Spo25369 (gene)

Overview
NameSpo25369
Typegene
OrganismSpinacia oleracea (Spinach)
Description30S ribosomal protein S31, chloroplastic (Plastid-specific 30S ribosomal protein 4) (PSRP-4) (Precursor)
Locationchr1 : 23640167 .. 23643453 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCATTTTACAAACCACGCCTATATTAGTGTCTGTCACTTGTCACCCGCTTGCATCCTATCCTCATTCTCTTATCTTCAGAACTTGTTGCAATGGCTTCACTGCTACTCGGAACCCCTTCCATGGCGTGCCACTCCGTCTCTTTCTCCTTCTCTCATTCTCAGTCCGTCGCCGGGGTTTCTCTCTCCTCTCCGCCGACATTATCTCTATCTTCTTCCGTCTCCACCTCTCCAGCTCTGCCACTCAGTAAGTTCTTTGCACTCTACTAATTAATCAATGAATTAATCCCCAATTTTTGCAATTGGAAACCCTAATTTCCTTTTCTTCTCCAAATTCAAACTCAATTGCCTGTTTTTCACCTTTTATCTATGCCTAATTTGTTTGATGATTTTTTGTTGGTGTTAGTTTACTGCGGCAGAGGTGACAGGAAGACCGCCAAAGGCAAACGCTTTAACCACTCCTTTGGAAATGTCAGTTCTCTTTCCATCACTCTATCTTTCATTCTTTCTTTGGTTGTTTTTCCTTCATGTTTCTAGTGCATTCAAACCTACTAATTTGGTTCCTGATTTAATTGTCGCTGTACTAGTTTAAATTACACTATCAACTTGACTATTAGTTTTAGACGGAGGAAGTATCATTTACAGTATATCATATTGATTCTGTATGAGGTATTGAGGTGTGTACTTGATTGCCTACAAAATTCTATCTATATCTTGAAGCTATACCCAAATTAATAATGACAATGTGAGACATATGCACAAAGTTTTCTAAGACAAAGTCTATGTTGTTAGTTGTTCTAATGTATGCACTTCCACCTTTGTAATTGCTTGGTTGAGATAATGTAGCGTAAAATTGCTTCTCTAACAAAGTTCTGGTCAGATAATTCATTTAGACTGGCAACTCTAGTGGAACGAATAGAAGAATTTGAAGAAAGTGGTATTATTCGTTGATACTCTCATTTGTTTCTGGTTTGTGTTGTCCGTTGGTGAGGGTATTATTGTTGAAAATATTTAGAGGAGTGAAGTTAATTGGTTGTTGAATCTAGTTACAAGCAAGTGATATTTCCTCAAAATTCGTAGTTTTATGAGTGATCTTGATGAATAGACTAGCACATAGAACAAGCTCTTACATTAATGTGATCTTATTTGTTGAATTGAACAAGTATTTGTATTTACACACATTGTCCGGATTGAAATTTCAGGCGAGACCCAAGAACAAGAACAAGGGAAGAGGTCCTCCAAAAGCGCCAATCTTCCCTAAAGGGGATCCATCTCAGAAAGAGGATTGATGATGAGTAGCTAAGTTGGTTCTGAATAGGATATTTTGTTGAGGTAATCCTTGCCCCTCTTCCTATCTGTTACGTATCAGGATGGTACTTGAGTTGTTAATGTAATTTTGTGTTCAGTTAGCTCTTGTGATATTGTAAACCTTATTTGTGGAAGAAATTGTGGATCCACTACTTATTATATATGATGATTTGTTGAAGCCTTTGCATTAAGTCTGCTTAGTATCTGATGGAATCACTGTGCTTTTTGCAACTTTGTTCAAAGACTTTTCTGTTGTTGAATTTAGTTTTATGAAAATTTTCAACAAGGTTGTTTGAGGCGCAACACTGTATGTTTTTTGCAACTTCGAGTCAGGAAGATTTTTCTGGTGTTGAATCTTGTTTATGAAAATTGTCTGTTAAGGTCATTAGTGCTTAACCCTTTTGTAATGGCTAGGTTAGCCTTGTAGCCAGCCGAGAAGGCAAAGACACTCGTGCCAAGGCCTATGTTCTGTCATATTGTGAACCTTGATTTAAGATTGTTATTGTCTCATTTGTACAAAGTATATAAATTAGGGAGGGTAGGCGACTCTGCGTGGCAGCTTCTACTGTGACAAACTTGCACTAGGACCATAGTTCATGACCAAAATTGTCCCCGGTGAAACTCTTTTCCAAGGCTATATTCATAGTTGTAAGATCCTTTTAATTGGAGGGAAATGTTGCCAGAATCTGTTGGAAAGCACAGCTTCCTCTAATGAGTATGAAAAACATTCATGACTCCAATTGTCACCTACAGCCAATTAAGATAAACTGCAACTTCCAGTCGTTGGAAATTATCTCCAAGTATCCCAAGCAACCTCGTCAAAGGTTCTGATTTGTCCCTATAGCCATAGATAGCATAATACTTAAATTGCACATAGGCCACATCGAACTCATTTACAAAGCCATAAGTCCTATAACCCACAACGTCTTTGAGACACTTTTGGAGATTACTGAAAATATTTAATATACTTAGAGGGAGGGAACTGAGGGAAGGCTCCCCGAATCAGACATAAGCTCCCAGGGTTCCTCAGATTCAAAACTGTCGTCAGTGAACGCTCATTTTCCTGAACTATAGCTCATATCTCAGGATTCTCATGAGCCATAGCATGATAGGAACCATAGGTGATACCAGATACAAAACCTGTGAACGCTCATTTTCCTGAACTAGCTCATATCACAGGATTTTCTTGACTAACTGCAATGGCAAGACTCTAGAGTGGCTTCTAGAGAATTCTTTCTACATGCAATTCTTTACCTCATGACTCATGTCATCATCAAACAGTATAAACTTAAAGGTTATTGTGTTATGAAGCGAAAGGATCTGATTCAAATTCGAAATAAATTTATCCGACTACAACTTTGATGTAGTTTGGAAATTAGTTTGATAAATTTATCCGACTACAACTTTTAACAGTTTTGAATCTGAGGAACCCTTACCCCGCTCTTTGCGGGAGCTTCTTTGAGGCAATGGGGTAATGATATGATGACAACTTTGATGTAAAAATCCAACTCTGAGTAGGAGGGCCGGAATCGGAATTGTGTCCTGACTCCAACCCGAATGCAACTTATAGTGTAAGCAGATGATTTGCATAACATTAGTAATATTGTTCAATTTTTTCTGAAAATTTAATAAAGTAACATCGCTTTATGATAAAAAGTGTGGATTGGGACTGGGATCAGAGCGGTTGGACCTCGAATGACAGGAGGCAATTCAGATTCGGAGTCGAATCGGACTCCGGCTACAATTCAGTTCGAGTCGGATTATGAGGTATATTATTTGAGTCCTCAAAGTTTGTTACAGTTTGCTCTTTTTGTCACGTATTGAGCATGGATTGACACTTGCTGATCTATTGAGCATGGATTGACACTGAAGTAAGTGTTATGCGGTTTAATAGGAGACCGTTGTTAGCCATTTATGTACAAAAGGAATAGGTATTCTCTTACCTCATTAGTTTGGAAATTTGTTCACGACTGCACTGAGG

mRNA sequence

TTCATTTTACAAACCACGCCTATATTAGTGTCTGTCACTTGTCACCCGCTTGCATCCTATCCTCATTCTCTTATCTTCAGAACTTGTTGCAATGGCTTCACTGCTACTCGGAACCCCTTCCATGGCGTGCCACTCCGTCTCTTTCTCCTTCTCTCATTCTCAGTCCGTCGCCGGGGTTTCTCTCTCCTCTCCGCCGACATTATCTCTATCTTCTTCCGTCTCCACCTCTCCAGCTCTGCCACTCATTTACTGCGGCAGAGGTGACAGGAAGACCGCCAAAGGCAAACGCTTTAACCACTCCTTTGGAAATGCGAGACCCAAGAACAAGAACAAGGGAAGAGGTCCTCCAAAAGCGCCAATCTTCCCTAAAGGGGATCCATCTCAGAAAGAGGATTGATGATGAGTAGCTAAGTTGGTTCTGAATAGGATATTTTGTTGAGGTAATCCTTGCCCCTCTTCCTATCTGTTACGTATCAGGATGGTACTTGAGTTGTTAATGTAATTTTGTGTTCAGTTAGCTCTTGTGATATTGTAAACCTTATTTGTGGAAGAAATTGTGGATCCACTACTTATTATATATGATGATTTGTTGAAGCCTTTGCATTAAGTCTGCTTAGTATCTGATGGAATCACTGTGCTTTTTGCAACTTTGTTCAAAGACTTTTCTGTTGTTGAATTTAGTTTTATGAAAATTTTCAACAAGGTTGTTTGAGGCGCAACACTGTATGTTTTTTGCAACTTCGAGTCAGGAAGATTTTTCTGGTGTTGAATCTTGTTTATGAAAATTGTCTGTTAAGGTCATTAGTGCTTAACCCTTTTGTAATGGCTAGGTTAGCCTTGTAGCCAGCCGAGAAGGCAAAGACACTCGTGCCAAGGCCTATGTTCTGTCATATTGTGAACCTTGATTTAAGATTGTTATTGTCTCATTTGTACAAAGTATATAAATTAGGGAGGGTAGGCGACTCTGCGTGGCAGCTTCTACTGTGACAAACTTGCACTAGGACCATAGTTCATGACCAAAATTGTCCCCGGTGAAACTCTTTTCCAAGGCTATATTCATAGTTGTAAGATCCTTTTAATTGGAGGGAAATGTTGCCAGAATCTGTTGGAAAGCACAGCTTCCTCTAATGAGTATGAAAAACATTCATGACTCCAATTGTCACCTACAGCCAATTAAGATAAACTGCAACTTCCAGTCGTTGGAAATTATCTCCAAGTATCCCAAGCAACCTCGTCAAAGGTTCTGATTTGTCCCTATAGCCATAGATAGCATAATACTTAAATTGCACATAGGCCACATCGAACTCATTTACAAAGCCATAAGTCCTATAACCCACAACGTCTTTGAGACACTTTTGGAGATTACTGAAAATATTTAATATACTTAGAGGGAGGGAACTGAGGGAAGGCTCCCCGAATCAGACATAAGCTCCCAGGGTTCCTCAGATTCAAAACTGTCGTCAGTGAACGCTCATTTTCCTGAACTATAGCTCATATCTCAGGATTCTCATGAGCCATAGCATGATAGGAACCATAGGTGATACCAGATACAAAACCTGTGAACGCTCATTTTCCTGAACTAGCTCATATCACAGGATTTTCTTGACTAACTGCAATGGCAAGACTCTAGAGTGGCTTCTAGAGAATTCTTTCTACATGCAATTCTTTACCTCATGACTCATGTCATCATCAAACAGTATAAACTTAAAGGTTATTGTGTTATGAAGCGAAAGGATCTGATTCAAATTCGAAATAAATTTATCCGACTACAACTTTGATGTAGTTTGGAAATTAGTTTGATAAATTTATCCGACTACAACTTTTAACAGTTTTGAATCTGAGGAACCCTTACCCCGCTCTTTGCGGGAGCTTCTTTGAGGCAATGGGGTAATGATATGATGACAACTTTGATGTAAAAATCCAACTCTGAGTAGGAGGGCCGGAATCGGAATTGTGTCCTGACTCCAACCCGAATGCAACTTATAGTGTAAGCAGATGATTTGCATAACATTAGTAATATTGTTCAATTTTTTCTGAAAATTTAATAAAGTAACATCGCTTTATGATAAAAAGTGTGGATTGGGACTGGGATCAGAGCGGTTGGACCTCGAATGACAGGAGGCAATTCAGATTCGGAGTCGAATCGGACTCCGGCTACAATTCAGTTCGAGTCGGATTATGAGGTATATTATTTGAGTCCTCAAAGTTTGTTACAGTTTGCTCTTTTTGTCACGTATTGAGCATGGATTGACACTTGCTGATCTATTGAGCATGGATTGACACTGAAGTAAGTGTTATGCGGTTTAATAGGAGACCGTTGTTAGCCATTTATGTACAAAAGGAATAGGTATTCTCTTACCTCATTAGTTTGGAAATTTGTTCACGACTGCACTGAGG

Coding sequence (CDS)

ATGGCTTCACTGCTACTCGGAACCCCTTCCATGGCGTGCCACTCCGTCTCTTTCTCCTTCTCTCATTCTCAGTCCGTCGCCGGGGTTTCTCTCTCCTCTCCGCCGACATTATCTCTATCTTCTTCCGTCTCCACCTCTCCAGCTCTGCCACTCATTTACTGCGGCAGAGGTGACAGGAAGACCGCCAAAGGCAAACGCTTTAACCACTCCTTTGGAAATGCGAGACCCAAGAACAAGAACAAGGGAAGAGGTCCTCCAAAAGCGCCAATCTTCCCTAAAGGGGATCCATCTCAGAAAGAGGATTGA

Protein sequence

MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo25369.1Spo25369.1mRNA


Homology
[Close]
BLAST of Spo25369.1 vs. NCBI nr
Match: gi|114152868|sp|P47910.2|RR31_SPIOL (RecName: Full=30S ribosomal protein S31, chloroplastic; AltName: Full=Plastid-specific 30S ribosomal protein 4; Short=PSRP-4; Flags: Precursor [Spinacia oleracea])

HSP 1 Score: 194.5 bits (493), Expect = 8.900e-47
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

		  

Query: 1   MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRK 60
           MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRK
Sbjct: 1   MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRK 60

Query: 61  TAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 102
           TAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED
Sbjct: 61  TAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 101
[Close]
BLAST of Spo25369.1 vs. NCBI nr
Match: gi|731315088|ref|XP_010689852.1| (PREDICTED: 30S ribosomal protein S31, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 154.5 bits (389), Expect = 1.000e-34
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 1 

		  

Query: 1  MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSV-STSPALPLIYCGRGDR 60
          MASL+LGT SMA  + S SFS S SVAGVSLSSPPTLSLS+SV STSPALPLIYCGRGD+
Sbjct: 1  MASLILGTTSMASCAFSLSFSQSHSVAGVSLSSPPTLSLSTSVASTSPALPLIYCGRGDK 60

Query: 61 KTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQ 99
          KTAKGKRFNHSFGNARP+NKNKGRGPPKAPIFPK DPS+
Sbjct: 61 KTAKGKRFNHSFGNARPRNKNKGRGPPKAPIFPKEDPSE 99
[Close]
BLAST of Spo25369.1 vs. NCBI nr
Match: gi|848915539|ref|XP_012855500.1| (PREDICTED: 30S ribosomal protein S31, chloroplastic [Erythranthe guttata])

HSP 1 Score: 102.4 bits (254), Expect = 4.600e-19
Identity = 67/106 (63.21%), Postives = 75/106 (70.75%), Query Frame = 1 

		  

Query: 1   MASLLLGTPSMACHSV----SFSFSHSQSVAGV-SLSSPPTLSLSSSVSTSPALPLIYCG 60
           MASLLLG P MA HS     S SFS SQS+    SL S    SLS+S+S +PALP I+CG
Sbjct: 1   MASLLLGAP-MAAHSFALSPSLSFSKSQSLTHAPSLCSASASSLSTSLS-APALPFIHCG 60

Query: 61  RGDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 102
           RGD+KTAKGKRFNHSFGNARPK+KNKGRGPP+ P  P      K D
Sbjct: 61  RGDKKTAKGKRFNHSFGNARPKDKNKGRGPPRVPAPPLPPRKDKYD 104
[Close]
BLAST of Spo25369.1 vs. NCBI nr
Match: gi|657991903|ref|XP_008388201.1| (PREDICTED: 30S ribosomal protein S31, chloroplastic [Malus domestica])

HSP 1 Score: 102.1 bits (253), Expect = 6.000e-19
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 1 

		  

Query: 1  MASLLLGTPSMACHSVSFS----FSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGR 60
          MASL+LG P     S++FS    FSHS+++A VSL S  T+SLS S ++SP +P +YCGR
Sbjct: 1  MASLILGAPPAPPQSLAFSSRISFSHSETLA-VSLPSS-TVSLSLSTASSPPVPSVYCGR 60

Query: 61 GDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQ 99
          GD+KT +GKRFNHSFGNARP+NKNKGRGPP+ P+ P   P +
Sbjct: 61 GDKKTERGKRFNHSFGNARPRNKNKGRGPPRVPV-PAAPPKK 99
[Close]
BLAST of Spo25369.1 vs. NCBI nr
Match: gi|297823693|ref|XP_002879729.1| (plastid-specific ribosomal protein 4 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 101.7 bits (252), Expect = 7.800e-19
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 1 

		  

Query: 1  MASLLLGTP---SMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRG 60
          MASL+LG P   ++A  S   S SHS++ AGVSLS   T   S S S+S ++PL+YCGRG
Sbjct: 1  MASLILGAPPRVTVALSSSRLSSSHSET-AGVSLSCS-THQFSLSTSSSSSIPLVYCGRG 60

Query: 61 DRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFP 93
          DRKTAKGKRFNHSFGNARP+NKNKGRGP + P+ P
Sbjct: 61 DRKTAKGKRFNHSFGNARPRNKNKGRGPERVPVPP 93
[Close]
BLAST of Spo25369.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMU8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_048530 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.200e-47
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

		  

Query: 1   MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRK 60
           MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRK
Sbjct: 1   MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRK 60

Query: 61  TAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 102
           TAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED
Sbjct: 61  TAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 101
[Close]
BLAST of Spo25369.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FR34_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g023990 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.100e-35
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 1 

		  

Query: 1  MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSV-STSPALPLIYCGRGDR 60
          MASL+LGT SMA  + S SFS S SVAGVSLSSPPTLSLS+SV STSPALPLIYCGRGD+
Sbjct: 1  MASLILGTTSMASCAFSLSFSQSHSVAGVSLSSPPTLSLSTSVASTSPALPLIYCGRGDK 60

Query: 61 KTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQ 99
          KTAKGKRFNHSFGNARP+NKNKGRGPPKAPIFPK DPS+
Sbjct: 61 KTAKGKRFNHSFGNARPRNKNKGRGPPKAPIFPKEDPSE 99
[Close]
BLAST of Spo25369.1 vs. UniProtKB/TrEMBL
Match: D7LKT6_ARALL (Plastid-specific ribosomal protein 4 (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=PSRP4 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.500e-19
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 1 

		  

Query: 1  MASLLLGTP---SMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRG 60
          MASL+LG P   ++A  S   S SHS++ AGVSLS   T   S S S+S ++PL+YCGRG
Sbjct: 1  MASLILGAPPRVTVALSSSRLSSSHSET-AGVSLSCS-THQFSLSTSSSSSIPLVYCGRG 60

Query: 61 DRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFP 93
          DRKTAKGKRFNHSFGNARP+NKNKGRGP + P+ P
Sbjct: 61 DRKTAKGKRFNHSFGNARPRNKNKGRGPERVPVPP 93
[Close]
BLAST of Spo25369.1 vs. UniProtKB/TrEMBL
Match: A0A0A8LFY2_MALBA (Putative 30S ribosomal protein (Fragment) OS=Malus baccata GN=s31 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.100e-19
Identity = 60/102 (58.82%), Postives = 76/102 (74.51%), Query Frame = 1 

		  

Query: 1  MASLLLGTPSMACHSVSFS----FSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGR 60
          MASL+LG P     S++FS    FSHS+++A VSL S  T SLS S ++SP +P +YCGR
Sbjct: 1  MASLILGAPPAPPQSLAFSSRISFSHSETLA-VSLPSS-TXSLSLSTASSPPVPSVYCGR 60

Query: 61 GDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQ 99
          GD+KT +GKRFNHSFGNARP+NKNKGRGPP+ P+ P   P +
Sbjct: 61 GDKKTERGKRFNHSFGNARPRNKNKGRGPPRVPV-PAAPPKK 99
[Close]
BLAST of Spo25369.1 vs. UniProtKB/TrEMBL
Match: V4M817_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017376mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.600e-18
Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 1 

		  

Query: 1   MASLLLGTP-------SMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIY 60
           MASLLLG P       S++  S   S SHS+ ++GVSLS   T  LS S S+S ++PL+Y
Sbjct: 28  MASLLLGAPPRVTVALSLSTSSSRLSSSHSK-ISGVSLSCF-THQLSLSDSSSSSIPLVY 87

Query: 61  CGRGDRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFP 93
           CGRGDRKTAKGKRFNHSFGNARP+NKNKGRGP + P+ P
Sbjct: 88  CGRGDRKTAKGKRFNHSFGNARPRNKNKGRGPQRVPVPP 124
[Close]
BLAST of Spo25369.1 vs. ExPASy Swiss-Prot
Match: RR31_SPIOL (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea GN=RPS31 PE=1 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 5.600e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

		  

Query: 1   MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRK 60
           MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRK
Sbjct: 1   MASLLLGTPSMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRK 60

Query: 61  TAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 102
           TAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED
Sbjct: 61  TAKGKRFNHSFGNARPKNKNKGRGPPKAPIFPKGDPSQKED 101
[Close]
BLAST of Spo25369.1 vs. ExPASy Swiss-Prot
Match: RR31_ARATH (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana GN=RPS31 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.400e-20
Identity = 59/95 (62.11%), Postives = 72/95 (75.79%), Query Frame = 1 

		  

Query: 1  MASLLLGTP---SMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRG 60
          MASL+LG P   ++A  S   S SHS++ AGVSLS   T   S S S+S ++PL+YCGRG
Sbjct: 1  MASLILGAPPRVTVALPSSRLSSSHSET-AGVSLSCF-THQFSLSTSSSSSIPLVYCGRG 60

Query: 61 DRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFP 93
          DRKTAKGKRFNHSFGNARP+NK+KGRGP + P+ P
Sbjct: 61 DRKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPP 93
[Close]
BLAST of Spo25369.1 vs. TAIR (Arabidopsis)
Match: AT2G38140.1 (plastid-specific ribosomal protein 4)

HSP 1 Score: 98.2 bits (243), Expect = 3.100e-21
Identity = 59/95 (62.11%), Postives = 72/95 (75.79%), Query Frame = 1 

		  

Query: 1  MASLLLGTP---SMACHSVSFSFSHSQSVAGVSLSSPPTLSLSSSVSTSPALPLIYCGRG 60
          MASL+LG P   ++A  S   S SHS++ AGVSLS   T   S S S+S ++PL+YCGRG
Sbjct: 1  MASLILGAPPRVTVALPSSRLSSSHSET-AGVSLSCF-THQFSLSTSSSSSIPLVYCGRG 60

Query: 61 DRKTAKGKRFNHSFGNARPKNKNKGRGPPKAPIFP 93
          DRKTAKGKRFNHSFGNARP+NK+KGRGP + P+ P
Sbjct: 61 DRKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPP 93
The following BLAST results are available for this feature:
BLAST of Spo25369.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|114152868|sp|P47910.2|RR31_SPIOL8.9e-47100.RecName: Full=30S ribosomal pr... [more]
gi|731315088|ref|XP_010689852.1|1.0e-3484.8PREDICTED: 30S ribosomal prote... [more]
gi|848915539|ref|XP_012855500.1|4.6e-1963.2PREDICTED: 30S ribosomal prote... [more]
gi|657991903|ref|XP_008388201.1|6.0e-1958.8PREDICTED: 30S ribosomal prote... [more]
gi|297823693|ref|XP_002879729.1|7.8e-1963.1plastid-specific ribosomal pro... [more]
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BLAST of Spo25369.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RMU8_SPIOL6.2e-47100.Uncharacterized protein OS=Spi... [more]
A0A0J8FR34_BETVU7.1e-3584.8Uncharacterized protein OS=Bet... [more]
D7LKT6_ARALL5.5e-1963.1Plastid-specific ribosomal pro... [more]
A0A0A8LFY2_MALBA7.1e-1958.8Putative 30S ribosomal protein... [more]
V4M817_EUTSA1.6e-1861.6Uncharacterized protein OS=Eut... [more]
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BLAST of Spo25369.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RR31_SPIOL5.6e-49100.30S ribosomal protein S31, chl... [more]
RR31_ARATH5.4e-2062.130S ribosomal protein S31, chl... [more]
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BLAST of Spo25369.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G38140.13.1e-2162.1plastid-specific ribosomal pro... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34550FAMILY NOT NAMEDcoord: 30..92
score: 6.6
NoneNo IPR availablePANTHERPTHR34550:SF130S RIBOSOMAL PROTEIN S31, CHLOROPLASTICcoord: 30..92
score: 6.6
NoneNo IPR availablePFAMPF17067RPS31coord: 1..93
score: 5.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0046483 heterocycle metabolic process
biological_process GO:1901360 organic cyclic compound metabolic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0060003 copper ion export
biological_process GO:0008152 metabolic process
biological_process GO:0043043 peptide biosynthetic process
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0019464 glycine decarboxylation via glycine cleavage system
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
biological_process GO:0006457 protein folding
biological_process GO:0006725 cellular aromatic compound metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006364 rRNA processing
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009902 chloroplast relocation
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010207 photosystem II assembly
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0042793 plastid transcription
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0009637 response to blue light
biological_process GO:0010218 response to far red light
biological_process GO:0010114 response to red light
biological_process GO:0016117 carotenoid biosynthetic process
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005960 glycine cleavage complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005750 mitochondrial respiratory chain complex III
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009507 chloroplast
cellular_component GO:0009523 photosystem II
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0005840 ribosome
cellular_component GO:0044434 chloroplast part
cellular_component GO:0009533 chloroplast stromal thylakoid
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0003723 RNA binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004008 copper-exporting ATPase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0008047 enzyme activator activity
molecular_function GO:0003746 translation elongation factor activity
RNA-Seq Expression