Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGGCAAAGATGAAGATGTTAGACTCGGAGCTAACAAGTACGGGGAGAAGCAAGGGTTGGGTACGGTGGCGCAAGACAGAGACTACAAGGAGCCACCACCAGCGCCGCTGTTTGAGCCCGGAGAGCTGACGTCATGGTCATTTTACAGGGCCGGAATTGCGGAGTTTATTGCAACATTCTTGTTCCTTTACATCAGTATTTTGACGGTTATGGGGTACAGCCGTGCTGATAACAAGTGTAAAACTGTTGGTATTCAGGGTATTGCCTGGGCTTTTGGTGGAATGATCTTTGCCCTTGTTTACTGTACTGCTGGAATTTCTGGTAATTTTTTCCATCCTTTTTGTTTTTAGCTACTTAATTATTGCTTAATTTCTGTTTGTTTAGATGTATAATTAATTAATTAATTAATCATGAAGGAATTTGAAGAAAATGAAGTGGAATTTTGGGGGTAACGCTTTAAAAATGATTATTAGATGTACAATTGTGGAGAAATTTAAAGAAAAAGTCGTGGGGTTTTTGTATATATATTATGTTTTGGACAATTTTGGATGTGTTTTAAATGTTAGATTTATACGGAGTAGTTGATTCTGGATGTGTTTTTTGGGTATTGATTTTTTGTTTTGAGCACGTAGAGAGTATTACATGAATGACCACCCGAAAAACTTCAATCAACTGAGCTAATATGCTTCTCAGTACTGTTACCATAACTGGATTCAGCTTACTATTAGTAGGATCTAGTTTTAGGATTTTCATTTCAGTAACAAAATACAGAAAGTCTGCAATCAAATTTAACAATAGGAAGTACTCTTTTATAAATGTTGTTTTTGAAAACGGGTATGGATCTATGAGAAACCTAACTTTGTAAAATTGGATGATGATGATGTATTACAGGAGGTCACATTAACCCAGCAGTAACATTCGGATTGTTCTTGGCAAGGAAATTGTCGTTGACAAGAGCAGTGTTCTACATGATTATGCAATGTTTAGGTGCCATTTGTGGTGCTGGTGTGGTTAAGGGATTCCAACCCGGGCCCTACCAGGTCGGTGGTGGAGGATCTAACTATGTTCACCATGGTTACACCAAGGGATCAGGCCTTGGTGCTGAGATTGTTGGTACCTTCGTCCTTGTCTACACCGTCTTCTCTGCCACTGACGCCAAGAGAAGCGCTAGGGACTCTCATGTTCCTGTAAGTGCTAGCTAGTAACCAGTGTTTCTAATATCTTGTGATTAACTTCAATTCATGTCATTTATTTGTTAAATATGAACTTAAATTAATGGTATGATTCAATGATACAGATCTTGGCACCCCTCCCAATCGGGTTCGCTGTGTTCTTGGTTCACTTGGCCACCATCCCCATTACCGGCACCGGTATCAACCCTGCTAGGAGTCTTGGTACCGCTATCATCTACAACAAACAAATTAACAACTGGAACGACCACGTAAGTTTCTAACACCCCGTTTGTTCAAGTTCATGTAATTTGTGTATGAGCAAATCTAAGGGTGAAACGGTCTCACACCAACCTATTCAGGATACCCTTTTAGTATATGGTAAAAAGTCACCTTACCACATATGTATTGATAAGTAAAAGCACGCAAGTGTTAGTTACCTTAGACGGTAAAGTTTCTCAAAAAGTTAAACTTAAAACTTACGTCTAATAATAAAAAATCAATACGTAGCAACGTTTAGTCATTTATGAGCACTTTCAGAGTTTCGAGTCATGATAGTACGTTTTTAAAAAGGAGTGGTGGGAAATTCTTGTTGTTTCTTGAAGTGCATACTACTTAGGCCCATTTTAAAATGGTGTAACTGTAACATAAAGTCATAACTTGAAGCATCATCATTTATAAATTATAATTAATGATATAGAATGAGTAGGGATAAGGAATCTAACAAATTATGTATAGCAAAGAGATAAGGTAGTGATGCACATTAAAATAAAAAGCTTATTAAAATAGAGTTCGTATAAAGTAAAGGTAGGGTCCAATTACATCCTCTTTTTGTTCATATCATTGTCCTCCTACGATGCCCCATGTGGATTAGTTGTCAAACAAACACAGAATGGAATATCACTGATTTGGTGGAGATGATGCTGTCCTGAAGTTACTGTTTACCTACTATCCTAATTAAAGATTAAGCATTTGATTGTATAATTATGTCCTAATTTAATGAAATTCCTTGTTTTTCTTTTGGTACAGTGGATCTTCTGGGTGGGACCATTCATTGGAGCAGCATTGGCAGCTGTTTACCACACAGTGGTGATTAGGGCAATCCCTTTCAAATCCAAGTAATGGGTTTAAATAAGCTCATGGGTTTCATTCATGGGTGGATGTTGTTGTATGATTGGATCGTCTCATCAGCCCGACGACCCGTATTTGTGTTCTAAGGCTGTTTGATGGTGACTAGAAGAATCCCATGTGTGTTATTTTCTTTGTTTGTCATTTGTATTAAGTAAGTTATTTTGTAATTTTTTAAAATTTTCCTCGAAGAATCCTGAGAGGGTTGTGGCTTGTATTGGACTGGGTTGTGAAAATGTAAATTCTAATTATCAACTATGTAATTGTAATGGTCCCGTTCCGGGTATATTAAGTACTAGCCTTTTTTTTCTTGTATCTCATATTCTCATCTCACTGTTTGATGTCACTTGTTACATAATGGGCCAACAGCCATAGTCAAAAGGAAGTTATATTGCGTTCTACGCAGTAAGTTTCATATACTCCGTACTTGGCTTTTAATTTCACATGGCACAACCGCACAACTAGTAGTCTAGTACTAGTACGAAATTATACACTCTGTTGTGTGTCCCCAAAAACAATCATTGAGTACCTATGAGGATTTCAATGTATATGTATAAGACTATAAGTGAAATA ATGGAGGGCAAAGATGAAGATGTTAGACTCGGAGCTAACAAGTACGGGGAGAAGCAAGGGTTGGGTACGGTGGCGCAAGACAGAGACTACAAGGAGCCACCACCAGCGCCGCTGTTTGAGCCCGGAGAGCTGACGTCATGGTCATTTTACAGGGCCGGAATTGCGGAGTTTATTGCAACATTCTTGTTCCTTTACATCAGTATTTTGACGGTTATGGGGTACAGCCGTGCTGATAACAAGTGTAAAACTGTTGGTATTCAGGGTATTGCCTGGGCTTTTGGTGGAATGATCTTTGCCCTTGTTTACTGTACTGCTGGAATTTCTGGAGGTCACATTAACCCAGCAGTAACATTCGGATTGTTCTTGGCAAGGAAATTGTCGTTGACAAGAGCAGTGTTCTACATGATTATGCAATGTTTAGGTGCCATTTGTGGTGCTGGTGTGGTTAAGGGATTCCAACCCGGGCCCTACCAGGTCGGTGGTGGAGGATCTAACTATGTTCACCATGGTTACACCAAGGGATCAGGCCTTGGTGCTGAGATTGTTGGTACCTTCGTCCTTGTCTACACCGTCTTCTCTGCCACTGACGCCAAGAGAAGCGCTAGGGACTCTCATGTTCCTATCTTGGCACCCCTCCCAATCGGGTTCGCTGTGTTCTTGGTTCACTTGGCCACCATCCCCATTACCGGCACCGGTATCAACCCTGCTAGGAGTCTTGGTACCGCTATCATCTACAACAAACAAATTAACAACTGGAACGACCACTGGATCTTCTGGGTGGGACCATTCATTGGAGCAGCATTGGCAGCTGTTTACCACACAGTGGTGATTAGGGCAATCCCTTTCAAATCCAAGTAATGGGTTTAAATAAGCTCATGGGTTTCATTCATGGGTGGATGTTGTTGTATGATTGGATCGTCTCATCAGCCCGACGACCCGTATTTGTGTTCTAAGGCTGTTTGATGGTGACTAGAAGAATCCCATGTGTGTTATTTTCTTTGTTTGTCATTTGTATTAAGTAAGTTATTTTGTAATTTTTTAAAATTTTCCTCGAAGAATCCTGAGAGGGTTGTGGCTTGTATTGGACTGGGTTGTGAAAATGTAAATTCTAATTATCAACTATGTAATTGTAATGGTCCCGTTCCGGGTATATTAAGTACTAGCCTTTTTTTTCTTGTATCTCATATTCTCATCTCACTGTTTGATGTCACTTGTTACATAATGGGCCAACAGCCATAGTCAAAAGGAAGTTATATTGCGTTCTACGCAGTAAGTTTCATATACTCCGTACTTGGCTTTTAATTTCACATGGCACAACCGCACAACTAGTAGTCTAGTACTAGTACGAAATTATACACTCTGTTGTGTGTCCCCAAAAACAATCATTGAGTACCTATGAGGATTTCAATGTATATGTATAAGACTATAAGTGAAATA ATGGAGGGCAAAGATGAAGATGTTAGACTCGGAGCTAACAAGTACGGGGAGAAGCAAGGGTTGGGTACGGTGGCGCAAGACAGAGACTACAAGGAGCCACCACCAGCGCCGCTGTTTGAGCCCGGAGAGCTGACGTCATGGTCATTTTACAGGGCCGGAATTGCGGAGTTTATTGCAACATTCTTGTTCCTTTACATCAGTATTTTGACGGTTATGGGGTACAGCCGTGCTGATAACAAGTGTAAAACTGTTGGTATTCAGGGTATTGCCTGGGCTTTTGGTGGAATGATCTTTGCCCTTGTTTACTGTACTGCTGGAATTTCTGGAGGTCACATTAACCCAGCAGTAACATTCGGATTGTTCTTGGCAAGGAAATTGTCGTTGACAAGAGCAGTGTTCTACATGATTATGCAATGTTTAGGTGCCATTTGTGGTGCTGGTGTGGTTAAGGGATTCCAACCCGGGCCCTACCAGGTCGGTGGTGGAGGATCTAACTATGTTCACCATGGTTACACCAAGGGATCAGGCCTTGGTGCTGAGATTGTTGGTACCTTCGTCCTTGTCTACACCGTCTTCTCTGCCACTGACGCCAAGAGAAGCGCTAGGGACTCTCATGTTCCTATCTTGGCACCCCTCCCAATCGGGTTCGCTGTGTTCTTGGTTCACTTGGCCACCATCCCCATTACCGGCACCGGTATCAACCCTGCTAGGAGTCTTGGTACCGCTATCATCTACAACAAACAAATTAACAACTGGAACGACCACTGGATCTTCTGGGTGGGACCATTCATTGGAGCAGCATTGGCAGCTGTTTACCACACAGTGGTGATTAGGGCAATCCCTTTCAAATCCAAGTAA MEGKDEDVRLGANKYGEKQGLGTVAQDRDYKEPPPAPLFEPGELTSWSFYRAGIAEFIATFLFLYISILTVMGYSRADNKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPGPYQVGGGGSNYVHHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGTAIIYNKQINNWNDHWIFWVGPFIGAALAAVYHTVVIRAIPFKSK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25352.1 vs. NCBI nr
Match: gi|38532005|gb|AAR23268.1| (PIP1;2 [Spinacia oleracea]) HSP 1 Score: 579.3 bits (1492), Expect = 3.600e-162 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 1
BLAST of Spo25352.1 vs. NCBI nr
Match: gi|870867372|gb|KMT18241.1| (hypothetical protein BVRB_2g024080 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 545.4 bits (1404), Expect = 5.800e-152 Identity = 267/285 (93.68%), Postives = 273/285 (95.79%), Query Frame = 1
BLAST of Spo25352.1 vs. NCBI nr
Match: gi|733215449|ref|NP_001290008.1| (probable aquaporin PIP1-4 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 545.0 bits (1403), Expect = 7.600e-152 Identity = 266/285 (93.33%), Postives = 273/285 (95.79%), Query Frame = 1
BLAST of Spo25352.1 vs. NCBI nr
Match: gi|1402837|gb|AAB67870.1| (plasma membrane major intrinsic protein 3 [Beta vulgaris]) HSP 1 Score: 543.1 bits (1398), Expect = 2.900e-151 Identity = 266/285 (93.33%), Postives = 272/285 (95.44%), Query Frame = 1
BLAST of Spo25352.1 vs. NCBI nr
Match: gi|90992882|gb|ABE03629.1| (plasma membrane major intrinsic protein [Salicornia bigelovii]) HSP 1 Score: 542.3 bits (1396), Expect = 4.900e-151 Identity = 263/285 (92.28%), Postives = 274/285 (96.14%), Query Frame = 1
BLAST of Spo25352.1 vs. UniProtKB/TrEMBL
Match: Q6UDQ3_SPIOL (PIP1;2 OS=Spinacia oleracea GN=Pip1;2 PE=2 SV=1) HSP 1 Score: 579.3 bits (1492), Expect = 2.500e-162 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 1
BLAST of Spo25352.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FR46_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g024080 PE=3 SV=1) HSP 1 Score: 545.4 bits (1404), Expect = 4.000e-152 Identity = 267/285 (93.68%), Postives = 273/285 (95.79%), Query Frame = 1
BLAST of Spo25352.1 vs. UniProtKB/TrEMBL
Match: C7DYC4_BETVU (Plasma membrane intrinsic protein PIP1;1 OS=Beta vulgaris subsp. vulgaris PE=2 SV=1) HSP 1 Score: 545.0 bits (1403), Expect = 5.300e-152 Identity = 266/285 (93.33%), Postives = 273/285 (95.79%), Query Frame = 1
BLAST of Spo25352.1 vs. UniProtKB/TrEMBL
Match: Q39441_BETVU (Plasma membrane major intrinsic protein 3 OS=Beta vulgaris subsp. vulgaris PE=2 SV=1) HSP 1 Score: 543.1 bits (1398), Expect = 2.000e-151 Identity = 266/285 (93.33%), Postives = 272/285 (95.44%), Query Frame = 1
BLAST of Spo25352.1 vs. UniProtKB/TrEMBL
Match: Q1PCE6_SALBI (Plasma membrane major intrinsic protein OS=Salicornia bigelovii GN=PIP1 PE=2 SV=1) HSP 1 Score: 542.3 bits (1396), Expect = 3.400e-151 Identity = 263/285 (92.28%), Postives = 274/285 (96.14%), Query Frame = 1
BLAST of Spo25352.1 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1) HSP 1 Score: 505.0 bits (1299), Expect = 5.400e-142 Identity = 251/287 (87.46%), Postives = 268/287 (93.38%), Query Frame = 1
BLAST of Spo25352.1 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1) HSP 1 Score: 499.6 bits (1285), Expect = 2.300e-140 Identity = 247/286 (86.36%), Postives = 266/286 (93.01%), Query Frame = 1
BLAST of Spo25352.1 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2) HSP 1 Score: 496.1 bits (1276), Expect = 2.500e-139 Identity = 245/287 (85.37%), Postives = 263/287 (91.64%), Query Frame = 1
BLAST of Spo25352.1 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1) HSP 1 Score: 493.4 bits (1269), Expect = 1.600e-138 Identity = 242/289 (83.74%), Postives = 264/289 (91.35%), Query Frame = 1
BLAST of Spo25352.1 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1) HSP 1 Score: 492.3 bits (1266), Expect = 3.600e-138 Identity = 241/286 (84.27%), Postives = 265/286 (92.66%), Query Frame = 1
BLAST of Spo25352.1 vs. TAIR (Arabidopsis)
Match: AT4G00430.1 (plasma membrane intrinsic protein 1;4) HSP 1 Score: 505.0 bits (1299), Expect = 3.100e-143 Identity = 251/287 (87.46%), Postives = 268/287 (93.38%), Query Frame = 1
BLAST of Spo25352.1 vs. TAIR (Arabidopsis)
Match: AT1G01620.1 (plasma membrane intrinsic protein 1C) HSP 1 Score: 499.6 bits (1285), Expect = 1.300e-141 Identity = 247/286 (86.36%), Postives = 266/286 (93.01%), Query Frame = 1
BLAST of Spo25352.1 vs. TAIR (Arabidopsis)
Match: AT4G23400.1 (plasma membrane intrinsic protein 1;5) HSP 1 Score: 496.1 bits (1276), Expect = 1.400e-140 Identity = 245/287 (85.37%), Postives = 263/287 (91.64%), Query Frame = 1
BLAST of Spo25352.1 vs. TAIR (Arabidopsis)
Match: AT3G61430.1 (plasma membrane intrinsic protein 1A) HSP 1 Score: 491.5 bits (1264), Expect = 3.500e-139 Identity = 241/286 (84.27%), Postives = 266/286 (93.01%), Query Frame = 1
BLAST of Spo25352.1 vs. TAIR (Arabidopsis)
Match: AT2G45960.3 (plasma membrane intrinsic protein 1B) HSP 1 Score: 436.0 bits (1120), Expect = 1.700e-122 Identity = 216/256 (84.38%), Postives = 236/256 (92.19%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25352.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25352.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25352.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25352.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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