTCTACAAAAGCACCCCATACTCAAACTTTATCCAAGCCCCAACAAGTTTGCTGCATAGTATCAAAACCAGCACCTCTAACTAATAACTTCAGCTTAACCAGTGCCATTGCTGCTGCCGCGGCTGCAGTTGTGATCCTATCAACGAGCTCCTCTCCATCACTAGCAGACTCCCCAACCCCAAACACATACAATATATACTACGGGACAGCAGCAAGCGCGGCCAACTATGGAGGGTATGGTGGGAATTCAAACAAGAAAGATTCAGCTGAGTACATATATGAAGTGCCCTCTGGTTGGAAAGAGAGGCAAGTGTCGAAAATTGAGAAGGGTACGAATGGAACAGACAGCGAGTTCTATAACCCAAAAAAGAAGACAGAAAGAGAGTATTTGACATTCTTATCTGGGTTTAGGCAACTTGATCCGATTCCAAAAGATGTAGTGCTTAATAACTTAGCATTATCAGATGTTTTGTTGTTGGATCAGATTTCAAATGCAGACTCTGTTACCTCTCAAGAGAGGAGAGATGAGAAAGGTCAGCTTTACTATGATTACGAGATTAATGGGCCTGCCTCTCATAGTTTAATCTCTGTTACATGTGCTAAGAATAAGCTTTATGCTCATTTTATTAACGCCCCTAATCCTGAATGGAATCGCGATCAGGACATGCTCCGCCATCTCCACAACTCCTTTCAAACTGTAGGTTCCTCCTCTTAA

Coding sequence (CDS)

ATGATGGCCACCCTATTATCAACATCATCACTTGTATCTACTTCCACATCCAGCTCTACAAAAGCACCCCATACTCAAACTTTATCCAAGCCCCAACAAGTTTGCTGCATAGTATCAAAACCAGCACCTCTAACTAATAACTTCAGCTTAACCAGTGCCATTGCTGCTGCCGCGGCTGCAGTTGTGATCCTATCAACGAGCTCCTCTCCATCACTAGCAGACTCCCCAACCCCAAACACATACAATATATACTACGGGACAGCAGCAAGCGCGGCCAACTATGGAGGGTATGGTGGGAATTCAAACAAGAAAGATTCAGCTGAGTACATATATGAAGTGCCCTCTGGTTGGAAAGAGAGGCAAGTGTCGAAAATTGAGAAGGGTACGAATGGAACAGACAGCGAGTTCTATAACCCAAAAAAGAAGACAGAAAGAGAGTATTTGACATTCTTATCTGGGTTTAGGCAACTTGATCCGATTCCAAAAGATGTAGTGCTTAATAACTTAGCATTATCAGATGTTTTGTTGTTGGATCAGATTTCAAATGCAGACTCTGTTACCTCTCAAGAGAGGAGAGATGAGAAAGGTCAGCTTTACTATGATTACGAGATTAATGGGCCTGCCTCTCATAGTTTAATCTCTGTTACATGTGCTAAGAATAAGCTTTATGCTCATTTTATTAACGCCCCTAATCCTGAATGGAATCGCGATCAGGACATGCTCCGCCATCTCCACAACTCCTTTCAAACTGTAGGTTCCTCCTCTTAA

Protein sequence

MMATLLSTSSLVSTSTSSSTKAPHTQTLSKPQQVCCIVSKPAPLTNNFSLTSAIAAAAAAVVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWKERQVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLDQISNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQDMLRHLHNSFQTVGSSS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo25503.1	Spo25503.1	mRNA

Homology

[Close]

BLAST of Spo25503.1 vs. NCBI nr
Match: gi|902125921|gb|KNA04092.1| (hypothetical protein SOVF_202870 [Spinacia oleracea])

HSP 1 Score: 490.7 bits (1262), Expect = 1.500e-135
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1


		  
Query: 1   MMATLLSTSSLVSTSTSSSTKAPHTQTLSKPQQVCCIVSKPAPLTNNFSLTSAIAAAAAA 60
           MMATLLSTSSLVSTSTSSSTKAPHTQTLSKPQQVCCIVSKPAPLTNNFSLTSAIAAAAAA
Sbjct: 1   MMATLLSTSSLVSTSTSSSTKAPHTQTLSKPQQVCCIVSKPAPLTNNFSLTSAIAAAAAA 60

Query: 61  VVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWKER 120
           VVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWKER
Sbjct: 61  VVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWKER 120

Query: 121 QVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLDQI 180
           QVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLDQI
Sbjct: 121 QVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLDQI 180

Query: 181 SNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQDM 240
           SNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQDM
Sbjct: 181 SNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQDM 240

Query: 241 LRHLHNSFQTVGSSS 256
           LRHLHNSFQTVGSSS
Sbjct: 241 LRHLHNSFQTVGSSS 255

[Close]

BLAST of Spo25503.1 vs. NCBI nr
Match: gi|731318148|ref|XP_010669566.1| (PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 352.8 bits (904), Expect = 4.900e-94
Identity = 193/253 (76.28%), Postives = 214/253 (84.58%), Query Frame = 1


		  
Query: 2   MATLLSTSSLVSTSTSSSTKAPHTQT--LSKPQQVCCIVSKPAPLTNNFSLTSAIAAAAA 61
           MA++ S S+LVSTS+S+  KAP TQ+  L+K  QV   + K  PLTN   LT+ + A   
Sbjct: 1   MASVFSASALVSTSSSTPAKAPQTQSPALNKASQVS--ICKLPPLTN---LTATLTAVTT 60

Query: 62  AVVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWKE 121
           A VILS SS PSLADS    +YNIYYGTAASAANYGGYGGNS+KKDSAEYIY VP GWKE
Sbjct: 61  AAVILS-SSPPSLADS----SYNIYYGTAASAANYGGYGGNSSKKDSAEYIYNVPDGWKE 120

Query: 122 RQVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLDQ 181
           R VSK+EKGTNGTDSEFYNPKKKTE+EYLTFLSG+RQLDPIPKDVVLNNLALSDVLL DQ
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLSGYRQLDPIPKDVVLNNLALSDVLLQDQ 180

Query: 182 ISNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQD 241
           ISNADSV+SQERRDEKGQLYYDYEI+  ASHSLISVTCA NKLYAHF+NAP PEWNRDQD
Sbjct: 181 ISNADSVSSQERRDEKGQLYYDYEIDAVASHSLISVTCANNKLYAHFVNAPTPEWNRDQD 240

Query: 242 MLRHLHNSFQTVG 253
           MLRH+H SF+T+G
Sbjct: 241 MLRHIHQSFKTLG 243

[Close]

BLAST of Spo25503.1 vs. NCBI nr
Match: gi|697116756|ref|XP_009612301.1| (PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Nicotiana tomentosiformis])

HSP 1 Score: 312.8 bits (800), Expect = 5.700e-82
Identity = 174/255 (68.24%), Postives = 201/255 (78.82%), Query Frame = 1


		  
Query: 2   MATLLSTSSLVSTSTSSST----KAPHTQTLSKPQQVCCIVSKPAPLTNNFSLTSAIAAA 61
           MAT+L  SS +S+S+SS+T    K P     S+P       SKP  +     LT+ + A 
Sbjct: 1   MATILHHSSFLSSSSSSTTTTTTKPPIPPPFSRPHATLSPPSKPLLI----KLTTTLTAT 60

Query: 62  AAAVVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGW 121
           A A  IL+T+S PSLADSPT  TY IYYGTAASAANYGGYGGNS+KK SAEYIY+VP GW
Sbjct: 61  ALATTILTTTS-PSLADSPT--TYKIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGW 120

Query: 122 KERQVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLL 181
           KER VSK+EKGTNGTDSEFYNPKKKTE+EYLT+L+GFRQL   PKD VLNNLALSDV L 
Sbjct: 121 KERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTYLAGFRQL--APKDAVLNNLALSDVNLQ 180

Query: 182 DQISNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRD 241
           D I+NADSVTS+ER+DE GQLYYDYEI+G  +HSLI+VTCAKNKLYAHF+NAP PEW +D
Sbjct: 181 DIIANADSVTSEERKDENGQLYYDYEIDGVTAHSLITVTCAKNKLYAHFVNAPAPEWKKD 240

Query: 242 QDMLRHLHNSFQTVG 253
           QD LRH+H SF+TVG
Sbjct: 241 QDTLRHIHQSFKTVG 246

[Close]

BLAST of Spo25503.1 vs. NCBI nr
Match: gi|225450155|ref|XP_002275752.1| (PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Vitis vinifera])

HSP 1 Score: 311.6 bits (797), Expect = 1.300e-81
Identity = 172/254 (67.72%), Postives = 203/254 (79.92%), Query Frame = 1


		  
Query: 2   MATLLSTSSLVSTSTSSSTKAPHTQTLSK--PQQVCCIVSKPAPLTNNFSLTSAIAAAAA 61
           MATL S S+L ST++SSS+ +  T   SK  P +    +  P P T N  +T  + A AA
Sbjct: 1   MATLFSPSALFSTTSSSSSSSTTTTKPSKAPPPKPLLTLKPPPPPTTNLIVT--LTATAA 60

Query: 62  AVVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWKE 121
           A+V+  T++ PSLAD P   +YNIYYGTAASAANYGGYGGNSN++DSAEY+Y+VP GWKE
Sbjct: 61  ALVL--TTTPPSLADPP--KSYNIYYGTAASAANYGGYGGNSNRQDSAEYVYDVPDGWKE 120

Query: 122 RQVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLDQ 181
           R VSK+EKGTNGTDSEFYNPKKK+E+EYLTFLSGFRQL   PKDVVLNNLALSDV L D 
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKKSEKEYLTFLSGFRQL--APKDVVLNNLALSDVSLQDL 180

Query: 182 ISNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQD 241
           IS+ADSV S+E++DEKGQ+YY YEI+G  +HSLISVTCAKNKLYAHF+NAP PEW RD+D
Sbjct: 181 ISSADSVKSEEKKDEKGQVYYVYEIDGVGAHSLISVTCAKNKLYAHFVNAPAPEWTRDKD 240

Query: 242 MLRHLHNSFQTVGS 254
            L HLH SF+TVGS
Sbjct: 241 TLMHLHESFKTVGS 246

[Close]

BLAST of Spo25503.1 vs. NCBI nr
Match: gi|147787657|emb|CAN69573.1| (hypothetical protein VITISV_028610 [Vitis vinifera])

HSP 1 Score: 310.1 bits (793), Expect = 3.700e-81
Identity = 172/255 (67.45%), Postives = 202/255 (79.22%), Query Frame = 1


		  
Query: 2   MATLLSTSSLVSTSTSSSTKAPHTQTLSK---PQQVCCIVSKPAPLTNNFSLTSAIAAAA 61
           MATL S S+L ST++SSS+    T   SK   P+ +  +   P P T N  +T  + A A
Sbjct: 1   MATLFSPSALFSTTSSSSSSXTTTTKPSKAPPPKPLLTLKPPPPPPTTNLIVT--LTATA 60

Query: 62  AAVVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWK 121
           AA+V+  T + PSLAD P   +YNIYYGTAASAANYGGYGGNSN++DSAEY+Y+VP GWK
Sbjct: 61  AALVL--TITPPSLADPP--KSYNIYYGTAASAANYGGYGGNSNRQDSAEYVYDVPDGWK 120

Query: 122 ERQVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLD 181
           ER VSK+EKGTNGTDSEFYNPKKK+E+EYLTFLSGFRQL   PKDVVLNNLALSDV L D
Sbjct: 121 ERLVSKVEKGTNGTDSEFYNPKKKSEKEYLTFLSGFRQL--APKDVVLNNLALSDVSLQD 180

Query: 182 QISNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQ 241
            IS+ADSV S+E++DEKGQ+YY YEI+G  +HSLISVTCAKNKLYAHF+NAP PEW RD+
Sbjct: 181 LISSADSVKSEEKKDEKGQVYYVYEIDGVGAHSLISVTCAKNKLYAHFVNAPAPEWTRDK 240

Query: 242 DMLRHLHNSFQTVGS 254
           D L HLH SF+TVGS
Sbjct: 241 DTLMHLHESFKTVGS 247

[Close]

BLAST of Spo25503.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9Y6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_202870 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 1.100e-135
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 1


		  
Query: 1   MMATLLSTSSLVSTSTSSSTKAPHTQTLSKPQQVCCIVSKPAPLTNNFSLTSAIAAAAAA 60
           MMATLLSTSSLVSTSTSSSTKAPHTQTLSKPQQVCCIVSKPAPLTNNFSLTSAIAAAAAA
Sbjct: 1   MMATLLSTSSLVSTSTSSSTKAPHTQTLSKPQQVCCIVSKPAPLTNNFSLTSAIAAAAAA 60

Query: 61  VVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWKER 120
           VVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWKER
Sbjct: 61  VVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWKER 120

Query: 121 QVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLDQI 180
           QVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLDQI
Sbjct: 121 QVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLDQI 180

Query: 181 SNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQDM 240
           SNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQDM
Sbjct: 181 SNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQDM 240

Query: 241 LRHLHNSFQTVGSSS 256
           LRHLHNSFQTVGSSS
Sbjct: 241 LRHLHNSFQTVGSSS 255

[Close]

BLAST of Spo25503.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CV63_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g035660 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.400e-94
Identity = 193/253 (76.28%), Postives = 214/253 (84.58%), Query Frame = 1


		  
Query: 2   MATLLSTSSLVSTSTSSSTKAPHTQT--LSKPQQVCCIVSKPAPLTNNFSLTSAIAAAAA 61
           MA++ S S+LVSTS+S+  KAP TQ+  L+K  QV   + K  PLTN   LT+ + A   
Sbjct: 1   MASVFSASALVSTSSSTPAKAPQTQSPALNKASQVS--ICKLPPLTN---LTATLTAVTT 60

Query: 62  AVVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWKE 121
           A VILS SS PSLADS    +YNIYYGTAASAANYGGYGGNS+KKDSAEYIY VP GWKE
Sbjct: 61  AAVILS-SSPPSLADS----SYNIYYGTAASAANYGGYGGNSSKKDSAEYIYNVPDGWKE 120

Query: 122 RQVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLDQ 181
           R VSK+EKGTNGTDSEFYNPKKKTE+EYLTFLSG+RQLDPIPKDVVLNNLALSDVLL DQ
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLSGYRQLDPIPKDVVLNNLALSDVLLQDQ 180

Query: 182 ISNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQD 241
           ISNADSV+SQERRDEKGQLYYDYEI+  ASHSLISVTCA NKLYAHF+NAP PEWNRDQD
Sbjct: 181 ISNADSVSSQERRDEKGQLYYDYEIDAVASHSLISVTCANNKLYAHFVNAPTPEWNRDQD 240

Query: 242 MLRHLHNSFQTVG 253
           MLRH+H SF+T+G
Sbjct: 241 MLRHIHQSFKTLG 243

[Close]

BLAST of Spo25503.1 vs. UniProtKB/TrEMBL
Match: F6HBE1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01080 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 8.800e-82
Identity = 172/254 (67.72%), Postives = 203/254 (79.92%), Query Frame = 1


		  
Query: 2   MATLLSTSSLVSTSTSSSTKAPHTQTLSK--PQQVCCIVSKPAPLTNNFSLTSAIAAAAA 61
           MATL S S+L ST++SSS+ +  T   SK  P +    +  P P T N  +T  + A AA
Sbjct: 1   MATLFSPSALFSTTSSSSSSSTTTTKPSKAPPPKPLLTLKPPPPPTTNLIVT--LTATAA 60

Query: 62  AVVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWKE 121
           A+V+  T++ PSLAD P   +YNIYYGTAASAANYGGYGGNSN++DSAEY+Y+VP GWKE
Sbjct: 61  ALVL--TTTPPSLADPP--KSYNIYYGTAASAANYGGYGGNSNRQDSAEYVYDVPDGWKE 120

Query: 122 RQVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLDQ 181
           R VSK+EKGTNGTDSEFYNPKKK+E+EYLTFLSGFRQL   PKDVVLNNLALSDV L D 
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKKSEKEYLTFLSGFRQL--APKDVVLNNLALSDVSLQDL 180

Query: 182 ISNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQD 241
           IS+ADSV S+E++DEKGQ+YY YEI+G  +HSLISVTCAKNKLYAHF+NAP PEW RD+D
Sbjct: 181 ISSADSVKSEEKKDEKGQVYYVYEIDGVGAHSLISVTCAKNKLYAHFVNAPAPEWTRDKD 240

Query: 242 MLRHLHNSFQTVGS 254
            L HLH SF+TVGS
Sbjct: 241 TLMHLHESFKTVGS 246

[Close]

BLAST of Spo25503.1 vs. UniProtKB/TrEMBL
Match: A5B1G1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028610 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.600e-81
Identity = 172/255 (67.45%), Postives = 202/255 (79.22%), Query Frame = 1


		  
Query: 2   MATLLSTSSLVSTSTSSSTKAPHTQTLSK---PQQVCCIVSKPAPLTNNFSLTSAIAAAA 61
           MATL S S+L ST++SSS+    T   SK   P+ +  +   P P T N  +T  + A A
Sbjct: 1   MATLFSPSALFSTTSSSSSSXTTTTKPSKAPPPKPLLTLKPPPPPPTTNLIVT--LTATA 60

Query: 62  AAVVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWK 121
           AA+V+  T + PSLAD P   +YNIYYGTAASAANYGGYGGNSN++DSAEY+Y+VP GWK
Sbjct: 61  AALVL--TITPPSLADPP--KSYNIYYGTAASAANYGGYGGNSNRQDSAEYVYDVPDGWK 120

Query: 122 ERQVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLD 181
           ER VSK+EKGTNGTDSEFYNPKKK+E+EYLTFLSGFRQL   PKDVVLNNLALSDV L D
Sbjct: 121 ERLVSKVEKGTNGTDSEFYNPKKKSEKEYLTFLSGFRQL--APKDVVLNNLALSDVSLQD 180

Query: 182 QISNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQ 241
            IS+ADSV S+E++DEKGQ+YY YEI+G  +HSLISVTCAKNKLYAHF+NAP PEW RD+
Sbjct: 181 LISSADSVKSEEKKDEKGQVYYVYEIDGVGAHSLISVTCAKNKLYAHFVNAPAPEWTRDK 240

Query: 242 DMLRHLHNSFQTVGS 254
           D L HLH SF+TVGS
Sbjct: 241 DTLMHLHESFKTVGS 247

[Close]

BLAST of Spo25503.1 vs. UniProtKB/TrEMBL
Match: M1A9C3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006872 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.200e-80
Identity = 169/254 (66.54%), Postives = 199/254 (78.35%), Query Frame = 1


		  
Query: 2   MATLLSTSSLVST---STSSSTKAPHTQTLSKPQQVCCIVSKPAPLTNNFSLTSAIAAAA 61
           MA++L  SS +S+   ST+++TK P T   S+PQ      SKP        L + + A A
Sbjct: 1   MASILHPSSFLSSASSSTTTTTKPPVTPPFSRPQSTLSPPSKP--------LLTKLTATA 60

Query: 62  AAVVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYIYEVPSGWK 121
            A  IL+TS  PSLADSPT  ++NIYYGTAASAANYGGYGGNS+KK SAEYIY+VP GWK
Sbjct: 61  IATTILTTSL-PSLADSPT--SFNIYYGTAASAANYGGYGGNSDKKASAEYIYDVPDGWK 120

Query: 122 ERQVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLALSDVLLLD 181
           ER VSK+EKGTNGTDSEFYNPKKKTE+EYLT+L+GFRQL   PKD++LNNLALSDV L D
Sbjct: 121 ERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTYLAGFRQL--APKDIILNNLALSDVNLQD 180

Query: 182 QISNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPNPEWNRDQ 241
            I+NAD VTS+ER+DE GQLYYDYEI+G   HSLISVTCA NKLYAHF+NAP PEW RD+
Sbjct: 181 LIANADGVTSEERKDENGQLYYDYEIDGVLGHSLISVTCANNKLYAHFVNAPAPEWKRDE 240

Query: 242 DMLRHLHNSFQTVG 253
            +LRH+H SF+TVG
Sbjct: 241 GILRHVHQSFKTVG 241

[Close]

BLAST of Spo25503.1 vs. ExPASy Swiss-Prot
Match: TL19_ARATH (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 272.3 bits (695), Expect = 5.300e-72
Identity = 139/204 (68.14%), Postives = 162/204 (79.41%), Query Frame = 1


		  
Query: 51  TSAIAAAAAAVVILSTSSSPSLADSPTPNTYNIYYGTAASAANYGGYGGNSNKKDSAEYI 110
           TS  AA AA  V+      P+  +     TY IYYGTAASAANYGGYGGNS++K SAEY+
Sbjct: 30  TSLAAALAATSVLTMVPVLPAAGEGN--QTYKIYYGTAASAANYGGYGGNSDRKTSAEYV 89

Query: 111 YEVPSGWKERQVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLA 170
           Y+VP GWKER VSK+EKGTNGTDSEFYNPKKKTE+EYLTFL+GFRQL   P+DV+LNNLA
Sbjct: 90  YDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQL--APRDVILNNLA 149

Query: 171 LSDVLLLDQISNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAP 230
           LSDV L D I+ AD V S+ER+DE GQ+YY YEI+G   HSLI+VTC+KN+LYAHF+NAP
Sbjct: 150 LSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAP 209

Query: 231 NPEWNRDQDMLRHLHNSFQTVGSS 255
            PEWNRD D L HL +SF+TV SS
Sbjct: 210 APEWNRDHDTLTHLRDSFKTVSSS 229

[Close]

BLAST of Spo25503.1 vs. TAIR (Arabidopsis)
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 217.2 bits (552), Expect = 1.100e-56
Identity = 105/143 (73.43%), Postives = 120/143 (83.92%), Query Frame = 1


		  
Query: 112 EVPSGWKERQVSKIEKGTNGTDSEFYNPKKKTEREYLTFLSGFRQLDPIPKDVVLNNLAL 171
           EV  GWKER VSK+EKGTNGTDSEFYNPKKKTE+EYLTFL+GFRQL   P+DV+LNNLAL
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQL--APRDVILNNLAL 62

Query: 172 SDVLLLDQISNADSVTSQERRDEKGQLYYDYEINGPASHSLISVTCAKNKLYAHFINAPN 231
           SDV L D I+ AD V S+ER+DE GQ+YY YEI+G   HSLI+VTC+KNKLYAHF+NAP 
Sbjct: 63  SDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPA 122

Query: 232 PEWNRDQDMLRHLHNSFQTVGSS 255
           PEWNRD D L HL +SF+TV SS
Sbjct: 123 PEWNRDHDTLTHLRDSFKTVSSS 143

The following BLAST results are available for this feature:

BLAST of Spo25503.1 vs. NCBI nr
BLAST of Spo25503.1 vs. UniProtKB/TrEMBL
BLAST of Spo25503.1 vs. ExPASy Swiss-Prot
BLAST of Spo25503.1 vs. TAIR (Arabidopsis)

BLAST of Spo25503.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902125921\|gb\|KNA04092.1\|	1.5e-135	100.	hypothetical protein SOVF_2028...	[more]
gi\|731318148\|ref\|XP_010669566.1\|	4.9e-94	76.2	PREDICTED: thylakoid lumenal 1...	[more]
gi\|697116756\|ref\|XP_009612301.1\|	5.7e-82	68.2	PREDICTED: thylakoid lumenal 1...	[more]
gi\|225450155\|ref\|XP_002275752.1\|	1.3e-81	67.7	PREDICTED: thylakoid lumenal 1...	[more]
gi\|147787657\|emb\|CAN69573.1\|	3.7e-81	67.4	hypothetical protein VITISV_02...	[more]

BLAST of Spo25503.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9Q9Y6_SPIOL	1.1e-135	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CV63_BETVU	3.4e-94	76.2	Uncharacterized protein OS=Bet...	[more]
F6HBE1_VITVI	8.8e-82	67.7	Putative uncharacterized prote...	[more]
A5B1G1_VITVI	2.6e-81	67.4	Putative uncharacterized prote...	[more]
M1A9C3_SOLTU	2.2e-80	66.5	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo25503.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
TL19_ARATH	5.3e-72	68.1	Thylakoid lumenal 19 kDa prote...	[more]

BLAST of Spo25503.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G63540.1	1.1e-56	73.4	Mog1/PsbP/DUF1795-like photosy...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 103..249 score: 2.7
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	3.40.1000.10		coord: 103..249 score: 1.3
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	unknown	SSF55724	Mog1p/PsbP-like	coord: 106..250 score: 1.94
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 1..251 score: 2.0E
None	No IPR available	PANTHER	PTHR31407:SF20	THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTIC	coord: 1..251 score: 2.0E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0048481	plant ovule development
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019852	L-ascorbic acid metabolic process
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0007389	pattern specification process
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0010731	protein glutathionylation
biological_process	GO:0010583	response to cyclopentenone
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0009636	response to toxic substance
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0048767	root hair elongation
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0006090	pyruvate metabolic process
biological_process	GO:0000271	polysaccharide biosynthetic process
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0006021	inositol biosynthetic process
biological_process	GO:0009825	multidimensional cell growth
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0042793	plastid transcription
biological_process	GO:0016556	mRNA modification
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0015976	carbon utilization
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0006000	fructose metabolic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006284	base-excision repair
biological_process	GO:0006013	mannose metabolic process
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0006306	DNA methylation
biological_process	GO:0000737	DNA catabolic process, endonucleolytic
biological_process	GO:0006285	base-excision repair, AP site formation
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0005986	sucrose biosynthetic process
biological_process	GO:0019872	streptomycin biosynthetic process
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0046854	phosphatidylinositol phosphorylation
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0009932	cell tip growth
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0009697	salicylic acid biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009409	response to cold
biological_process	GO:0010200	response to chitin
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0043900	regulation of multi-organism process
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0009657	plastid organization
biological_process	GO:0006508	proteolysis
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009853	photorespiration
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0009595	detection of biotic stimulus
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0009733	response to auxin
biological_process	GO:0001510	RNA methylation
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0016043	cellular component organization
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0016049	cell growth
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0006084	acetyl-CoA metabolic process
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0048653	anther development
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0043481	anthocyanin accumulation in tissues in response to UV light
biological_process	GO:0016132	brassinosteroid biosynthetic process
biological_process	GO:0060560	developmental growth involved in morphogenesis
biological_process	GO:0048869	cellular developmental process
biological_process	GO:0010817	regulation of hormone levels
cellular_component	GO:0009317	acetyl-CoA carboxylase complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030904	retromer complex
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000312	plastid small ribosomal subunit
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0004364	glutathione transferase activity
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0045174	glutathione dehydrogenase (ascorbate) activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0042132	fructose 1,6-bisphosphate 1-phosphatase activity
molecular_function	GO:0050278	sedoheptulose-bisphosphatase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0022857	transmembrane transporter activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0003989	acetyl-CoA carboxylase activity
molecular_function	GO:0009374	biotin binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0004045	aminoacyl-tRNA hydrolase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046914	transition metal ion binding
molecular_function	GO:0008934	inositol monophosphate 1-phosphatase activity
molecular_function	GO:0052832	inositol monophosphate 3-phosphatase activity
molecular_function	GO:0052833	inositol monophosphate 4-phosphatase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0031177	phosphopantetheine binding
molecular_function	GO:0005094	Rho GDP-dissociation inhibitor activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0008534	oxidized purine nucleobase lesion DNA N-glycosylase activity
molecular_function	GO:0008725	DNA-3-methyladenine glycosylase activity
molecular_function	GO:0052822	DNA-3-methylguanine glycosylase activity
molecular_function	GO:0052821	DNA-7-methyladenine glycosylase activity
molecular_function	GO:0043916	DNA-7-methylguanine glycosylase activity
molecular_function	GO:0046983	protein dimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo01967	0.88	Barchart \| Table
Spo10820	0.86	Barchart \| Table
Spo10817	0.83	Barchart \| Table
Spo00538	0.83	Barchart \| Table
Spo08497	0.81	Barchart \| Table
Spo27236	0.79	Barchart \| Table
Spo24307	0.78	Barchart \| Table
Spo11629	0.77	Barchart \| Table
Spo15244	0.77	Barchart \| Table
Spo04387	0.76	Barchart \| Table
Spo00754	0.75	Barchart \| Table
Spo04037	0.75	Barchart \| Table
Spo15608	0.74	Barchart \| Table
Spo16392	0.74	Barchart \| Table
Spo21716	0.73	Barchart \| Table
Spo11804	0.73	Barchart \| Table
Spo19305	0.73	Barchart \| Table
Spo09460	0.73	Barchart \| Table
Spo12379	0.73	Barchart \| Table
Spo05708	0.72	Barchart \| Table
Spo23874	0.72	Barchart \| Table
Spo03213	0.71	Barchart \| Table
Spo04959	0.71	Barchart \| Table
Spo11336	0.71	Barchart \| Table
Spo05810	0.71	Barchart \| Table
Spo15343	0.70	Barchart \| Table
Spo15984	0.70	Barchart \| Table
Spo21827	0.70	Barchart \| Table
Spo23067	0.70	Barchart \| Table
Spo26907	0.70	Barchart \| Table
Spo21300	0.69	Barchart \| Table
Spo09321	0.69	Barchart \| Table
Spo07549	0.69	Barchart \| Table
Spo14051	0.69	Barchart \| Table
Spo13428	0.69	Barchart \| Table
Spo10300	0.68	Barchart \| Table
Spo03006	0.68	Barchart \| Table
Spo19407	0.68	Barchart \| Table
Spo06508	0.67	Barchart \| Table
Spo25995	0.67	Barchart \| Table
Spo25175	0.66	Barchart \| Table
Spo04153	0.66	Barchart \| Table
Spo10716	0.66	Barchart \| Table
Spo06936	0.66	Barchart \| Table
Spo04371	0.66	Barchart \| Table
Spo21243	0.65	Barchart \| Table
Spo17884	0.65	Barchart \| Table
Spo09469	0.65	Barchart \| Table