Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGGAAAATTCTTTTCCATGAAAACGTTTTACGCCCTACCAAACGAAGCCTAGGTGTAACGCATACAAAGTCCACTCGAAAATGTTCACACTTGAATTGAAGACCCATACCAAAAAAGAGTGGGCAGACATTCCCGCCCCACAAAATCAAACCCTTTATTTTACTAACTTTTTTTTTGTCTCTTTCTTCAAATCCCTTCCCCTTTCTTACTTTTGAAAAATCCTAGAGAGAGAAAGCTACTGAGTCAAAAATGGCGGATGGGAAGAAGAGAGAAGAAGCAGGTTCATCTTCAATTTCTGGGGTTGAACACAAATTTAAGAATGAAGAAGATGAAGCTGAAGAATCGACAGTTGATGGGTGTTTTGCTAAGTTTGTTCCTCCCCCTCTTGTTCCTCTCCAACACCATCTTGAAAAAGACAAGGTTTTTCCTTCTTTTTGGTTTCTGGGTACCAATTTCTTTGTCCAATTATGCTGATTTAAGAATTAAATACCTAATAATATGTTCTGGGTTTTCTGGGTATTTAACTAATTAATTAGACTCTGGCTTTTTTTTATTTTGATTTTCTGCAATTCGTTTTGCAATATGTTCAAGTGAATCGAAAATAAAACCCCATAATTGCTATTGCTAATGATGGAGTGTAAGAATTGTGTTGAATTTGGATTAAACTAGTGTGCAGCTGAATGTTAATGAAATAATTAAATAAATTTAGGAAGGGTTAAGGTTAATCCTATTGGTTGGGAGACATATGTTGAATATTCCGTCTAGGGTTTCAGTTGCTCTGTGTTTTCTATGCATATGTTGAGTTTACTTTGGTAAAATCGAGTACAAAACTGGAGAGTGATAGGGTTGGATTGTTTTCGTGCTACTTCAAAACTTGATGCCCTTGACTCCCTTGAGTGCACTGCTATTGTGTGAAAGAAGTACAATTTCGACAAGAACGTGATCTTTTGGGGGACAAGCTAAAATATGATATTTTAGGGGATTGATATAGTTATTCTGCTTAATGAATAAATTTGCTACTTCAATATTTCAATATTTGCCAATATTCCTACATATCTTCTAATTATTGCCAAGGTGTAAGTATATATAGTCTGTTAATCAACGCAATTCAGTGTTGTTTTTGTAGAGATTTCAGATGTTGGAATTGGTAGATTTAGTACTTTGTAACAAATGTTTTACATTCTAGTTATTTGCCCCATACATTTTTCGTAGGATTTATTTTCCAGTGTTACATTTCCAATGCGTTGAAGTCGTAGTCACATTGTCCCAGCCCCTCTTAATAAGACATGATTTGGCAAAGCAATCCTATATAATAGTTGTGTTATTTCTATCTGTTTCATTGAGGAAGTCGGAAATAGATTTCACTGGTAGAGTGCCATTTTTTTTGGCCCTTATTCTAGGTACATTATACTGTCTTCTATATTTTCTGGTTCAAATCTTGAAGAAGTGTTGAATTTACTTAATTGTTGTAGGATGATGAGAGCTTAAGGAGGTGGAAAGAGAAGCTACTAGGTCGTGTTGAAGGAGACTTAAATGGTTGGCCTTTGGATGCCTTTCTTTTGCCTTTTTCCATCAAATTTCTTATATTCTGAATATAAGTTGTTCTTTTTGCATATCTTTGTCAGGCCAAGTGGAACCTGAAGTTACATTTCACTCCATAGGAGTTATGTCCCATGACCTTGGAGAAAATAATACTCGTTTGCCTCTGGATGAAAGCCAAAGCAGCAAAGTTCTGTTTTCACTCAAAGAGGACTCTCAGTATCGTTTTAAGCTCGCATTCACTGTCAAGTACAATATTGTCTCTGGTCTCACCTACTCTAACACCGTATGGAGAGCAGGAGTTCAAGGTGAGTATTGCTGCAATGAGGTTAAAATGTAAAATCGTTCATTGAGATTTTTGTACATGTTATCTCTGAACTTCAGCTTTTAGTTGAGGTCATTGGGAGTTAAACTTTGCTGTCAGCAACACATGATTTTGAACAATGCTTTCTGATCCATATAGATGTTATTCTGGTTTGGCAACATTGGAATTGTTAAATCAACTTATTAGTTACTTTTAGTTATTTTGACTGTTTTATCAAAATGGGAAAGATTATCTTGTTCGGCTTGGCCAATTCACTTCATGCATTGTCTTCAGTCTTCACTTGTTCTCTGTTTTATTTTTATCAAAATTCAAAAGGATGTTTGTGCTTAACCAGCTAATTTGACCAAGTTCACTTCACGAGTCTCCATCAGATGTTTCACTTTCATCTTCGGTCGTTTTCTTCAACTAATATTTGCAGATCGTTACCTACGTAACTATAGCTAGTGTGCCCATTTTGGATAAACCAAAGATTTGTTGTACTGATGATTTGGTTAATTGTGCAAGAAGGAAGAACTTGGACTTGCATGCTTAAGATCCCGTTTTCTTTACTACCTACTCTCCTTCAGATTTGATTTCATAAATGTGTATTCTTCTACTGTTATCTCTAGTTGCGCATAACCTTTGCTATTGTAGTACAAAACTATTTTGGTGGCCTCTTCTGAGTGAAATAAAATGAATAATTACTGTACAAGAACATAATAGGAAGAGCAACATCAATGAGGAAGAATAGCTGATAAAATGTAAACTCTTTCATTCTTTCTTGGCATCAAATGTGTTTTCGATAAATCTTTTCCCCAAGTAAACTTGATGAAGTTCTATTCAATATGACCTATGTTTGAAGAATTTGATTAGATACATAATGATTTTGGTCTGGTGGTTTATCATGTCAGTATGCCTCATAGGCTCGTACTTTTCCTTCTCTTTTCAGGCTGTCATCATAAGTTGCGAGTACATGCACAATTGCCATGATAGTCCTAGTAGTTTTTTGTAGAACCATATCATCGTGGCTTCTCACTACTCAGTGTACTTTCCCGTTGTATTCATTTGCTGTTCCATCTGTTTCAGTGGATCAAAGTGAAGGAATGCTAGGCACCTTTGCTCCTCAACCGCTACCCTATATACACCTCCTAGATGAGGAGACTACCCCATCTGGTGCTCTAGCAAGAGGAGTTTACTCGGCAAAGCTCAGGGTAAGTTCCACTACATTGCCCTTCTTATCTCCATCATTTTGTCTTCTTTTCTTTTTATTGTGCACTAAGAGTTTCATTTATCGCTCCATCATAAGAGACAGTAGTTCAATACTTTGTGCAAGTTCAAATAAAACAGCAAGTATGTAAATACAATATGTAGGTAAAAGATGATCCTACAGACCCGCATAATTGGTGGTGGTCTGCCAATTTAATTTATACGTCGTCTTTCTTTTTTGTGCAAAATTAGTTAATACATATACATCAAACTAACAAACAACTAATCAAGGTGCTTGCAACCAATGGCCTGCAATATTCAAGTTGTATGTGTCGTTTTTTATATGAAACTGATTTAGGTCAAACACTCACGTTACAATTCTTAGAAGTAACTGCAACATCATTGTCAAATGTCAAGCTATGGGCCTTCTAAAACAAGGACAACGAATTAGATAAACGCAATGCTATGAAAAAAAAGGATTTAGAGATGAGCTTTCTTTCAGTACATTCATTCTTCCAGCATTTCCCCCTGATTCCATTTTGCCCTTGTTTGCAGTTCGTGGATGATGACAAGAAATGTCACATGGAGCTAAGTTACACATTTGAAATTACAAAGAGAAGTTAGTTCATTCTTCTTTGGGTCTCACTGCACATGATTTCTGTTACGTTTCTTTCTTCATCGTGTGTATAACAGGTATTTTTCAGAATGCTGCAATGGAGTCGTTGTAGACTTGTAGTTTCGTTGTTTAGGACAATACCTGGGTCAGGTGAATCTTAAACTGACAAATTGGGAATTATCAGCTCAAAATTTTCGATGAACTTTATGATTAATATAGTTTTACTAGATATTTACAAAGTAAATTCTCTTGATGCCATGTACATCTTACAAATCCCATATTACAAAAATAGAAGTAGA GGGAAAATTCTTTTCCATGAAAACGTTTTACGCCCTACCAAACGAAGCCTAGGTGTAACGCATACAAAGTCCACTCGAAAATGTTCACACTTGAATTGAAGACCCATACCAAAAAAGAGTGGGCAGACATTCCCGCCCCACAAAATCAAACCCTTTATTTTACTAACTTTTTTTTTGTCTCTTTCTTCAAATCCCTTCCCCTTTCTTACTTTTGAAAAATCCTAGAGAGAGAAAGCTACTGAGTCAAAAATGGCGGATGGGAAGAAGAGAGAAGAAGCAGGTTCATCTTCAATTTCTGGGGTTGAACACAAATTTAAGAATGAAGAAGATGAAGCTGAAGAATCGACAGTTGATGGGTGTTTTGCTAAGTTTGTTCCTCCCCCTCTTGTTCCTCTCCAACACCATCTTGAAAAAGACAAGGATGATGAGAGCTTAAGGAGGTGGAAAGAGAAGCTACTAGGTCGTGTTGAAGGAGACTTAAATGGCCAAGTGGAACCTGAAGTTACATTTCACTCCATAGGAGTTATGTCCCATGACCTTGGAGAAAATAATACTCGTTTGCCTCTGGATGAAAGCCAAAGCAGCAAAGTTCTGTTTTCACTCAAAGAGGACTCTCAGTATCGTTTTAAGCTCGCATTCACTGTCAAGTACAATATTGTCTCTGGTCTCACCTACTCTAACACCGTATGGAGAGCAGGAGTTCAAGTGGATCAAAGTGAAGGAATGCTAGGCACCTTTGCTCCTCAACCGCTACCCTATATACACCTCCTAGATGAGGAGACTACCCCATCTGGTGCTCTAGCAAGAGGAGTTTACTCGGCAAAGCTCAGGTTCGTGGATGATGACAAGAAATGTCACATGGAGCTAAGTTACACATTTGAAATTACAAAGAGAAGTTAGTTCATTCTTCTTTGGGTCTCACTGCACATGATTTCTGTTACGTTTCTTTCTTCATCGTGTGTATAACAGGTATTTTTCAGAATGCTGCAATGGAGTCGTTGTAGACTTGTAGTTTCGTTGTTTAGGACAATACCTGGGTCAGGTGAATCTTAAACTGACAAATTGGGAATTATCAGCTCAAAATTTTCGATGAACTTTATGATTAATATAGTTTTACTAGATATTTACAAAGTAAATTCTCTTGATGCCATGTACATCTTACAAATCCCATATTACAAAAATAGAAGTAGA ATGGCGGATGGGAAGAAGAGAGAAGAAGCAGGTTCATCTTCAATTTCTGGGGTTGAACACAAATTTAAGAATGAAGAAGATGAAGCTGAAGAATCGACAGTTGATGGGTGTTTTGCTAAGTTTGTTCCTCCCCCTCTTGTTCCTCTCCAACACCATCTTGAAAAAGACAAGGATGATGAGAGCTTAAGGAGGTGGAAAGAGAAGCTACTAGGTCGTGTTGAAGGAGACTTAAATGGCCAAGTGGAACCTGAAGTTACATTTCACTCCATAGGAGTTATGTCCCATGACCTTGGAGAAAATAATACTCGTTTGCCTCTGGATGAAAGCCAAAGCAGCAAAGTTCTGTTTTCACTCAAAGAGGACTCTCAGTATCGTTTTAAGCTCGCATTCACTGTCAAGTACAATATTGTCTCTGGTCTCACCTACTCTAACACCGTATGGAGAGCAGGAGTTCAAGTGGATCAAAGTGAAGGAATGCTAGGCACCTTTGCTCCTCAACCGCTACCCTATATACACCTCCTAGATGAGGAGACTACCCCATCTGGTGCTCTAGCAAGAGGAGTTTACTCGGCAAAGCTCAGGTTCGTGGATGATGACAAGAAATGTCACATGGAGCTAAGTTACACATTTGAAATTACAAAGAGAAGTTAG MADGKKREEAGSSSISGVEHKFKNEEDEAEESTVDGCFAKFVPPPLVPLQHHLEKDKDDESLRRWKEKLLGRVEGDLNGQVEPEVTFHSIGVMSHDLGENNTRLPLDESQSSKVLFSLKEDSQYRFKLAFTVKYNIVSGLTYSNTVWRAGVQVDQSEGMLGTFAPQPLPYIHLLDEETTPSGALARGVYSAKLRFVDDDKKCHMELSYTFEITKRS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo25175.1 vs. NCBI nr
Match: gi|902190945|gb|KNA11732.1| (hypothetical protein SOVF_132410 [Spinacia oleracea]) HSP 1 Score: 438.7 bits (1127), Expect = 5.800e-120 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
BLAST of Spo25175.1 vs. NCBI nr
Match: gi|731346833|ref|XP_010684662.1| (PREDICTED: rho GDP-dissociation inhibitor 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 345.5 bits (885), Expect = 6.700e-92 Identity = 174/218 (79.82%), Postives = 189/218 (86.70%), Query Frame = 1
BLAST of Spo25175.1 vs. NCBI nr
Match: gi|720020459|ref|XP_010262409.1| (PREDICTED: rho GDP-dissociation inhibitor 1-like [Nelumbo nucifera]) HSP 1 Score: 288.9 bits (738), Expect = 7.400e-75 Identity = 144/215 (66.98%), Postives = 169/215 (78.60%), Query Frame = 1
BLAST of Spo25175.1 vs. NCBI nr
Match: gi|720028725|ref|XP_010264999.1| (PREDICTED: rho GDP-dissociation inhibitor 1-like [Nelumbo nucifera]) HSP 1 Score: 280.8 bits (717), Expect = 2.000e-72 Identity = 137/213 (64.32%), Postives = 167/213 (78.40%), Query Frame = 1
BLAST of Spo25175.1 vs. NCBI nr
Match: gi|590715496|ref|XP_007050212.1| (Immunoglobulin E-set superfamily protein isoform 1 [Theobroma cacao]) HSP 1 Score: 278.9 bits (712), Expect = 7.700e-72 Identity = 133/195 (68.21%), Postives = 164/195 (84.10%), Query Frame = 1
BLAST of Spo25175.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWT6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_132410 PE=4 SV=1) HSP 1 Score: 438.7 bits (1127), Expect = 4.000e-120 Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1
BLAST of Spo25175.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C0P9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g165470 PE=4 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 4.600e-92 Identity = 174/218 (79.82%), Postives = 189/218 (86.70%), Query Frame = 1
BLAST of Spo25175.1 vs. UniProtKB/TrEMBL
Match: A0A061DNI0_THECC (Immunoglobulin E-set superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_003956 PE=4 SV=1) HSP 1 Score: 278.9 bits (712), Expect = 5.300e-72 Identity = 133/195 (68.21%), Postives = 164/195 (84.10%), Query Frame = 1
BLAST of Spo25175.1 vs. UniProtKB/TrEMBL
Match: A0A067JUJ6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17651 PE=4 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 1.700e-70 Identity = 136/220 (61.82%), Postives = 169/220 (76.82%), Query Frame = 1
BLAST of Spo25175.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HP47_SOLCH (Putative rho GDP-dissociation inhibitor 1-like OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 2.200e-70 Identity = 137/220 (62.27%), Postives = 169/220 (76.82%), Query Frame = 1
BLAST of Spo25175.1 vs. ExPASy Swiss-Prot
Match: GDIR_ARATH (Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 7.500e-43 Identity = 93/192 (48.44%), Postives = 132/192 (68.75%), Query Frame = 1
BLAST of Spo25175.1 vs. ExPASy Swiss-Prot
Match: GDIR1_HUMAN (Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3) HSP 1 Score: 119.4 bits (298), Expect = 4.900e-26 Identity = 74/192 (38.54%), Postives = 96/192 (50.00%), Query Frame = 1
BLAST of Spo25175.1 vs. ExPASy Swiss-Prot
Match: GDIR1_MACFA (Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 4.900e-26 Identity = 74/192 (38.54%), Postives = 96/192 (50.00%), Query Frame = 1
BLAST of Spo25175.1 vs. ExPASy Swiss-Prot
Match: GDIR1_MOUSE (Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1 SV=3) HSP 1 Score: 118.2 bits (295), Expect = 1.100e-25 Identity = 72/192 (37.50%), Postives = 96/192 (50.00%), Query Frame = 1
BLAST of Spo25175.1 vs. ExPASy Swiss-Prot
Match: GDIR1_RAT (Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia PE=1 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.100e-25 Identity = 72/192 (37.50%), Postives = 96/192 (50.00%), Query Frame = 1
BLAST of Spo25175.1 vs. TAIR (Arabidopsis)
Match: AT3G07880.1 (Immunoglobulin E-set superfamily protein) HSP 1 Score: 175.3 bits (443), Expect = 4.200e-44 Identity = 93/192 (48.44%), Postives = 132/192 (68.75%), Query Frame = 1
BLAST of Spo25175.1 vs. TAIR (Arabidopsis)
Match: AT1G62450.1 (Immunoglobulin E-set superfamily protein) HSP 1 Score: 168.3 bits (425), Expect = 5.100e-42 Identity = 94/215 (43.72%), Postives = 130/215 (60.47%), Query Frame = 1
BLAST of Spo25175.1 vs. TAIR (Arabidopsis)
Match: AT1G12070.1 (Immunoglobulin E-set superfamily protein) HSP 1 Score: 165.2 bits (417), Expect = 4.400e-41 Identity = 90/192 (46.88%), Postives = 122/192 (63.54%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo25175.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo25175.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo25175.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo25175.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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