Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCGATTTAAATTACTAATTATTGTGGCTCAGTGGAAAGTAACGCTTCTATATGTAGGTAATTAATTATTAGTAGCTCATTGCATTAAAGTAAGAATCAAACAAAGAGAGAAATTAAAGAGAGGACTACGATGGTATTTGAGGTGAAGCAGGTGCTTCGTATGAAGGAAGGAACCGATGAAACCAGTTACGTAAAAACATCCTACATTCAGGTACGTGGTTTTATAGAAAAACGATCCCAAAACAAATTATTAGTGATAGACGTTTGTTCTAAAGTAGTCACAAACGACAATGCGATAAATAACGTATGTGCGATTCGATCTTAGAAGTATAAAGTGTTTGATAAATTAATTGTTAATTATTTATTGTGTAAAAATAATCATTTAAGACATACTCCGTAGACGTAAAATAATGTAATTAAGTTTACAACGGTTATAATTTTAGACAATATTAGGTTGGTTGCCATGCAAGCCGGCCACGTTTAACAATTATATGAAACATGCGTATTTGATTTTTTTTTTTCCAATAATTATTAAATGTAATCATAATCTCGGGTAACGTAGCCAACTTTTCTGTGTCATCTTTAAAAGGTCTTTATTAGACATTTGATTTTTTTTTTAATGACGCATTAGGAGATAACGTACACGAGTAATTTTCAGTGCATATTTTAGTACTTATATATATTTTTTGAAGGTTAATACTATATAAATTGTTATGGTTAATTTATGTATTTATAGAAAAATATTGCTGTTGTTGGTAAAATTTGACTATTTATTTTTTCAATTTATTTTTATTTTAAAGACATAATCAAACATCAATGCCATTGTAGATCTACGCATTTTGCAAAAAGTAACAAGTACCAAGAGAGGAATAAAGGGAGAAAATGAGTTACCTAACATTTATTCTCTTCGTTTTTGTTTCAATCTTCATATGTAATAGAGCGGAAAATGTTTGGTTGACCCTAAGGGTTAGCAACTTTATATCTTAAGGGTTAGCAACTTTCAATCTTCAATCTTTATATGTATCTTAAGGGTTAGCAACCCTTAAGATACATATAACATAAAATAATATATAAGTGTAATTAATTGGAGAGAGAAAGTGTTGTAAGGTGAGTTTCAATGCATTTGTAACCAATCATAACTTAATATTTAAAGGGTTACTAACCCTTAGGGTTACTCTATCATTGTCCTTTGATTTTCATGCAACAGAGGCAGGTGCTATCATTGACAAAATCCCTAAAAGAAAAAGCCATAATGGAAATATATTGCAAAGAACAACCAACAACCTTATGCATAGCCGACTTGGGTTGTTCCTCTGCTGAGCCTAACACCTTAGGGGTGGTCTCTGAACTCATAGATGCAATCGAAAAGGCTCGTCGAGAGATCGGAAATGGGCACCAAGAGTATCAAGTTTATTTAAATGATCTTCCATGGAATGATTTCAACACTATCTTTAGGTCATTGGGAAGCTTTGAAGATAACTTGAAGAAACAAGTTGGGAATAATTTTGGACATTGTTTTGTGAATGGTGTCCCTGGTTCATTCTATGGCAGGCTATTCCCCACAAAACATTTGCATTTTGTCCATTCTTCTTATAGCCTTATGTGGCTTTCTCAGGCAGTGGCGTATCCAGGATTTTGA TCGATTTAAATTACTAATTATTGTGGCTCAGTGGAAAGTAACGCTTCTATATGTAGGTAATTAATTATTAGTAGCTCATTGCATTAAAGTAAGAATCAAACAAAGAGAGAAATTAAAGAGAGGACTACGATGGTATTTGAGGTGAAGCAGGTGCTTCGTATGAAGGAAGGAACCGATGAAACCAGTTACGTAAAAACATCCTACATTCAGAGGCAGGTGCTATCATTGACAAAATCCCTAAAAGAAAAAGCCATAATGGAAATATATTGCAAAGAACAACCAACAACCTTATGCATAGCCGACTTGGGTTGTTCCTCTGCTGAGCCTAACACCTTAGGGGTGGTCTCTGAACTCATAGATGCAATCGAAAAGGCTCGTCGAGAGATCGGAAATGGGCACCAAGAGTATCAAGTTTATTTAAATGATCTTCCATGGAATGATTTCAACACTATCTTTAGGTCATTGGGAAGCTTTGAAGATAACTTGAAGAAACAAGTTGGGAATAATTTTGGACATTGTTTTGTGAATGGTGTCCCTGGTTCATTCTATGGCAGGCTATTCCCCACAAAACATTTGCATTTTGTCCATTCTTCTTATAGCCTTATGTGGCTTTCTCAGGCAGTGGCGTATCCAGGATTTTGA ATGGTATTTGAGGTGAAGCAGGTGCTTCGTATGAAGGAAGGAACCGATGAAACCAGTTACGTAAAAACATCCTACATTCAGAGGCAGGTGCTATCATTGACAAAATCCCTAAAAGAAAAAGCCATAATGGAAATATATTGCAAAGAACAACCAACAACCTTATGCATAGCCGACTTGGGTTGTTCCTCTGCTGAGCCTAACACCTTAGGGGTGGTCTCTGAACTCATAGATGCAATCGAAAAGGCTCGTCGAGAGATCGGAAATGGGCACCAAGAGTATCAAGTTTATTTAAATGATCTTCCATGGAATGATTTCAACACTATCTTTAGGTCATTGGGAAGCTTTGAAGATAACTTGAAGAAACAAGTTGGGAATAATTTTGGACATTGTTTTGTGAATGGTGTCCCTGGTTCATTCTATGGCAGGCTATTCCCCACAAAACATTTGCATTTTGTCCATTCTTCTTATAGCCTTATGTGGCTTTCTCAGGCAGTGGCGTATCCAGGATTTTGA MVFEVKQVLRMKEGTDETSYVKTSYIQRQVLSLTKSLKEKAIMEIYCKEQPTTLCIADLGCSSAEPNTLGVVSELIDAIEKARREIGNGHQEYQVYLNDLPWNDFNTIFRSLGSFEDNLKKQVGNNFGHCFVNGVPGSFYGRLFPTKHLHFVHSSYSLMWLSQAVAYPGF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25251.1 vs. NCBI nr
Match: gi|902217141|gb|KNA17621.1| (hypothetical protein SOVF_078430 [Spinacia oleracea]) HSP 1 Score: 335.9 bits (860), Expect = 4.200e-89 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1
BLAST of Spo25251.1 vs. NCBI nr
Match: gi|731335426|ref|XP_010678722.1| (PREDICTED: salicylate carboxymethyltransferase-like isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 272.3 bits (695), Expect = 5.600e-70 Identity = 130/162 (80.25%), Postives = 145/162 (89.51%), Query Frame = 1
BLAST of Spo25251.1 vs. NCBI nr
Match: gi|731335424|ref|XP_010678721.1| (PREDICTED: salicylate carboxymethyltransferase-like isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 266.5 bits (680), Expect = 3.100e-68 Identity = 130/166 (78.31%), Postives = 145/166 (87.35%), Query Frame = 1
BLAST of Spo25251.1 vs. NCBI nr
Match: gi|870863842|gb|KMT14989.1| (hypothetical protein BVRB_3g064940 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 241.9 bits (616), Expect = 8.200e-61 Identity = 113/163 (69.33%), Postives = 136/163 (83.44%), Query Frame = 1
BLAST of Spo25251.1 vs. NCBI nr
Match: gi|731325038|ref|XP_010673295.1| (PREDICTED: salicylate carboxymethyltransferase-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 241.9 bits (616), Expect = 8.200e-61 Identity = 113/163 (69.33%), Postives = 136/163 (83.44%), Query Frame = 1
BLAST of Spo25251.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RDN0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_078430 PE=4 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 2.900e-89 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1
BLAST of Spo25251.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CSG5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g064940 PE=4 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 5.700e-61 Identity = 113/163 (69.33%), Postives = 136/163 (83.44%), Query Frame = 1
BLAST of Spo25251.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CMM0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g064950 PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 2.400e-59 Identity = 113/163 (69.33%), Postives = 134/163 (82.21%), Query Frame = 1
BLAST of Spo25251.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FGK9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g064950 PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 2.400e-59 Identity = 113/163 (69.33%), Postives = 134/163 (82.21%), Query Frame = 1
BLAST of Spo25251.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CSP4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g064930 PE=4 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 5.300e-59 Identity = 112/163 (68.71%), Postives = 134/163 (82.21%), Query Frame = 1
BLAST of Spo25251.1 vs. ExPASy Swiss-Prot
Match: SAMT_CLABR (Salicylate carboxymethyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 5.500e-41 Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 1
BLAST of Spo25251.1 vs. ExPASy Swiss-Prot
Match: JMT_BRARP (Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 4.000e-31 Identity = 75/170 (44.12%), Postives = 104/170 (61.18%), Query Frame = 1
BLAST of Spo25251.1 vs. ExPASy Swiss-Prot
Match: JMT_ARATH (Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=3) HSP 1 Score: 129.8 bits (325), Expect = 2.800e-29 Identity = 76/167 (45.51%), Postives = 101/167 (60.48%), Query Frame = 1
BLAST of Spo25251.1 vs. ExPASy Swiss-Prot
Match: XMT1_COFAR (7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 4.800e-29 Identity = 69/165 (41.82%), Postives = 101/165 (61.21%), Query Frame = 1
BLAST of Spo25251.1 vs. ExPASy Swiss-Prot
Match: XMT1_COFCA (7-methylxanthosine synthase 1 OS=Coffea canephora GN=XMT1 PE=1 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 4.800e-29 Identity = 69/165 (41.82%), Postives = 101/165 (61.21%), Query Frame = 1
BLAST of Spo25251.1 vs. TAIR (Arabidopsis)
Match: AT1G19640.1 (jasmonic acid carboxyl methyltransferase) HSP 1 Score: 129.8 bits (325), Expect = 1.600e-30 Identity = 76/167 (45.51%), Postives = 101/167 (60.48%), Query Frame = 1
BLAST of Spo25251.1 vs. TAIR (Arabidopsis)
Match: AT3G21950.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) HSP 1 Score: 126.3 bits (316), Expect = 1.800e-29 Identity = 72/157 (45.86%), Postives = 96/157 (61.15%), Query Frame = 1
BLAST of Spo25251.1 vs. TAIR (Arabidopsis)
Match: AT5G38020.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) HSP 1 Score: 124.8 bits (312), Expect = 5.100e-29 Identity = 73/157 (46.50%), Postives = 96/157 (61.15%), Query Frame = 1
BLAST of Spo25251.1 vs. TAIR (Arabidopsis)
Match: AT4G36470.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) HSP 1 Score: 123.6 bits (309), Expect = 1.100e-28 Identity = 69/165 (41.82%), Postives = 102/165 (61.82%), Query Frame = 1
BLAST of Spo25251.1 vs. TAIR (Arabidopsis)
Match: AT2G14060.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein) HSP 1 Score: 119.4 bits (298), Expect = 2.200e-27 Identity = 67/154 (43.51%), Postives = 94/154 (61.04%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25251.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25251.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25251.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25251.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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