Spo24923 (gene) | SpinachBase

Overview


Name	Spo24923
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Double-stranded RNA-binding protein 4 (dsRNA-binding protein 4)
Location	chr1 : 30079944 .. 30088875 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCTTGGGCTTTGCTTTTCGTTCTGTTTTATTGTTGTTGCTTTTTCCTTTCTAGTTTGTAATATTTTCCTTCTTGTTGGGCCTGATCTTCGTTTCCACAAAAAAAAAAAAAAACAAAATCATGTGACCAAATTTTTCATGGGACTTGGGGTGACATTTATAATCGTTGATGCTTAAATTGCGACAAACATTTCTCAATAACACTCTATTCACTAACTCGCAACTTTTCGTCTTCGAAAGTGTGAAAATCGATTCAATTTCTTCCATAAATTCAACAATTTCCCCTTACTTCCTTGTAAACCCTAGCACTATTTCCACTAAATTTCAGTTGCACCCCATTTCTATGGATGAAGAAGCTGGTTCGCTGCCGAGCTCACTACTACTGCTACCCCAGCAACCGGAACAACCTCAAAGTAAGTTTATCATCTCTCCTTCCGTTTATGTTTCTGAATTTGTTTTATTTCTTTAAATTTCAGCTTCGGTGATTTCTATTGATGGCTAAAAGCGGAAGAACTTTTAATTTCATAGTGTTTGTTTTGGAACTGTGGTTGTGATTGGAATTTGTTTAACTTCAATCTATTTCCACTGATTTAGTAATTTCTATGATTGTATAATGATTGATGAAGTTGAATAAGATATGGGTTTATAGGGTTAGTGGGTAATTGTTGAAATAGCAGCTAGAAATTAGGATGAATAAGTAGGATAAGTTCTTGGAGTAGTAAAGTCTGAAACTTGAAGAAAGGAAATTGGGGAGGAGTGGTTCTTTACTGATGTAATGTTATATGGGCGAGCCTGAGTCATATGTCATGTTGATGGCGATGTCGGCTGCATGAAACAATCCGGTGGTCAAACTGAGCTGAGTCTAGATTTGGTTATTTACTGATGTCTCATTTAGGCCATTTTCATAAATATGGTATTTTTGTTCCTGAGACAATGGAGAGAAGTGAAGAACATAGGCTTCATGTAGCCAAACATTGTTATTTGGGGACATTATGTGTTTATTGGAATCGGACAATTCTTAGGTGATTTCTAGAGGCAGTGTTCTAGCTGCTGTGTTGCACTATGACTGTGCAGTTTTCACCTTAAAACAAGAGTTCTAGGGAATAGTGAGTATATGTTAAGGTAAGGTCTGATAAGTACTGCTTCAGATAAGTTCCAAGAAGGTGCATCAGTTATGTCTGATTAGTTCAAATAAGCATATCTCAAAGTAGCTTTTGGGGCCTTTTTCACTTATTTTCATGAATTATATGAGAAGCTTTCTGGATATTCTTGCTATAATTTACCAGTAATATGTGCTGCTTGGATGCTGAAGCAGTGCTGAACACATGGTCTGCATAAAGTATTCAGTGTCTCTTTTTTATATAAAAAAAAGAAATGGAACTGTGGAATGGGTCACCGATACCAGTTATTCCATATCATGCCTTAGGAATATATTTTAGGTAGTGGGAAAATTGGAGACGTGAAGAATCCTCGATGAGATGAGGAAGTCTTATCTGTGGTTTGACATCTGACTGGAGACTCTGGAGTCTGGACACCTTATGGATAGTTAAGCTACTGTTGTATGTCAAAAGTTGTGGTGCTAGTCTCTTAGAGAGTATAGAAGAAGTTCAACCTAGAGTAGTTGGTGGGTTTGGAAAGCATCCGTCTGTTTATGTTCAACCTGGAGTGGTTGACGGGTTATTTTGGAAAGTATCCATCCGTTTATGATTGCTAGAAGCCTAGAAATGTAGATTAATTTGTAGCTTTCCCGTACAAGGCCTGCTGGTATAAAAAAAGGAAAATCTATTTCTCACATTTTAGGTTGGCTTTTAGATATTGTATGGATGATTACATCTCCCAGAGTTTCTGTTAAGTAGTGCCAAGTGCAGCATTATGACGTAATTTAGTCCGTGGAAAATTTGTGGTTATAGGGTTTTGTTCCTTTTGTTCTCATAAACCTTCACACTCATCCTGATGAAAATTTGTGGTTATAGAGTTTTGTTCCTTTTGTTCTCATAAACCTTCACACTCATCCTGATGAGCTCACTGATGATAGTTAGAGAACATATTGTATGTCTTTGTGAAAAATAAGTGCTAGTGGAGATGTAAGATGTAATTCCTGTGATCGAACCTGTCTTCATGGAGTTGTTTTGGTTCAATTCTTGTTTACTGTTGTTGATTAACGATTATGTACTGCAATCATATTGATCATACACACTTATTGGCTCAGTTTCTTCACTCATTGGTTAATCTGAAATTCAGAATCTTGTAATAAGAAACTGCAGCTAATTATATATGAAGTTGTTTGAGATTTGTATGTAAATGGGTGGTTCTCTCTAATTTTGCAACGCAGGAACTTTGTTATGTACGAAGAATGTATAAAGAAAGTTGTTTTTTTTTCTATATTTTCCAAAGCACATGCAATGCAACTAATTAGGCCTAGAGAACTAAATTAAATAGAATACTCATTTTATCAGTTTCTTTTATCCAATCTTTTTCATAAGCTAAAGATTGGCGCAAAGAAGGGGGAAAACCAAGGAAGCAAAGAAAGCTAATTATAGATGAAAGTAGGGAGGGGAACTCAGTGAAGATTTTGGTGTGGGAGATTGTGGTGATGGTGGGAATTTGGTGACGAAAAGGAGTGCTAATGTGACCGCTAGCATGTAGATTTGTCCAACTCGTGCAACAACAAATATGAGGGATAATGATAATGGACTATCAAGTGCTACTTGAATTATGAGTTTCCCTTGATAGAATATGTAGTTAATCACATAGTATAGAAGTGTGTTAGTTCTCTCACTATTTTCGAATGGGTGTTCCGGAAATAAAGACCTAATAGAAAGTTGCAACATCTAGCTGGTTGCCCTTTTTCCTTTTTAAGCATTTGGTTAATGTCACCCAACTTTTTGATTCCGTAACAAGGATAAGAAAGAATGAGTTGTTATTGATATGATTAATTACTTTGTTTAAATAACCATGATCTAGAGGCTTAAAATTTTATGTTAAAATAAGCTCCAATGCATAAACGTGAAATTAATCAGTTTTCTTCCTCTGGTTTGTAACAACTAACATGGTGTTTGAACAAGCCAGATGCAAGGAATGTGTGATTGATAAAAGTTTATGCTAAACTTAGGGGTTGTTTCGTTGACATCTGAAAATGGGGGAAGTTGAAATCATGTGAATTTATAGATTGCGTAGTGGTTTGATTGACATAAAAAAGTAAAAATGGGGAAAATTTGGAATTCATGGGAAGTTAAAATTCCTACAAAAGTACAAAACATGGGAAGTAAATTACCCAACCCCGTGGTCAATCAAAATTCATGAGAATTTCTAATTCTCATGTTGTCAACCAACAACTTAAGGTAGTGTTTGGTAACTTGATTTCATTTGAAATCCTAGAATTCAAATATGGAATTTGAAATGCTAAACTTGAATTCCAAATCAAGTGTTTGGCAAACACCAATAATTTCAATTCGATAATTTCAAATCCACCATGATGTTTGGTAAACAAGTTTTATTTCCATTTATCATAAAAAAAAATTGTACAATAGCTTCCTTTTTTTTTTTTGAATAATACGAAATGTAGTATACACGTATAATAATGCTTACATCTAATTAACCTTGAAGTCCAAAGTTCTAAGTTCCAGTAAATAAAAGAAAAAGAACAAAAAAAGAAAAGAAAAGAGAGAAGAGAGAGAAAGTGGTGTACAAACATCAGGGGAAATCGATCATGATTAATATTTTCTTCGATTGAAAGTGAACGACGATATCAAGATGCAATTGGTACTTAAATTTAATTATTAAAGTTACCAATTGAAGCTTTCTACATACAAAAGGTAATGAACTGAAACATCAGAATTCAAGATCTCATTTTGATTAGATGAATAAAATAGAAATAATCTAGCAAATCATAATAATGGCGGCAATTTTTCTTGGCGGAGGAATGGAAAATTTTTCTAACGCCGGCGACGGAGTGGGGAAAAGTCCTTGAATTTCACGGTGATAGCAACAAAGTAGATGGTTAGAGGTGGGCGTCGCAGTCGTGAAGGTGGAGTCACCTAGGCAGTTGTTATGCAGGTGGATGAGGGTGGTTATTGAGGTGGTCGATGTGAAGGTGGCTGTGGAGCTGGTCGGTGTGAAGGAGGCGGTTGGCTACAAAAGAAAAAACATAGATGGAGTGGTGGTTGAGGGCCTGTGAGGCGGTGTGGGTTTGGGAGGAGAGAGAAAATGAGTCGTAAAGAAAATTGGGTATGGTGGAGACTCGGACTCAGGAGGGAGAGAAGGGTGTGAGAGCCACGAGACTTGCATCATGTGGAATGGAAATGACAGTATTGGAGATGGAATTTCAAATTCTTAAAAATAGACTTATTCTTTTAATAGTTGGATTTGGCCAAATTCCAAGTGTTGCCAAACAAGTGAATTGGGTCAATTCCAGAATTTCAAATGAAATTCAGGTTTCCAAACAGGCCATAAGGAAATTCCTAGGAATTTAACAAATTTCCCTTGAATTACAACTTCATGTGGGAATTAAATTCCCATGTCAACCAAACAAGCCCTTAATCATACCTTTTTAAGACAACAAGATACAAAAAGCTTAGAGGTTGTTCGGTACCTTAATTAAAAAAAATGTTGCTATTAGATCATTACTCGAAGTGCAAATGTAAACTTGTTGATCTAATAGCAACATTTTTTTTAATTCAATCAACAATCAACCGAAAGTATCAAAGTTATGTTCTACAGTAATATCATTTCTATTCAGCAACAATTTGATTCAATTAGTGAATTTGCAATTCCTTTGGTTCTCATTTAATTCAACAATATGTTCCTAAAAAGATAGATCCAGTAATGTCTTCCTCAAACAATAAATCCAATATTCTCTTCCAACAAAAAAGTCCAATCTCTTCCTAAAAAAAAATCCAATAATCTTCATCTTTCATTATCAATTATGGGTTTGAGGTTTCCCCTCATTTACATCCATGGAGTTTGTAACCCCATCAACCATTGGAAGTTCCCAATTCAAACACAACATTTCTTTCTCATGTTTACAATTTGACCATGGCCAAGCAATTATCATACCCAATAGGCCTTTACTTTATTTGTGCTCCTTTCAATCCACAATACGTTAATCTATCCCCTTATGTTCAATAATCTTATTTAATTCATCTCTATTTGGAGCTTGTAATCGCATATATTAACTCAAACTTCCACTTGTGATATTTAATCGGCGTCGGCATACTCCTTTTCTCCCTTCCACCTTCCGGTGCCATTGAAGAATTTGTAGCTCATATTTTGATCTTTTGGAGGAGAGAGAAAAGTGAGGAAGAAAGAAGGATTTAGAAAGGAGAGAGAAAAAGGAGATTGGCAAAGAGGTGATAACATGTTTTTTCTACTCGTAAAATCTAAAACCACTAAAAGTGGTTTCCGCCATTTCGTAAAAGGCCCATATTTTGTTTTATTAAGCAACTTTGCCAAACAAGTTGTGATTATGTTTTTTGGAAAAAGAAACGAAAATCAAGAAACCACTAGATTAATTACTTTAGTTAACTGGTTGATTTTATGCTTAACCATCAGGTCGAGCCGAAAAAACATTAACTAGTGTAAATTAAATTACCAATCGCTTTCATCAACTGATTAATTATGTGGTCTTATGGACACACCATCTAATTAGTTTTCGTGAATGGTAGTTATATTTTAGGTCCAGGATTTTGTTAGGAATCTTGAACTGTATTTTGATGGTTTCTACGGAGTAATATATTATCTTTGAATGATTGATCAAAATCAATGAGTGAAGGTCCTCCACTACTCATCAACACTCATGAACCGGTATGTAAACAGAGGAGTTGTGGCTAAACTTGCATCCCCATATGTGAACATTATTTTATAAAATTGCTCTTGCTCTTGTGATGTTTTCTTCCAATCTTATTTTCTCTCACCGTATGTTTCAAATATTTCTAAGGTGTTTAACGGTTCCCTTGGCTGTCTAGACTCTAGACACAGTTTTCTGTATGGTTACACCTAGGTTTCTGCATCGTAAAGTATTTTTTTTTCACAAGGTTTAAAGCTTTCCATGACCATGGTAATACCAACTGTTGTCACTCTTAGATGCTACAGGTGTGTCATGTCCATTCCATGACAGTGGAAAGGCAAATGGGAAATAGTACTTTAGTTTACAGTTAACTGTAGGAAAGAAAAAGATGTAGCGTCCAACTTTAACTTGTTGTGAAAATGCAATTGTTTCCTTGTATGCTTTATCAACATTGGGGAACTCGTTTGGGTTAAGAGCATTGTTATCAGTACTAAAAATAATATAACAGGTGTTGTTGGAAAAGTTGCACACAAATTTCTTGTACTTTGTATGGGACTTTTGTGTACTACTGATGATGATATGCTTTAGCCATCTGAGACCAGGTTAAATGTTTCCAATAGTCAAAGGTTACAAGCTGTTAGTACTTCCCCCAAGCTGATATGATTTGTTGTTGATCATAACCAGCTTCTTGTGCCTCTCACACTAATGCAGGTTTTCCGGAGAAATTTTTGTGCAAAAGTCGCTTGCAAGAGTTTACCCAAAGAGCAAGCATACCGTTGCCGATTTATCATACCAAATACAAAGGGGTACCACCACAAGCACCAAGTTTTACGTCTACTGTTCAGGTAGATGGAGAAACATACACATCTGCTACCGCATGTTCTAACAAAAAGGCAGCTGAGCAAGATGCTGCAAGGATTGCATTGGAAGGCATATCTAAGAAGATAAAGAATTGCATATCCAAGAAGACAACTGAAGGAGGATTTCCTCCAATTTATCAGGTTCATAACATGTCTTAAATGTTTGTGCTGTAAACTAATATGGTTTATGCCTTGGACCTCTCATGAATACAGAACAAGGAAATTACTTTTTCACTGGCTATCAGTTTAGTTACAACAACCAATTTTTTTTTCTAATTGGTGAATGCTTGATGATCACTGCCCATGCTTTCCCAAATGAGGTAGATAAATGTCCTATACAGTGCTTACCATCCTTCATTTCTGCGCAAAACCAAAAACTTCTTACCCAAATGTGGAGAGGCCATACTACAAAAATCGTCGCTTTGTGTATCACAATCTCACAGGGTTCAGATATCTCGCATTTTGTATCCCATGTTTTCACATCCCCATATGGCCATATGTATTCAATGAATGGTTAAGCATGCTAAACTCCAAACAATTTAACTTTGAACTTTGATATGTAGTGTTATAGTTCAATAGAGAATTTGAAGACTACAATTATAAATTCTGAAATTGATCTTAATTTTTTTCTTATTTGATTTGGTTATTGTGCCTGTCTTTGATTTTCATCTAATCATTTTCTTGTACTTTTCCTGTTTCAGGATAAGGTATTTTGCAAGTCCATACTTCATGAGTTCTCTATGAAAATGAACATAGAAAAACCAGAGTATGATACTGTTAGATCAGAGGGGGTAATTCCTGTTTTCATTTCCTCTTTGGTTTTCAAAGGAGTGAAATATGTTGGCCAACCTAGTGTGAATAAGAAAGAGGCCGAGCAATTAGCAGCACGTGCTGTTATATTATCCATTTTGGGTATCTTCCCACCTTCCAGTACTATGTATTCAAGATTTAACCGTGGTACATGATTGTATATTTAGCTCTTTTTACATGGTTTCTATGTCTTTCTTGCTTCTGAATTGTGCAGCCAAGACTGGAGAAGGAATGCATCTATCAGAGATTATCAAATCCAAAGCTAAACTTTTTTCTGCAGTGCATCAACATAACCATGTAAATGTAGATTCTGACAGTATAAGTCAAGCTGAAGATAATGTGAATGGTGGTGCATTAGCCCTCCTAGAGCAATCGAGTAAAAAGGAAGCAGAAGCTGACCAAGCTAATGACGGGACTGGAAGTGTTGTTGCTCTATCCCTCTCAGAGCAATCGAGTGAAAAGAATGACCAAATTAGTAATGGTATTGGGTGCGCGGTGGTGGAGGTTCTCCAGGGACAGTCTCATGTTCTGCTTAGACATGAATTTAGAAAGCCAGTGCAAGAGACAGAGACTATTTCTGAACCAATTACGCTTCCCATTGCATTTGTACCGTCACTTCAAGTTGAAAACTCTTTGAATGCCTTTGGGGTGAAAAGGAAGAGCAAGAGGAAGAAAAAGGCTAACAAGAAAGCAAAAACAGAAACACAGTAAGTCTAAGCTTTTGTTTTCTGTATTAAAATTAATCTTGCCCTGCAATGAAAAATGTGTGTCTCTAGTTGCTTGTACTTTTGGCGCTATAAAGACTAGTAATTTGTATCTGGGTTTTGATTTTACAATACTACAAAATGATTTTGGATCAGATGGAGTGTTTTGGTAATATCTTTCGGTTCTTTAAAATCTTTATTCGTGCACTATGTCTTCAAGGTCACAGGTCTGTGAGTCTGACATTCAGTTCCAAAATGAACTCATTTGTCAATTGTTATCTACTACAAACTTTTTCCTCTCTGAACTGTAACACACTCATAGTTAAGCTCCCTCTACTACCTGTTCTTAGAAAGTGTAGCTTTGAAAATATAACAAATATTCTTAGACGGATTTAGTATTAAGGAAACATAAGAAAGGTAGGGGAAGATCTGTTCTTCAAGCTTATGCTGCTGTCATGAATACATGACATGTGCTGAAGCGCGTATTGGCTTATAACTTGTTTATGAACTCCCATAGCAGTTTTCTTTGCTTTAAATTATAAGAACCAGTGGCCTAATATTTTGTCTTAATAGGTAATACAGGTATGAACCATGTTGTATTTTGAAGACAACTCTCGAGCAAGTGGATCCTGATGTGAATAGACTTGTTAACATGCTTTTGTTTTGTCAAATGTTACCAGCTGAACAGCCTGCTCCGAGCCTCCGGTTACAACATTATGTATGTAAGAGGTTGTTTAGTGATTTCCATCTTTTTGGTGTATGTATGTATTAG

mRNA sequence

GTTGCTTGGGCTTTGCTTTTCGTTCTGTTTTATTGTTGTTGCTTTTTCCTTTCTAGTTTGTAATATTTTCCTTCTTGTTGGGCCTGATCTTCGTTTCCACAAAAAAAAAAAAAAACAAAATCATGTGACCAAATTTTTCATGGGACTTGGGGTGACATTTATAATCGTTGATGCTTAAATTGCGACAAACATTTCTCAATAACACTCTATTCACTAACTCGCAACTTTTCGTCTTCGAAAGTGTGAAAATCGATTCAATTTCTTCCATAAATTCAACAATTTCCCCTTACTTCCTTGTAAACCCTAGCACTATTTCCACTAAATTTCAGTTGCACCCCATTTCTATGGATGAAGAAGCTGGTTCGCTGCCGAGCTCACTACTACTGCTACCCCAGCAACCGGAACAACCTCAAAGTTTTCCGGAGAAATTTTTGTGCAAAAGTCGCTTGCAAGAGTTTACCCAAAGAGCAAGCATACCGTTGCCGATTTATCATACCAAATACAAAGGGGTACCACCACAAGCACCAAGTTTTACGTCTACTGTTCAGGTAGATGGAGAAACATACACATCTGCTACCGCATGTTCTAACAAAAAGGCAGCTGAGCAAGATGCTGCAAGGATTGCATTGGAAGGCATATCTAAGAAGATAAAGAATTGCATATCCAAGAAGACAACTGAAGGAGGATTTCCTCCAATTTATCAGGATAAGGTATTTTGCAAGTCCATACTTCATGAGTTCTCTATGAAAATGAACATAGAAAAACCAGAGTATGATACTGTTAGATCAGAGGGGGTAATTCCTGTTTTCATTTCCTCTTTGGTTTTCAAAGGAGTGAAATATGTTGGCCAACCTAGTGTGAATAAGAAAGAGGCCGAGCAATTAGCAGCACGTGCTGTTATATTATCCATTTTGGCCAAGACTGGAGAAGGAATGCATCTATCAGAGATTATCAAATCCAAAGCTAAACTTTTTTCTGCAGTGCATCAACATAACCATGTAAATGTAGATTCTGACAGTATAAGTCAAGCTGAAGATAATGTGAATGGTGGTGCATTAGCCCTCCTAGAGCAATCGAGTAAAAAGGAAGCAGAAGCTGACCAAGCTAATGACGGGACTGGAAGTGTTGTTGCTCTATCCCTCTCAGAGCAATCGAGTGAAAAGAATGACCAAATTAGTAATGGTATTGGGTGCGCGGTGGTGGAGGTTCTCCAGGGACAGTCTCATGTTCTGCTTAGACATGAATTTAGAAAGCCAGTGCAAGAGACAGAGACTATTTCTGAACCAATTACGCTTCCCATTGCATTTGTACCGTCACTTCAAGTTGAAAACTCTTTGAATGCCTTTGGGGTGAAAAGGAAGAGCAAGAGGAAGAAAAAGGCTAACAAGAAAGCAAAAACAGAAACACAGTATGAACCATGTTGTATTTTGAAGACAACTCTCGAGCAAGTGGATCCTGATGTGAATAGACTTGTTAACATGCTTTTGTTTTGTCAAATGTTACCAGCTGAACAGCCTGCTCCGAGCCTCCGGTTACAACATTATGTATGTAAGAGGTTGTTTAGTGATTTCCATCTTTTTGGTGTATGTATGTATTAG

Coding sequence (CDS)

ATGCTTAAATTGCGACAAACATTTCTCAATAACACTCTATTCACTAACTCGCAACTTTTCGTCTTCGAAAGTGTGAAAATCGATTCAATTTCTTCCATAAATTCAACAATTTCCCCTTACTTCCTTGTAAACCCTAGCACTATTTCCACTAAATTTCAGTTGCACCCCATTTCTATGGATGAAGAAGCTGGTTCGCTGCCGAGCTCACTACTACTGCTACCCCAGCAACCGGAACAACCTCAAAGTTTTCCGGAGAAATTTTTGTGCAAAAGTCGCTTGCAAGAGTTTACCCAAAGAGCAAGCATACCGTTGCCGATTTATCATACCAAATACAAAGGGGTACCACCACAAGCACCAAGTTTTACGTCTACTGTTCAGGTAGATGGAGAAACATACACATCTGCTACCGCATGTTCTAACAAAAAGGCAGCTGAGCAAGATGCTGCAAGGATTGCATTGGAAGGCATATCTAAGAAGATAAAGAATTGCATATCCAAGAAGACAACTGAAGGAGGATTTCCTCCAATTTATCAGGATAAGGTATTTTGCAAGTCCATACTTCATGAGTTCTCTATGAAAATGAACATAGAAAAACCAGAGTATGATACTGTTAGATCAGAGGGGGTAATTCCTGTTTTCATTTCCTCTTTGGTTTTCAAAGGAGTGAAATATGTTGGCCAACCTAGTGTGAATAAGAAAGAGGCCGAGCAATTAGCAGCACGTGCTGTTATATTATCCATTTTGGCCAAGACTGGAGAAGGAATGCATCTATCAGAGATTATCAAATCCAAAGCTAAACTTTTTTCTGCAGTGCATCAACATAACCATGTAAATGTAGATTCTGACAGTATAAGTCAAGCTGAAGATAATGTGAATGGTGGTGCATTAGCCCTCCTAGAGCAATCGAGTAAAAAGGAAGCAGAAGCTGACCAAGCTAATGACGGGACTGGAAGTGTTGTTGCTCTATCCCTCTCAGAGCAATCGAGTGAAAAGAATGACCAAATTAGTAATGGTATTGGGTGCGCGGTGGTGGAGGTTCTCCAGGGACAGTCTCATGTTCTGCTTAGACATGAATTTAGAAAGCCAGTGCAAGAGACAGAGACTATTTCTGAACCAATTACGCTTCCCATTGCATTTGTACCGTCACTTCAAGTTGAAAACTCTTTGAATGCCTTTGGGGTGAAAAGGAAGAGCAAGAGGAAGAAAAAGGCTAACAAGAAAGCAAAAACAGAAACACAGTATGAACCATGTTGTATTTTGAAGACAACTCTCGAGCAAGTGGATCCTGATGTGAATAGACTTGTTAACATGCTTTTGTTTTGTCAAATGTTACCAGCTGAACAGCCTGCTCCGAGCCTCCGGTTACAACATTATGTATGTAAGAGGTTGTTTAGTGATTTCCATCTTTTTGGTGTATGTATGTATTAG

Protein sequence

MLKLRQTFLNNTLFTNSQLFVFESVKIDSISSINSTISPYFLVNPSTISTKFQLHPISMDEEAGSLPSSLLLLPQQPEQPQSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACSNKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKPEYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSILAKTGEGMHLSEIIKSKAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALALLEQSSKKEAEADQANDGTGSVVALSLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRHEFRKPVQETETISEPITLPIAFVPSLQVENSLNAFGVKRKSKRKKKANKKAKTETQYEPCCILKTTLEQVDPDVNRLVNMLLFCQMLPAEQPAPSLRLQHYVCKRLFSDFHLFGVCMY

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24923.1	Spo24923.1	mRNA

Homology

[Close]

BLAST of Spo24923.1 vs. NCBI nr
Match: gi|902211677|gb|KNA16793.1| (hypothetical protein SOVF_085960 [Spinacia oleracea])

HSP 1 Score: 676.4 bits (1744), Expect = 3.600e-191
Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 1


		  
Query: 59  MDEEAGSLPSSLLLLPQQPEQPQSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQA 118
           MDEEAGSLPSSLLLLPQQPEQPQSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQA
Sbjct: 1   MDEEAGSLPSSLLLLPQQPEQPQSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQA 60

Query: 119 PSFTSTVQVDGETYTSATACSNKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQ 178
           PSFTSTVQVDGETYTSATACSNKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQ
Sbjct: 61  PSFTSTVQVDGETYTSATACSNKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQ 120

Query: 179 DKVFCKSILHEFSMKMNIEKPEYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQL 238
           DKVFCKSILHEFSMKMNIEKPEYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQL
Sbjct: 121 DKVFCKSILHEFSMKMNIEKPEYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQL 180

Query: 239 AARAVILSILAKTGEGMHLSEIIKSKAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALAL 298
           AARAVILSILAKTGEGMHLSEIIKSKAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALAL
Sbjct: 181 AARAVILSILAKTGEGMHLSEIIKSKAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALAL 240

Query: 299 LEQSSKKEAEADQANDGTGSVVALSLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRHE 358
           LEQSSKKEAEADQANDGTGSVVALSLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRHE
Sbjct: 241 LEQSSKKEAEADQANDGTGSVVALSLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRHE 300

Query: 359 FRKPVQETETISEPITLPIAFVPSLQVENSLNAFGVKRKSKRKKKANKKAKTETQ 414
           FRKPVQETETISEPITLPIAFVPSLQVENSLNAFGVKRKSKRKKKANKKAKTETQ
Sbjct: 301 FRKPVQETETISEPITLPIAFVPSLQVENSLNAFGVKRKSKRKKKANKKAKTETQ 355

[Close]

BLAST of Spo24923.1 vs. NCBI nr
Match: gi|731316020|ref|XP_010693902.1| (PREDICTED: uncharacterized protein LOC104906787 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 354.0 bits (907), Expect = 4.100e-94
Identity = 210/356 (58.99%), Postives = 250/356 (70.22%), Query Frame = 1


		  
Query: 59  MDEEAGSLPSSLLLLPQQPEQPQSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQA 118
           M E+AGS  S LL+L +Q EQ QSF +  L K+RLQEFTQRA I  P+YHT  +  P   
Sbjct: 1   MAEQAGSQSSLLLVLSEQKEQQQSFSDNLLYKNRLQEFTQRAHIQFPVYHTVNEAGPRDL 60

Query: 119 PSFTSTVQVDGETYTSATACSNKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQ 178
           P F STV+VDGETY+     S++KAAE+D A+IALEGI KKI+NCI+KKTTEGGFPPI Q
Sbjct: 61  PKFRSTVEVDGETYSCLNTFSSRKAAEKDVAKIALEGIYKKIQNCITKKTTEGGFPPILQ 120

Query: 179 DKVFCKSILHEFSMKMNIEKPEYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQL 238
           DK+FCKSILHEF+ KMN+EKP+YDT + EG+IPVF SSLVF G+KY G PSV+KKEAEQL
Sbjct: 121 DKIFCKSILHEFATKMNMEKPKYDTAKVEGLIPVFTSSLVFNGMKYPGGPSVSKKEAEQL 180

Query: 239 AARAVILSILAKTGEGMHLSEIIKSKAKLFSAVHQHNHVNVDSDSI-SQAEDNVNGGALA 298
           AARA ILSILA +G GMHL EI+KSK K +SAVH H   + D+  + S +   V   A+ 
Sbjct: 181 AARAAILSILADSGLGMHLLEIVKSKGKFYSAVHDHISGDTDASLLQSHSGTPVGTSAIK 240

Query: 299 LLEQSSKKEAEADQANDGTGSVVALSLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRH 358
           +  QSS +  E        G+VVAL+  E      DQ SN I   V EV QG+SHV   H
Sbjct: 241 VGSQSSHQAGE-------LGNVVALTPPEA-----DQASNLITNVVSEVHQGESHVQPTH 300

Query: 359 EFRKPVQETETISEPITLPIAFVPSLQVENSLNA--FGVKRKSKRKKKANKKAKTE 412
           EFRKP    ETIS+ + LPIAFVPS Q EN + A   G KRK KR+KKANKKAKTE
Sbjct: 301 EFRKP--GIETISQAVPLPIAFVPSTQAENYVIASISGGKRKGKRRKKANKKAKTE 342

[Close]

BLAST of Spo24923.1 vs. NCBI nr
Match: gi|359488195|ref|XP_002272597.2| (PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera])

HSP 1 Score: 220.3 bits (560), Expect = 7.100e-54
Identity = 160/349 (45.85%), Postives = 199/349 (57.02%), Query Frame = 1


		  
Query: 84  PEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACSNKKA 143
           PE  + K+RLQE+TQR++IPLPIY T  +G    AP F STV VDG TYTS    S++KA
Sbjct: 18  PEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQ-HAPKFRSTVLVDGATYTSPNTFSHRKA 77

Query: 144 AEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKPEYDT 203
           AEQD AR+ALE ISKKIK        + G P I +D VFCKSIL+EF++KMN+EKP Y T
Sbjct: 78  AEQDVARLALEFISKKIK--------DEGCPLIREDTVFCKSILNEFAVKMNLEKPTYTT 137

Query: 204 VRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSILAKTGEGMHLSEIIKS 263
           V+ EG++PVF+SSLVF GV Y G    NKKEAEQLAAR VILSIL  +G G  LSEIIKS
Sbjct: 138 VQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSILGNSGSGTLLSEIIKS 197

Query: 264 KAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALALLEQSSKKEAEADQANDG-TGSVVAL 323
           K KL++A+H+    +     I         G  + +     KE E     D    + V++
Sbjct: 198 KVKLYAALHRVKDPSYIHTGILPI------GLTSGIPPCKGKEVEVAPGTDQLLPTAVSV 257

Query: 324 SLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRHEFRKPVQETETISEPITLPIAFVPS 383
            LS Q               +V V      V   HE  KP  +    SE I  PI+FVPS
Sbjct: 258 PLSGQ---------------LVHVPVTHPPV---HELEKP--KPNVSSEVIAPPISFVPS 317

Query: 384 LQVENSL--NAFGVKRKSKRKKKANKKAKTETQYEPCCILKTTLEQVDP 430
           +  +  +     G KR  K KKKANKK +T+ Q  P  +L   L Q  P
Sbjct: 318 VFEQPLVVSPTTGRKRNRKNKKKANKKLRTDAQL-PVAVL--PLNQASP 328

[Close]

BLAST of Spo24923.1 vs. NCBI nr
Match: gi|731417508|ref|XP_010660329.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Vitis vinifera])

HSP 1 Score: 218.0 bits (554), Expect = 3.500e-53
Identity = 158/345 (45.80%), Postives = 197/345 (57.10%), Query Frame = 1


		  
Query: 74  PQQPEQP----QSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDG 133
           P + E P     S PE  + K+RLQE+TQR++IPLPIY T  +G    AP F STV VDG
Sbjct: 4   PVKAEHPGPSSTSLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQ-HAPKFRSTVLVDG 63

Query: 134 ETYTSATACSNKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQDKVFCKSILHE 193
            TYTS    S++KAAEQD AR+ALE ISKKIK        + G P I +D VFCKSIL+E
Sbjct: 64  ATYTSPNTFSHRKAAEQDVARLALEFISKKIK--------DEGCPLIREDTVFCKSILNE 123

Query: 194 FSMKMNIEKPEYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSILA 253
           F++KMN+EKP Y TV+ EG++PVF+SSLVF GV Y G    NKKEAEQLAAR VILSIL 
Sbjct: 124 FAVKMNLEKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSILG 183

Query: 254 KTGEGMHLSEIIKSKAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALALLEQSSKKEAEA 313
            +G G  LSEIIKSK KL++A+H+    +     I         G  + +     KE E 
Sbjct: 184 NSGSGTLLSEIIKSKVKLYAALHRVKDPSYIHTGILPI------GLTSGIPPCKGKEVEV 243

Query: 314 DQANDG-TGSVVALSLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRHEFRKPVQETET 373
               D    + V++ LS Q               +V V      V   HE  KP  +   
Sbjct: 244 APGTDQLLPTAVSVPLSGQ---------------LVHVPVTHPPV---HELEKP--KPNV 303

Query: 374 ISEPITLPIAFVPSLQVENSL--NAFGVKRKSKRKKKANKKAKTE 412
            SE I  PI+FVPS+  +  +     G KR  K KKKANKK +T+
Sbjct: 304 SSEVIAPPISFVPSVFEQPLVVSPTTGRKRNRKNKKKANKKLRTD 313

[Close]

BLAST of Spo24923.1 vs. NCBI nr
Match: gi|731417500|ref|XP_010660325.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X1 [Vitis vinifera])

HSP 1 Score: 217.6 bits (553), Expect = 4.600e-53
Identity = 154/331 (46.53%), Postives = 192/331 (58.01%), Query Frame = 1


		  
Query: 84  PEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACSNKKA 143
           PE  + K+RLQE+TQR++IPLPIY T  +G    AP F STV VDG TYTS    S++KA
Sbjct: 18  PEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQ-HAPKFRSTVLVDGATYTSPNTFSHRKA 77

Query: 144 AEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKPEYDT 203
           AEQD AR+ALE ISKKIK        + G P I +D VFCKSIL+EF++KMN+EKP Y T
Sbjct: 78  AEQDVARLALEFISKKIK--------DEGCPLIREDTVFCKSILNEFAVKMNLEKPTYTT 137

Query: 204 VRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSILAKTGEGMHLSEIIKS 263
           V+ EG++PVF+SSLVF GV Y G    NKKEAEQLAAR VILSIL  +G G  LSEIIKS
Sbjct: 138 VQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSILGNSGSGTLLSEIIKS 197

Query: 264 KAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALALLEQSSKKEAEADQANDG-TGSVVAL 323
           K KL++A+H+    +     I         G  + +     KE E     D    + V++
Sbjct: 198 KVKLYAALHRVKDPSYIHTGILPI------GLTSGIPPCKGKEVEVAPGTDQLLPTAVSV 257

Query: 324 SLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRHEFRKPVQETETISEPITLPIAFVPS 383
            LS Q               +V V      V   HE  KP  +    SE I  PI+FVPS
Sbjct: 258 PLSGQ---------------LVHVPVTHPPV---HELEKP--KPNVSSEVIAPPISFVPS 313

Query: 384 LQVENSL--NAFGVKRKSKRKKKANKKAKTE 412
           +  +  +     G KR  K KKKANKK +T+
Sbjct: 318 VFEQPLVVSPTTGRKRNRKNKKKANKKLRTD 313

[Close]

BLAST of Spo24923.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBB5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085960 PE=4 SV=1)

HSP 1 Score: 676.4 bits (1744), Expect = 2.500e-191
Identity = 355/355 (100.00%), Postives = 355/355 (100.00%), Query Frame = 1


		  
Query: 59  MDEEAGSLPSSLLLLPQQPEQPQSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQA 118
           MDEEAGSLPSSLLLLPQQPEQPQSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQA
Sbjct: 1   MDEEAGSLPSSLLLLPQQPEQPQSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQA 60

Query: 119 PSFTSTVQVDGETYTSATACSNKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQ 178
           PSFTSTVQVDGETYTSATACSNKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQ
Sbjct: 61  PSFTSTVQVDGETYTSATACSNKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQ 120

Query: 179 DKVFCKSILHEFSMKMNIEKPEYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQL 238
           DKVFCKSILHEFSMKMNIEKPEYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQL
Sbjct: 121 DKVFCKSILHEFSMKMNIEKPEYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQL 180

Query: 239 AARAVILSILAKTGEGMHLSEIIKSKAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALAL 298
           AARAVILSILAKTGEGMHLSEIIKSKAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALAL
Sbjct: 181 AARAVILSILAKTGEGMHLSEIIKSKAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALAL 240

Query: 299 LEQSSKKEAEADQANDGTGSVVALSLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRHE 358
           LEQSSKKEAEADQANDGTGSVVALSLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRHE
Sbjct: 241 LEQSSKKEAEADQANDGTGSVVALSLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRHE 300

Query: 359 FRKPVQETETISEPITLPIAFVPSLQVENSLNAFGVKRKSKRKKKANKKAKTETQ 414
           FRKPVQETETISEPITLPIAFVPSLQVENSLNAFGVKRKSKRKKKANKKAKTETQ
Sbjct: 301 FRKPVQETETISEPITLPIAFVPSLQVENSLNAFGVKRKSKRKKKANKKAKTETQ 355

[Close]

BLAST of Spo24923.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FSF9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g027800 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 2.900e-94
Identity = 210/356 (58.99%), Postives = 250/356 (70.22%), Query Frame = 1


		  
Query: 59  MDEEAGSLPSSLLLLPQQPEQPQSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQA 118
           M E+AGS  S LL+L +Q EQ QSF +  L K+RLQEFTQRA I  P+YHT  +  P   
Sbjct: 1   MAEQAGSQSSLLLVLSEQKEQQQSFSDNLLYKNRLQEFTQRAHIQFPVYHTVNEAGPRDL 60

Query: 119 PSFTSTVQVDGETYTSATACSNKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQ 178
           P F STV+VDGETY+     S++KAAE+D A+IALEGI KKI+NCI+KKTTEGGFPPI Q
Sbjct: 61  PKFRSTVEVDGETYSCLNTFSSRKAAEKDVAKIALEGIYKKIQNCITKKTTEGGFPPILQ 120

Query: 179 DKVFCKSILHEFSMKMNIEKPEYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQL 238
           DK+FCKSILHEF+ KMN+EKP+YDT + EG+IPVF SSLVF G+KY G PSV+KKEAEQL
Sbjct: 121 DKIFCKSILHEFATKMNMEKPKYDTAKVEGLIPVFTSSLVFNGMKYPGGPSVSKKEAEQL 180

Query: 239 AARAVILSILAKTGEGMHLSEIIKSKAKLFSAVHQHNHVNVDSDSI-SQAEDNVNGGALA 298
           AARA ILSILA +G GMHL EI+KSK K +SAVH H   + D+  + S +   V   A+ 
Sbjct: 181 AARAAILSILADSGLGMHLLEIVKSKGKFYSAVHDHISGDTDASLLQSHSGTPVGTSAIK 240

Query: 299 LLEQSSKKEAEADQANDGTGSVVALSLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRH 358
           +  QSS +  E        G+VVAL+  E      DQ SN I   V EV QG+SHV   H
Sbjct: 241 VGSQSSHQAGE-------LGNVVALTPPEA-----DQASNLITNVVSEVHQGESHVQPTH 300

Query: 359 EFRKPVQETETISEPITLPIAFVPSLQVENSLNA--FGVKRKSKRKKKANKKAKTE 412
           EFRKP    ETIS+ + LPIAFVPS Q EN + A   G KRK KR+KKANKKAKTE
Sbjct: 301 EFRKP--GIETISQAVPLPIAFVPSTQAENYVIASISGGKRKGKRRKKANKKAKTE 342

[Close]

BLAST of Spo24923.1 vs. UniProtKB/TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.000e-54
Identity = 160/349 (45.85%), Postives = 199/349 (57.02%), Query Frame = 1


		  
Query: 84  PEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACSNKKA 143
           PE  + K+RLQE+TQR++IPLPIY T  +G    AP F STV VDG TYTS    S++KA
Sbjct: 18  PEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQ-HAPKFRSTVLVDGATYTSPNTFSHRKA 77

Query: 144 AEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKPEYDT 203
           AEQD AR+ALE ISKKIK        + G P I +D VFCKSIL+EF++KMN+EKP Y T
Sbjct: 78  AEQDVARLALEFISKKIK--------DEGCPLIREDTVFCKSILNEFAVKMNLEKPTYTT 137

Query: 204 VRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSILAKTGEGMHLSEIIKS 263
           V+ EG++PVF+SSLVF GV Y G    NKKEAEQLAAR VILSIL  +G G  LSEIIKS
Sbjct: 138 VQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSILGNSGSGTLLSEIIKS 197

Query: 264 KAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALALLEQSSKKEAEADQANDG-TGSVVAL 323
           K KL++A+H+    +     I         G  + +     KE E     D    + V++
Sbjct: 198 KVKLYAALHRVKDPSYIHTGILPI------GLTSGIPPCKGKEVEVAPGTDQLLPTAVSV 257

Query: 324 SLSEQSSEKNDQISNGIGCAVVEVLQGQSHVLLRHEFRKPVQETETISEPITLPIAFVPS 383
            LS Q               +V V      V   HE  KP  +    SE I  PI+FVPS
Sbjct: 258 PLSGQ---------------LVHVPVTHPPV---HELEKP--KPNVSSEVIAPPISFVPS 317

Query: 384 LQVENSL--NAFGVKRKSKRKKKANKKAKTETQYEPCCILKTTLEQVDP 430
           +  +  +     G KR  K KKKANKK +T+ Q  P  +L   L Q  P
Sbjct: 318 VFEQPLVVSPTTGRKRNRKNKKKANKKLRTDAQL-PVAVL--PLNQASP 328

[Close]

BLAST of Spo24923.1 vs. UniProtKB/TrEMBL
Match: V4S8N8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011836mg PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.200e-53
Identity = 148/378 (39.15%), Postives = 209/378 (55.29%), Query Frame = 1


		  
Query: 80  PQSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACS 139
           P   PE  + K+RLQE  QR+ IPLP+Y +  +G    AP F ++V VDG TYTS    S
Sbjct: 63  PNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQ-HAPKFRASVSVDGVTYTSPNTFS 122

Query: 140 NKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKP 199
           ++KAAEQD A+IALE        CISKK  + G P I QD VFCKSIL+EF++KMN+E P
Sbjct: 123 HRKAAEQDVAKIALE--------CISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELP 182

Query: 200 EYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSILAKTGEGMHLSE 259
            Y T +SE ++PVF+SSLVF GV Y G+P  +KKEAEQLAARAVI ++L  +G    LSE
Sbjct: 183 AYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSE 242

Query: 260 IIKSKAKLFSAVHQHNHVNVDSDSISQA---------------------EDNVNGGALAL 319
           IIKSK KL++A+++    N  +  I+ +                     E +V   ++ +
Sbjct: 243 IIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPI 302

Query: 320 LEQS------SKKEAEADQANDGTGSVVALSLSEQSSEKNDQISNGIGCAVVEVLQGQSH 379
           + ++      +    EA      T +V+ +S    S+  + + S G+             
Sbjct: 303 IPEATAGIHPTPAITEASTGMHPTSAVIEVSTGMHSTAADSETSTGMN------------ 362

Query: 380 VLLRHEFRKPVQETETISEPITLPIAFVPSLQVENSL-NAFGVKRKSKRKKKANKKAKTE 430
            L  H F+KP  + E  SEP+ LPI FVP +  ++S   +    ++ K K+KANKK +T+
Sbjct: 363 -LPCHPFKKP--KLEPSSEPVVLPIPFVPPVLGQHSEGGSSSTNKRRKNKRKANKKLRTD 413

[Close]

BLAST of Spo24923.1 vs. UniProtKB/TrEMBL
Match: A0A067F6X6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014689mg PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.200e-52
Identity = 148/367 (40.33%), Postives = 206/367 (56.13%), Query Frame = 1


		  
Query: 80  PQSFPEKFLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACS 139
           P   PE  + K+RLQE  QR+ IPLP+Y +  +G    AP F ++V VDG TYTS    S
Sbjct: 65  PNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQ-HAPKFRASVSVDGVTYTSPNTFS 124

Query: 140 NKKAAEQDAARIALEGISKKIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKP 199
           ++KAAEQD A+IALE        CISKK  + G P I QD VFCKSIL+EF++KMN+E P
Sbjct: 125 HRKAAEQDVAKIALE--------CISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELP 184

Query: 200 EYDTVRSEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSILAKTGEGMHLSE 259
            Y T +SE ++PVF+SSLVF GV Y G+P  +KKEAEQLAARAVI ++L  +G    LSE
Sbjct: 185 AYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSE 244

Query: 260 IIKSKAKLFSAVHQHNHVNVDSDSISQAEDNVNGGALALLEQSSKKEAEADQANDGTGSV 319
           IIKSK KL++A+++    N  +  I  A   V   A+              +A+ G  S+
Sbjct: 245 IIKSKGKLYAALNKVKESNYSTQKI--ATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSI 304

Query: 320 VAL-----------SLSEQSSEKND-----QISNGIGCAVVEVLQGQSHVLLRHEFRKPV 379
             +           +++E S+  +      ++S G+     +        L  H F+KP 
Sbjct: 305 PTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKP- 364

Query: 380 QETETISEPITLPIAFVPSLQVENSL-NAFGVKRKSKRKKKANKKAKTETQYEPCCILKT 430
            + E  SEP+ LPI FVP +  ++S   +    ++ K K+KANKK +T+ Q    C+   
Sbjct: 365 -KLEPPSEPVVLPIPFVPPVLGQHSEGGSSSTNKRRKNKRKANKKLRTDAQ---PCVSAQ 415

[Close]

BLAST of Spo24923.1 vs. ExPASy Swiss-Prot
Match: DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 8.700e-28
Identity = 80/186 (43.01%), Postives = 111/186 (59.68%), Query Frame = 1


		  
Query: 90  KSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACSNKKAAEQDAA 149
           KS+LQE+ Q+A+  LPIY TK KG   Q   F STV VDGE ++S       K AEQDAA
Sbjct: 40  KSKLQEYLQQANKQLPIYCTKCKGEHHQL-KFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 99

Query: 150 RIALEGISKKIKNCISKKTTEGG----FPPIYQDKVFCKSILHEFSMKMNIEKPEYDTVR 209
           ++A + +       + +K TE      F  I QD VF KSILHE++ K   ++PEY   +
Sbjct: 100 KVAYDTL-------LERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTK 159

Query: 210 SEGVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSILAKTGEGMHLSEIIKSKA 269
           +EG +  ++SS+ F G  Y G  + NKK+AEQ AARA + S+LA     M  ++I++SK 
Sbjct: 160 TEGSVTPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLLATNYTSM--AKIVRSKE 215

Query: 270 KLFSAV 272
           KL  A+
Sbjct: 220 KLIRAI 215

[Close]

BLAST of Spo24923.1 vs. ExPASy Swiss-Prot
Match: DRB7_ORYSJ (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.800e-20
Identity = 60/161 (37.27%), Postives = 87/161 (54.04%), Query Frame = 1


		  
Query: 87  FLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACSNKKAAEQ 146
           ++ KSRLQE+ Q+A +  P YHT +K  P   P F STV ++  +Y S     N+KAAEQ
Sbjct: 32  YVFKSRLQEYAQKAGLQTPEYHT-FKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQ 91

Query: 147 DAARIALEGISKKIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKPEYDTVRS 206
            AA +AL  I K I              P  Q+   CK++L E++ KMN   P Y   +S
Sbjct: 92  SAAEVALMEIVKSI--------PANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKS 151

Query: 207 EGVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSI 248
              +  FI ++   G++Y+G  +  KK+AE  AAR  +L+I
Sbjct: 152 ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 183

[Close]

BLAST of Spo24923.1 vs. ExPASy Swiss-Prot
Match: DRB3_ORYSJ (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.800e-20
Identity = 59/161 (36.65%), Postives = 87/161 (54.04%), Query Frame = 1


		  
Query: 87  FLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACSNKKAAEQ 146
           ++ KSRLQE+ Q+A +  P YHT  +G P   P F STV ++  +Y S    SN+KAAEQ
Sbjct: 34  YVFKSRLQEYAQKAGLQTPEYHTSKEG-PSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQ 93

Query: 147 DAARIALEGISKKIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKPEYDTVRS 206
            AA +AL  I K I              P  Q+   CK++L E++ KMN   P Y   + 
Sbjct: 94  SAAEVALMEIVKSI--------PANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKP 153

Query: 207 EGVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSI 248
              +  F+ ++   G++Y+G  +  KK+AE  AAR  +L+I
Sbjct: 154 ASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 185

[Close]

BLAST of Spo24923.1 vs. ExPASy Swiss-Prot
Match: DRB8_ORYSJ (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.600e-19
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 1


		  
Query: 87  FLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACSNKKAAEQ 146
           ++ KSRLQE+ Q+  +  P YHT +K  P   P F STV ++  +Y S     N+KAAEQ
Sbjct: 32  YVFKSRLQEYAQKTGLQTPEYHT-FKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQ 91

Query: 147 DAARIALEGISKKIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKPEYDTVRS 206
            AA +AL  I K I              P  Q+   CK++L E++ KMN   P Y   +S
Sbjct: 92  SAAEVALMEIVKSI--------PANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKS 151

Query: 207 EGVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSI 248
              +  FI ++   G++Y+G  +  KK+AE  AAR  +L+I
Sbjct: 152 ASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 183

[Close]

BLAST of Spo24923.1 vs. ExPASy Swiss-Prot
Match: DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.200e-18
Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1


		  
Query: 87  FLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACSNKKAAEQ 146
           ++ KSRLQE+ Q+  +P P+Y    +G P     F STV +DG  Y S     N+KAAEQ
Sbjct: 14  YVFKSRLQEYAQKYKLPTPVYEIVKEG-PSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQ 73

Query: 147 DAARIALEGISK--KIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKPEYDTV 206
            AA +AL  ++K  ++  C+S+   E G          CK++L E++ KMN   P Y   
Sbjct: 74  SAAEVALRELAKSSELSQCVSQPVHETG---------LCKNLLQEYAQKMNYAIPLYQCQ 133

Query: 207 RSE--GVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSILAKT 252
           + E  G +  F  ++   G+KY G  +  KK+AE  A R  +L+I + T
Sbjct: 134 KVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDT 172

[Close]

BLAST of Spo24923.1 vs. TAIR (Arabidopsis)
Match: AT1G09700.1 (dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 95.1 bits (235), Expect = 1.200e-19
Identity = 60/169 (35.50%), Postives = 90/169 (53.25%), Query Frame = 1


		  
Query: 87  FLCKSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACSNKKAAEQ 146
           ++ KSRLQE+ Q+  +P P+Y    +G P     F STV +DG  Y S     N+KAAEQ
Sbjct: 14  YVFKSRLQEYAQKYKLPTPVYEIVKEG-PSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQ 73

Query: 147 DAARIALEGISK--KIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKPEYDTV 206
            AA +AL  ++K  ++  C+S+   E G          CK++L E++ KMN   P Y   
Sbjct: 74  SAAEVALRELAKSSELSQCVSQPVHETG---------LCKNLLQEYAQKMNYAIPLYQCQ 133

Query: 207 RSE--GVIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSILAKT 252
           + E  G +  F  ++   G+KY G  +  KK+AE  A R  +L+I + T
Sbjct: 134 KVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDT 172

[Close]

BLAST of Spo24923.1 vs. TAIR (Arabidopsis)
Match: AT2G28380.1 (dsRNA-binding protein 2)

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-14
Identity = 53/159 (33.33%), Postives = 80/159 (50.31%), Query Frame = 1


		  
Query: 90  KSRLQEFTQRASIPLPIYHTKYKGVPPQAPSFTSTVQVDGETYTSATACSNKKAAEQDAA 149
           K++LQE  QR+   LP Y    +G P  AP F +TV  +GE + S   CS  + AE  AA
Sbjct: 3   KNQLQELAQRSCFNLPSYTCIREG-PDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSAA 62

Query: 150 RIALEGISKKIKNCISKKTTEGGFPPIYQDKVFCKSILHEFSMKMNIEKPEYDTVRSE-G 209
            +AL  +S       ++  +      I  +    K++L E + ++    P Y T RS  G
Sbjct: 63  EVALNALS-------NRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLG 122

Query: 210 VIPVFISSLVFKGVKYVGQPSVNKKEAEQLAARAVILSI 248
             PVF  ++   G+ + G P+ NKK+AE+ AA A   S+
Sbjct: 123 HQPVFTGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153

The following BLAST results are available for this feature:

BLAST of Spo24923.1 vs. NCBI nr
BLAST of Spo24923.1 vs. UniProtKB/TrEMBL
BLAST of Spo24923.1 vs. ExPASy Swiss-Prot
BLAST of Spo24923.1 vs. TAIR (Arabidopsis)

BLAST of Spo24923.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902211677\|gb\|KNA16793.1\|	3.6e-191	100.	hypothetical protein SOVF_0859...	[more]
gi\|731316020\|ref\|XP_010693902.1\|	4.1e-94	58.9	PREDICTED: uncharacterized pro...	[more]
gi\|359488195\|ref\|XP_002272597.2\|	7.1e-54	45.8	PREDICTED: double-stranded RNA...	[more]
gi\|731417508\|ref\|XP_010660329.1\|	3.5e-53	45.8	PREDICTED: double-stranded RNA...	[more]
gi\|731417500\|ref\|XP_010660325.1\|	4.6e-53	46.5	PREDICTED: double-stranded RNA...	[more]

BLAST of Spo24923.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RBB5_SPIOL	2.5e-191	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8FSF9_BETVU	2.9e-94	58.9	Uncharacterized protein OS=Bet...	[more]
D7TSR3_VITVI	5.0e-54	45.8	Putative uncharacterized prote...	[more]
V4S8N8_9ROSI	7.2e-53	39.1	Uncharacterized protein OS=Cit...	[more]
A0A067F6X6_CITSI	1.2e-52	40.3	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo24923.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
DRB4_ORYSJ	8.7e-28	43.0	Double-stranded RNA-binding pr...	[more]
DRB7_ORYSJ	8.8e-20	37.2	Double-stranded RNA-binding pr...	[more]
DRB3_ORYSJ	8.8e-20	36.6	Double-stranded RNA-binding pr...	[more]
DRB8_ORYSJ	2.6e-19	36.6	Double-stranded RNA-binding pr...	[more]
DRB1_ARATH	2.2e-18	35.5	Double-stranded RNA-binding pr...	[more]

BLAST of Spo24923.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G09700.1	1.2e-19	35.5	dsRNA-binding domain-like supe...	[more]
AT2G28380.1	1.2e-14	33.3	dsRNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	GENE3D	3.30.160.20		coord: 184..246 score: 4.2E-9coord: 90..156 score: 4.9
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 184..244 score: 6.9E-9coord: 90..154 score: 7.0
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 89..157 score: 3.1E-13coord: 183..248 score: 2.2
IPR014720	Double-stranded RNA-binding domain	PROFILE	PS50137	DS_RBD	coord: 88..158 score: 12
None	No IPR available	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 84..271 score: 6.1
None	No IPR available	PANTHER	PTHR11207:SF8	SUBFAMILY NOT NAMED	coord: 84..271 score: 6.1
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 181..249 score: 1.02E-10coord: 89..156 score: 2.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0006396	RNA processing
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0048868	pollen tube development
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0016192	vesicle-mediated transport
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo06704	0.70	Barchart \| Table
Spo24369	0.67	Barchart \| Table