Spo24966 (gene)

Overview
NameSpo24966
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01128 : 183698 .. 183937 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATCTGGAAAAAGAAAGAAAGAAAGATGATGCTGGTGTCTGTAATGGCGGAGATGCTGGAGGAGTACACGGTCGTGCTAGCACGAATATTGGAACACGTGTTTAATGAAGCGCCTTTACCACGAAGGATTCGGTTTTTGATACTTAGGAATCTTCCTTTTGTTTCGTCATTACCTCTTAACCCTTCTCTTCTCCCTCCTCCTCCTCCTGCTTCTGCTCGTTCTTCTTATCATTGA

mRNA sequence

ATGGTAATCTGGAAAAAGAAAGAAAGAAAGATGATGCTGGTGTCTGTAATGGCGGAGATGCTGGAGGAGTACACGGTCGTGCTAGCACGAATATTGGAACACGTGTTTAATGAAGCGCCTTTACCACGAAGGATTCGGTTTTTGATACTTAGGAATCTTCCTTTTGTTTCGTCATTACCTCTTAACCCTTCTCTTCTCCCTCCTCCTCCTCCTGCTTCTGCTCGTTCTTCTTATCATTGA

Coding sequence (CDS)

ATGGTAATCTGGAAAAAGAAAGAAAGAAAGATGATGCTGGTGTCTGTAATGGCGGAGATGCTGGAGGAGTACACGGTCGTGCTAGCACGAATATTGGAACACGTGTTTAATGAAGCGCCTTTACCACGAAGGATTCGGTTTTTGATACTTAGGAATCTTCCTTTTGTTTCGTCATTACCTCTTAACCCTTCTCTTCTCCCTCCTCCTCCTCCTGCTTCTGCTCGTTCTTCTTATCATTGA

Protein sequence

MVIWKKKERKMMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPPPASARSSYH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24966.1Spo24966.1mRNA


Homology
[Close]
BLAST of Spo24966.1 vs. NCBI nr
Match: gi|902190200|gb|KNA11558.1| (hypothetical protein SOVF_133760 [Spinacia oleracea])

HSP 1 Score: 131.0 bits (328), Expect = 9.400e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 11 MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPP 70
          MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPP
Sbjct: 1  MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPP 60

Query: 71 PASARSSYH 80
          PASARSSYH
Sbjct: 61 PASARSSYH 69
[Close]
BLAST of Spo24966.1 vs. NCBI nr
Match: gi|731365931|ref|XP_010694789.1| (PREDICTED: uncharacterized protein LOC104907546 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 100.1 bits (248), Expect = 1.800e-18
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1 

		  

Query: 11 MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPP 70
          MMLVSV+AEMLEEYTVVL R+LEH+FNE PLPRRIRFLILR+LPF +SLPLNPSLLPPPP
Sbjct: 1  MMLVSVVAEMLEEYTVVLTRVLEHLFNEVPLPRRIRFLILRHLPF-ASLPLNPSLLPPPP 60

Query: 71 PASARSSYH 80
            ++  S H
Sbjct: 61 HHASAPSLH 68
[Close]
BLAST of Spo24966.1 vs. NCBI nr
Match: gi|764641498|ref|XP_011470870.1| (PREDICTED: uncharacterized protein LOC105353441 [Fragaria vesca subsp. vesca])

HSP 1 Score: 78.6 bits (192), Expect = 5.600e-12
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = 1 

		  

Query: 11 MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPP 70
          M+LV+++AEM+EEYTV+LARILEH+F  AP PRR+RFLILRNLPFVS+ PL    LPP P
Sbjct: 1  MILVAIVAEMMEEYTVLLARILEHMFQSAPFPRRVRFLILRNLPFVSTYPLP---LPPHP 60

Query: 71 PASARSS 78
             A ++
Sbjct: 61 LLGATAA 64
[Close]
BLAST of Spo24966.1 vs. NCBI nr
Match: gi|645299746|ref|XP_008245852.1| (PREDICTED: uncharacterized protein LOC103344009 [Prunus mume])

HSP 1 Score: 77.4 bits (189), Expect = 1.200e-11
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1 

		  

Query: 11 MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPP 70
          M+LV+ +AE++EEYT +LAR+LEH+F+ AP PRR+RFLILR+LPFVSS P     LPPPP
Sbjct: 1  MILVAGLAELMEEYTFLLARVLEHLFHSAPFPRRVRFLILRSLPFVSSYP-----LPPPP 56

Query: 71 P 72
          P
Sbjct: 61 P 56
[Close]
BLAST of Spo24966.1 vs. NCBI nr
Match: gi|947061786|gb|KRH11047.1| (hypothetical protein GLYMA_15G084900 [Glycine max])

HSP 1 Score: 77.0 bits (188), Expect = 1.600e-11
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = 1 

		  

Query: 9   RKMMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPP 68
           R+M+LV+++AE+LEEYT +LAR+LE VF  AP+PRR+RFLILR LPFVSS P   ++LPP
Sbjct: 63  REMILVAIVAEVLEEYTALLARVLEQVFRSAPVPRRVRFLILRALPFVSSRP--RTILPP 122

Query: 69  PPPA 73
           P P+
Sbjct: 123 PTPS 124
[Close]
BLAST of Spo24966.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXW6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133760 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.600e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

		  

Query: 11 MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPP 70
          MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPP
Sbjct: 1  MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPP 60

Query: 71 PASARSSYH 80
          PASARSSYH
Sbjct: 61 PASARSSYH 69
[Close]
BLAST of Spo24966.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B9Y9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g095690 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.200e-18
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 1 

		  

Query: 11 MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPP 70
          MMLVSV+AEMLEEYTVVL R+LEH+FNE PLPRRIRFLILR+LPF +SLPLNPSLLPPPP
Sbjct: 1  MMLVSVVAEMLEEYTVVLTRVLEHLFNEVPLPRRIRFLILRHLPF-ASLPLNPSLLPPPP 60

Query: 71 PASARSSYH 80
            ++  S H
Sbjct: 61 HHASAPSLH 68
[Close]
BLAST of Spo24966.1 vs. UniProtKB/TrEMBL
Match: A0A0B2RA54_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_040495 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.100e-11
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = 1 

		  

Query: 9   RKMMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPP 68
           R+M+LV+++AE+LEEYT +LAR+LE VF  AP+PRR+RFLILR LPFVSS P   ++LPP
Sbjct: 48  REMILVAIVAEVLEEYTALLARVLEQVFRSAPVPRRVRFLILRALPFVSSRP--RTILPP 107

Query: 69  PPPA 73
           P P+
Sbjct: 108 PTPS 109
[Close]
BLAST of Spo24966.1 vs. UniProtKB/TrEMBL
Match: A0A0R0FYU7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G084900 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.100e-11
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = 1 

		  

Query: 9   RKMMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPP 68
           R+M+LV+++AE+LEEYT +LAR+LE VF  AP+PRR+RFLILR LPFVSS P   ++LPP
Sbjct: 63  REMILVAIVAEVLEEYTALLARVLEQVFRSAPVPRRVRFLILRALPFVSSRP--RTILPP 122

Query: 69  PPPA 73
           P P+
Sbjct: 123 PTPS 124
[Close]
BLAST of Spo24966.1 vs. UniProtKB/TrEMBL
Match: I1MEU6_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.100e-11
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = 1 

		  

Query: 9   RKMMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPP 68
           R+M+LV+++AE+LEEYT +LAR+LE VF  AP+PRR+RFLILR LPFVSS P   ++LPP
Sbjct: 48  REMILVAIVAEVLEEYTALLARVLEQVFRSAPVPRRVRFLILRALPFVSSRP--RTILPP 107

Query: 69  PPPA 73
           P P+
Sbjct: 108 PTPS 109
[Close]
BLAST of Spo24966.1 vs. TAIR (Arabidopsis)
Match: AT1G33055.1 (unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 5.300e-13
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1 

		  

Query: 11 MMLVSVMAEMLEEYTVVLARILEHVFNEAPLPRRIRFLILRNLPFVSSLPLNPSLLPPPP 70
          M+LV+++AEM++EYTVVLA ++EH+F++AP PRRIR  IL +LPF SS    P LLP PP
Sbjct: 1  MLLVTLIAEMMKEYTVVLAGVVEHLFSQAPFPRRIRLHILYSLPFHSSNTSLPLLLPSPP 60

Query: 71 PASARS 77
          P S  S
Sbjct: 61 PYSRSS 66
The following BLAST results are available for this feature:
BLAST of Spo24966.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902190200|gb|KNA11558.1|9.4e-28100.hypothetical protein SOVF_1337... [more]
gi|731365931|ref|XP_010694789.1|1.8e-1878.2PREDICTED: uncharacterized pro... [more]
gi|764641498|ref|XP_011470870.1|5.6e-1264.1PREDICTED: uncharacterized pro... [more]
gi|645299746|ref|XP_008245852.1|1.2e-1165.5PREDICTED: uncharacterized pro... [more]
gi|947061786|gb|KRH11047.1|1.6e-1164.0hypothetical protein GLYMA_15G... [more]
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BLAST of Spo24966.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QXW6_SPIOL6.6e-28100.Uncharacterized protein OS=Spi... [more]
A0A0J8B9Y9_BETVU1.2e-1878.2Uncharacterized protein OS=Bet... [more]
A0A0B2RA54_GLYSO1.1e-1164.0Uncharacterized protein OS=Gly... [more]
A0A0R0FYU7_SOYBN1.1e-1164.0Uncharacterized protein OS=Gly... [more]
I1MEU6_SOYBN1.1e-1164.0Uncharacterized protein OS=Gly... [more]
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BLAST of Spo24966.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24966.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G33055.15.3e-1359.0unknown protein[more]
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010162 seed dormancy process
biological_process GO:0006457 protein folding
cellular_component GO:0009507 chloroplast
molecular_function GO:0005515 protein binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo104950.68Barchart | Table
Spo103600.67Barchart | Table
Spo081690.66Barchart | Table
Spo173380.66Barchart | Table
Spo041220.65Barchart | Table
Spo132020.65Barchart | Table