Spo24902 (gene)

Overview
NameSpo24902
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionU11/U12 small nuclear ribonucleoprotein 25 kDa-like protein
LocationSpoScf_06233 : 3884 .. 4406 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGGAGTGAGAAGAACGAGGGCTCAACTCCGGGCGGCAGAGGCGGAGAAGGTGGTGGTGGAGGCGGAGGCGTAGTATACTGCAGTGAGAACGCGAAAAGGGCAAAGCTGAATTCAACGTTAGCCGCATTACTAGATGACCCCATTCTCTCAGATGTCCCAAAGAAGCCATCTTTATCCGATGTCGACACCCTTATCAGCTTAGAGCTCGGAAGTGCCATGCGTATCTCTGTACTCAAGCTCGACTCCACCTCCTTTGGTATTTTCTCTCTCTTCTTTCTCTCAAGCATTTTCACAAACAGTTGGTGTGCATTTTCATTTTTTACGAGCTTTTTGCTGTCTCATTTTTCTAGATGTTGTGGTCATGAATTCGGCTACGGTGAAGGATTTGAAACTGTGTATTAAGAAGAAAGTTACTGAAATGGAACAATCACATATGGGTCATCGTCATATTTCTTGGTACTACTCTCTTTCTTGTTTCTTAGACTTTCTCTTTGGAGTATTTTTCGTTATTGTATAG

mRNA sequence

ATGGAATGGAGTGAGAAGAACGAGGGCTCAACTCCGGGCGGCAGAGGCGGAGAAGGTGGTGGTGGAGGCGGAGGCGTAGTATACTGCAGTGAGAACGCGAAAAGGGCAAAGCTGAATTCAACGTTAGCCGCATTACTAGATGACCCCATTCTCTCAGATGTCCCAAAGAAGCCATCTTTATCCGATGTCGACACCCTTATCAGCTTAGAGCTCGGAAGTGCCATGCGTATCTCTGTACTCAAGCTCGACTCCACCTCCTTTGATGTTGTGGTCATGAATTCGGCTACGGTGAAGGATTTGAAACTGTGTATTAAGAAGAAAGTTACTGAAATGGAACAATCACATATGGGTCATCGTCATATTTCTTGGTACTACTCTCTTTCTTGTTTCTTAGACTTTCTCTTTGGAGTATTTTTCGTTATTGTATAG

Coding sequence (CDS)

ATGGAATGGAGTGAGAAGAACGAGGGCTCAACTCCGGGCGGCAGAGGCGGAGAAGGTGGTGGTGGAGGCGGAGGCGTAGTATACTGCAGTGAGAACGCGAAAAGGGCAAAGCTGAATTCAACGTTAGCCGCATTACTAGATGACCCCATTCTCTCAGATGTCCCAAAGAAGCCATCTTTATCCGATGTCGACACCCTTATCAGCTTAGAGCTCGGAAGTGCCATGCGTATCTCTGTACTCAAGCTCGACTCCACCTCCTTTGATGTTGTGGTCATGAATTCGGCTACGGTGAAGGATTTGAAACTGTGTATTAAGAAGAAAGTTACTGAAATGGAACAATCACATATGGGTCATCGTCATATTTCTTGGTACTACTCTCTTTCTTGTTTCTTAGACTTTCTCTTTGGAGTATTTTTCGTTATTGTATAG

Protein sequence

MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSHMGHRHISWYYSLSCFLDFLFGVFFVIV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24902.1Spo24902.1mRNA


Homology
[Close]
BLAST of Spo24902.1 vs. NCBI nr
Match: gi|902143828|gb|KNA04876.1| (hypothetical protein SOVF_195630 [Spinacia oleracea])

HSP 1 Score: 269.2 bits (687), Expect = 4.000e-69
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 

		  

Query: 1   MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL 60
           MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL
Sbjct: 1   MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL 60

Query: 61  SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSHMGHRH 120
           SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQS MGHRH
Sbjct: 61  SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRH 120

Query: 121 ISWYYSLSCFLDFLFGVFFVIV 143
           ISWYYSLSCFLDFLFGVFFVIV
Sbjct: 121 ISWYYSLSCFLDFLFGVFFVIV 142
[Close]
BLAST of Spo24902.1 vs. NCBI nr
Match: gi|976920429|gb|KVI05156.1| (hypothetical protein Ccrd_016473 [Cynara cardunculus var. scolymus])

HSP 1 Score: 163.3 bits (412), Expect = 3.100e-37
Identity = 82/100 (82.00%), Postives = 91/100 (91.00%), Query Frame = 1 

		  

Query: 28  YCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSF 87
           Y S N K+AKLNSTLAALLDDP+L+DVPKKP+LSDVDTLISLELGSAMR+SVLKLD+TSF
Sbjct: 36  YNSNNVKKAKLNSTLAALLDDPVLADVPKKPTLSDVDTLISLELGSAMRVSVLKLDNTSF 95

Query: 88  DVVVMNSATVKDLKLCIKKKVTEMEQSHMGHRHISWYYSL 128
           DV +MNSATVKDLKL IKKK+ EMEQS MGHRHISW+  L
Sbjct: 96  DVALMNSATVKDLKLAIKKKINEMEQSKMGHRHISWFVPL 135
[Close]
BLAST of Spo24902.1 vs. NCBI nr
Match: gi|731361663|ref|XP_010692484.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 163.3 bits (412), Expect = 3.100e-37
Identity = 94/127 (74.02%), Postives = 100/127 (78.74%), Query Frame = 1 

		  

Query: 1   MEWSEKNEGSTPGGRG----GEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPK 60
           MEWSEK E S          GEG GG     Y +EN KRA+LNSTL+ALLDDPIL+DVPK
Sbjct: 1   MEWSEKKEDSASASASSSWVGEGLGG-----YNNENVKRARLNSTLSALLDDPILADVPK 60

Query: 61  KPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSHM 120
           KPSLSDVDTLIS ELGSAMRIS+LKLDSTSFDVVVMNS TVKDLKL I KKV +MEQS M
Sbjct: 61  KPSLSDVDTLISFELGSAMRISILKLDSTSFDVVVMNSDTVKDLKLAIIKKVNQMEQSQM 120

Query: 121 GHRHISW 124
           GHR ISW
Sbjct: 121 GHRQISW 122
[Close]
BLAST of Spo24902.1 vs. NCBI nr
Match: gi|590594717|ref|XP_007017930.1| (Ubiquitin-like superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 158.7 bits (400), Expect = 7.600e-36
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 1 

		  

Query: 26  VVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDST 85
           V Y + N K+AKL+STLAALLDDPIL+DVPKKP+LSDVDTLISLELGSAMRIS+LKLD T
Sbjct: 172 VGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLELGSAMRISILKLDGT 231

Query: 86  SFDVVVMNSATVKDLKLCIKKKVTEMEQSHMGHRHISW 124
           SFD+ VMNSATVKDLKL IKKKV E EQS MGHRHISW
Sbjct: 232 SFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISW 269
[Close]
BLAST of Spo24902.1 vs. NCBI nr
Match: gi|590594714|ref|XP_007017929.1| (Ubiquitin-like superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 158.7 bits (400), Expect = 7.600e-36
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 1 

		  

Query: 26  VVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDST 85
           V Y + N K+AKL+STLAALLDDPIL+DVPKKP+LSDVDTLISLELGSAMRIS+LKLD T
Sbjct: 234 VGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLELGSAMRISILKLDGT 293

Query: 86  SFDVVVMNSATVKDLKLCIKKKVTEMEQSHMGHRHISW 124
           SFD+ VMNSATVKDLKL IKKKV E EQS MGHRHISW
Sbjct: 294 SFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISW 331
[Close]
BLAST of Spo24902.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEA8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_195630 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.800e-69
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 1 

		  

Query: 1   MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL 60
           MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL
Sbjct: 1   MEWSEKNEGSTPGGRGGEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSL 60

Query: 61  SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSHMGHRH 120
           SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQS MGHRH
Sbjct: 61  SDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSQMGHRH 120

Query: 121 ISWYYSLSCFLDFLFGVFFVIV 143
           ISWYYSLSCFLDFLFGVFFVIV
Sbjct: 121 ISWYYSLSCFLDFLFGVFFVIV 142
[Close]
BLAST of Spo24902.1 vs. UniProtKB/TrEMBL
Match: A0A103Y9T9_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_016473 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.100e-37
Identity = 82/100 (82.00%), Postives = 91/100 (91.00%), Query Frame = 1 

		  

Query: 28  YCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSF 87
           Y S N K+AKLNSTLAALLDDP+L+DVPKKP+LSDVDTLISLELGSAMR+SVLKLD+TSF
Sbjct: 36  YNSNNVKKAKLNSTLAALLDDPVLADVPKKPTLSDVDTLISLELGSAMRVSVLKLDNTSF 95

Query: 88  DVVVMNSATVKDLKLCIKKKVTEMEQSHMGHRHISWYYSL 128
           DV +MNSATVKDLKL IKKK+ EMEQS MGHRHISW+  L
Sbjct: 96  DVALMNSATVKDLKLAIKKKINEMEQSKMGHRHISWFVPL 135
[Close]
BLAST of Spo24902.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BI80_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g020500 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.100e-37
Identity = 94/127 (74.02%), Postives = 100/127 (78.74%), Query Frame = 1 

		  

Query: 1   MEWSEKNEGSTPGGRG----GEGGGGGGGVVYCSENAKRAKLNSTLAALLDDPILSDVPK 60
           MEWSEK E S          GEG GG     Y +EN KRA+LNSTL+ALLDDPIL+DVPK
Sbjct: 1   MEWSEKKEDSASASASSSWVGEGLGG-----YNNENVKRARLNSTLSALLDDPILADVPK 60

Query: 61  KPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCIKKKVTEMEQSHM 120
           KPSLSDVDTLIS ELGSAMRIS+LKLDSTSFDVVVMNS TVKDLKL I KKV +MEQS M
Sbjct: 61  KPSLSDVDTLISFELGSAMRISILKLDSTSFDVVVMNSDTVKDLKLAIIKKVNQMEQSQM 120

Query: 121 GHRHISW 124
           GHR ISW
Sbjct: 121 GHRQISW 122
[Close]
BLAST of Spo24902.1 vs. UniProtKB/TrEMBL
Match: A0A061FCZ7_THECC (Ubiquitin-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_034316 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.300e-36
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 1 

		  

Query: 26  VVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDST 85
           V Y + N K+AKL+STLAALLDDPIL+DVPKKP+LSDVDTLISLELGSAMRIS+LKLD T
Sbjct: 172 VGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLELGSAMRISILKLDGT 231

Query: 86  SFDVVVMNSATVKDLKLCIKKKVTEMEQSHMGHRHISW 124
           SFD+ VMNSATVKDLKL IKKKV E EQS MGHRHISW
Sbjct: 232 SFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISW 269
[Close]
BLAST of Spo24902.1 vs. UniProtKB/TrEMBL
Match: A0A061FL17_THECC (Ubiquitin-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_034316 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.300e-36
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 1 

		  

Query: 26  VVYCSENAKRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDST 85
           V Y + N K+AKL+STLAALLDDPIL+DVPKKP+LSDVDTLISLELGSAMRIS+LKLD T
Sbjct: 234 VGYNNNNVKKAKLHSTLAALLDDPILADVPKKPTLSDVDTLISLELGSAMRISILKLDGT 293

Query: 86  SFDVVVMNSATVKDLKLCIKKKVTEMEQSHMGHRHISW 124
           SFD+ VMNSATVKDLKL IKKKV E EQS MGHRHISW
Sbjct: 294 SFDIAVMNSATVKDLKLAIKKKVIEFEQSKMGHRHISW 331
[Close]
BLAST of Spo24902.1 vs. ExPASy Swiss-Prot
Match: U1125_ARATH (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.800e-29
Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 1 

		  

Query: 34  KRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMN 93
           KR KL S L+ LL DPIL+DVP+ P+LSDV TL+SLE GSAMR+SV+KLD +S DV VMN
Sbjct: 11  KREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSSLDVAVMN 70

Query: 94  SATVKDLKLCIKKKVTEMEQSHMGHRHISWYYSLSCF 131
           SAT+KDLKL IKKKV EMEQ++MGHRHISW +  S F
Sbjct: 71  SATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNF 107
[Close]
BLAST of Spo24902.1 vs. ExPASy Swiss-Prot
Match: SNR25_HUMAN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.200e-10
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 1 

		  

Query: 42  LAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLK 101
           LA ++ DP+L D+P + +L +V++ I+LE G AM + V K+D     VVV+ SATV DLK
Sbjct: 8   LAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQSATVLDLK 67

Query: 102 LCIKKKVTEMEQSHMGHRHISWYY 126
             I++ V   ++   G +HISW Y
Sbjct: 68  KAIQRYVQLKQEREGGIQHISWSY 91
[Close]
BLAST of Spo24902.1 vs. ExPASy Swiss-Prot
Match: SNR25_MOUSE (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.600e-9
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1 

		  

Query: 45  LLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCI 104
           ++ DP+L D+P + +L +V++ I+LE G AM + V K+D     VVV+ +ATV DLK  I
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 105 KKKVTEMEQSHMGHRHISWYY 126
           ++ V   ++   G +HISW Y
Sbjct: 62  QRYVQLKQEREGGVQHISWSY 82
[Close]
BLAST of Spo24902.1 vs. ExPASy Swiss-Prot
Match: SNR25_BOVIN (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 4.600e-9
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1 

		  

Query: 45  LLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMNSATVKDLKLCI 104
           ++ DP+L D+P + +L +V++ I+LE G AM + V K+D     VVV+ +ATV DLK  I
Sbjct: 2   VVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAI 61

Query: 105 KKKVTEMEQSHMGHRHISWYY 126
           ++ V   ++   G +HISW Y
Sbjct: 62  QRYVQLRQEREGGIQHISWSY 82
[Close]
BLAST of Spo24902.1 vs. TAIR (Arabidopsis)
Match: AT3G07860.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.000e-30
Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 1 

		  

Query: 34  KRAKLNSTLAALLDDPILSDVPKKPSLSDVDTLISLELGSAMRISVLKLDSTSFDVVVMN 93
           KR KL S L+ LL DPIL+DVP+ P+LSDV TL+SLE GSAMR+SV+KLD +S DV VMN
Sbjct: 11  KREKLKSVLSQLLADPILADVPRNPTLSDVVTLVSLEKGSAMRLSVVKLDGSSLDVAVMN 70

Query: 94  SATVKDLKLCIKKKVTEMEQSHMGHRHISWYYSLSCF 131
           SAT+KDLKL IKKKV EMEQ++MGHRHISW +  S F
Sbjct: 71  SATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNF 107
The following BLAST results are available for this feature:
BLAST of Spo24902.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902143828|gb|KNA04876.1|4.0e-6999.3hypothetical protein SOVF_1956... [more]
gi|976920429|gb|KVI05156.1|3.1e-3782.0hypothetical protein Ccrd_0164... [more]
gi|731361663|ref|XP_010692484.1|3.1e-3774.0PREDICTED: U11/U12 small nucle... [more]
gi|590594717|ref|XP_007017930.1|7.6e-3682.6Ubiquitin-like superfamily pro... [more]
gi|590594714|ref|XP_007017929.1|7.6e-3682.6Ubiquitin-like superfamily pro... [more]
back to top
BLAST of Spo24902.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QEA8_SPIOL2.8e-6999.3Uncharacterized protein OS=Spi... [more]
A0A103Y9T9_CYNCS2.1e-3782.0Uncharacterized protein OS=Cyn... [more]
A0A0J8BI80_BETVU2.1e-3774.0Uncharacterized protein OS=Bet... [more]
A0A061FCZ7_THECC5.3e-3682.6Ubiquitin-like superfamily pro... [more]
A0A061FL17_THECC5.3e-3682.6Ubiquitin-like superfamily pro... [more]
back to top
BLAST of Spo24902.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
U1125_ARATH1.8e-2970.1U11/U12 small nuclear ribonucl... [more]
SNR25_HUMAN3.2e-1042.8U11/U12 small nuclear ribonucl... [more]
SNR25_MOUSE4.6e-940.7U11/U12 small nuclear ribonucl... [more]
SNR25_BOVIN4.6e-940.7U11/U12 small nuclear ribonucl... [more]
back to top
BLAST of Spo24902.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G07860.11.0e-3070.1Ubiquitin-like superfamily pro... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 69..125
score: 2.1
NoneNo IPR availablePANTHERPTHR14942FAMILY NOT NAMEDcoord: 28..125
score: 7.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0048653 anther development
biological_process GO:0042545 cell wall modification
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0019643 reductive tricarboxylic acid cycle
biological_process GO:0009651 response to salt stress
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0009932 cell tip growth
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0006073 cellular glucan metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0006457 protein folding
biological_process GO:0009825 multidimensional cell growth
biological_process GO:0008380 RNA splicing
biological_process GO:0030048 actin filament-based movement
biological_process GO:0051646 mitochondrion localization
biological_process GO:0060151 peroxisome localization
biological_process GO:0007018 microtubule-based movement
biological_process GO:0006972 hyperosmotic response
biological_process GO:0006396 RNA processing
biological_process GO:0030001 metal ion transport
biological_process GO:0007030 Golgi organization
biological_process GO:0009409 response to cold
biological_process GO:0016070 RNA metabolic process
biological_process GO:0009740 gibberellic acid mediated signaling pathway
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0001510 RNA methylation
biological_process GO:0043481 anthocyanin accumulation in tissues in response to UV light
biological_process GO:0007049 cell cycle
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process GO:0009744 response to sucrose
biological_process GO:0009611 response to wounding
biological_process GO:0016246 RNA interference
biological_process GO:0009863 salicylic acid mediated signaling pathway
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0080001 mucilage extrusion from seed coat
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0048359 mucilage metabolic process involved in seed coat development
biological_process GO:0043086 negative regulation of catalytic activity
biological_process GO:0006508 proteolysis
biological_process GO:0006952 defense response
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006378 mRNA polyadenylation
biological_process GO:0048571 long-day photoperiodism
biological_process GO:0042742 defense response to bacterium
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0009987 cellular process
biological_process GO:0008152 metabolic process
biological_process GO:0006996 organelle organization
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006479 protein methylation
biological_process GO:0006421 asparaginyl-tRNA aminoacylation
biological_process GO:0048825 cotyledon development
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0009853 photorespiration
biological_process GO:0071215 cellular response to abscisic acid stimulus
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0042256 mature ribosome assembly
biological_process GO:0042273 ribosomal large subunit biogenesis
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0000271 polysaccharide biosynthetic process
biological_process GO:0051645 Golgi localization
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0008361 regulation of cell size
biological_process GO:0007389 pattern specification process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009926 auxin polar transport
biological_process GO:0008356 asymmetric cell division
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0010015 root morphogenesis
biological_process GO:0019722 calcium-mediated signaling
biological_process GO:0007267 cell-cell signaling
biological_process GO:0006949 syncytium formation
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0008284 positive regulation of cell proliferation
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0080119 ER body organization
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006412 translation
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006833 water transport
biological_process GO:0006544 glycine metabolic process
biological_process GO:0019877 diaminopimelate biosynthetic process
biological_process GO:0051258 protein polymerization
biological_process GO:0046686 response to cadmium ion
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0048767 root hair elongation
biological_process GO:0010162 seed dormancy process
biological_process GO:0009088 threonine biosynthetic process
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0034969 histone arginine methylation
biological_process GO:0016126 sterol biosynthetic process
cellular_component GO:0031429 box H/ACA snoRNP complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane
cellular_component GO:0030127 COPII vesicle coat
cellular_component GO:0005773 vacuole
cellular_component GO:0005634 nucleus
cellular_component GO:0005730 nucleolus
cellular_component GO:0000932 P-body
cellular_component GO:0005829 cytosol
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009316 3-isopropylmalate dehydratase complex
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0044424 intracellular part
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0016020 membrane
cellular_component GO:0045254 pyruvate dehydrogenase complex
cellular_component GO:0005874 microtubule
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005618 cell wall
cellular_component GO:0048046 apoplast
cellular_component GO:0005737 cytoplasm
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005200 structural constituent of cytoskeleton
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0030247 polysaccharide binding
molecular_function GO:0005179 hormone activity
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0042973 glucan endo-1,3-beta-D-glucosidase activity
molecular_function GO:0016762 xyloglucan:xyloglucosyl transferase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity
molecular_function GO:0050661 NADP binding
molecular_function GO:0051287 NAD binding
molecular_function GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity
molecular_function GO:0004073 aspartate-semialdehyde dehydrogenase activity
molecular_function GO:0008469 histone-arginine N-methyltransferase activity
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008840 4-hydroxy-tetrahydrodipicolinate synthase
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0042802 identical protein binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0043022 ribosome binding
molecular_function GO:0043023 ribosomal large subunit binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004816 asparagine-tRNA ligase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0050486 intramolecular transferase activity, transferring hydroxy groups
molecular_function GO:0005524 ATP binding
molecular_function GO:0003994 aconitate hydratase activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0003861 3-isopropylmalate dehydratase activity
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0031369 translation initiation factor binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo112880.98Barchart | Table
Spo035270.82Barchart | Table
Spo143800.82Barchart | Table
Spo019990.82Barchart | Table
Spo086910.81Barchart | Table
Spo029280.80Barchart | Table
Spo069040.78Barchart | Table
Spo230380.78Barchart | Table
Spo194410.78Barchart | Table
Spo121910.78Barchart | Table
Spo206470.77Barchart | Table
Spo176620.77Barchart | Table
Spo225050.77Barchart | Table
Spo059090.76Barchart | Table
Spo249180.76Barchart | Table
Spo070160.76Barchart | Table
Spo056940.76Barchart | Table
Spo236220.75Barchart | Table
Spo189010.75Barchart | Table
Spo156410.75Barchart | Table
Spo134810.75Barchart | Table
Spo070170.75Barchart | Table
Spo253060.74Barchart | Table
Spo050640.74Barchart | Table
Spo035730.74Barchart | Table
Spo192360.74Barchart | Table
Spo179030.74Barchart | Table
Spo023970.74Barchart | Table
Spo267260.73Barchart | Table
Spo036260.73Barchart | Table
Spo118500.73Barchart | Table
Spo232200.73Barchart | Table
Spo256350.73Barchart | Table
Spo051140.72Barchart | Table
Spo159390.72Barchart | Table
Spo151600.72Barchart | Table
Spo199700.72Barchart | Table
Spo078210.71Barchart | Table
Spo045270.71Barchart | Table
Spo101470.71Barchart | Table
Spo093760.71Barchart | Table
Spo105970.71Barchart | Table
Spo217640.71Barchart | Table
Spo222820.70Barchart | Table
Spo224010.70Barchart | Table
Spo209970.70Barchart | Table
Spo137940.70Barchart | Table
Spo039790.70Barchart | Table
Spo031310.70Barchart | Table
Spo229360.70Barchart | Table
Spo229390.70Barchart | Table
Spo230010.70Barchart | Table
Spo103900.70Barchart | Table
Spo159610.70Barchart | Table
Spo116430.70Barchart | Table
Spo022180.69Barchart | Table
Spo211860.69Barchart | Table
Spo047550.69Barchart | Table
Spo063180.69Barchart | Table
Spo126810.69Barchart | Table
Spo132790.69Barchart | Table
Spo136210.69Barchart | Table
Spo076680.69Barchart | Table
Spo148750.69Barchart | Table
Spo163670.69Barchart | Table
Spo015350.69Barchart | Table
Spo202840.69Barchart | Table
Spo062820.69Barchart | Table
Spo264880.68Barchart | Table
Spo243950.68Barchart | Table
Spo000550.68Barchart | Table
Spo204600.68Barchart | Table
Spo210680.68Barchart | Table
Spo223940.68Barchart | Table
Spo050900.68Barchart | Table
Spo043900.68Barchart | Table
Spo174950.68Barchart | Table
Spo003630.67Barchart | Table
Spo248740.67Barchart | Table
Spo088160.67Barchart | Table
Spo105530.67Barchart | Table
Spo182210.67Barchart | Table
Spo187190.67Barchart | Table
Spo052440.67Barchart | Table
Spo230700.67Barchart | Table
Spo247750.67Barchart | Table
Spo074170.67Barchart | Table
Spo225780.66Barchart | Table
Spo074020.66Barchart | Table
Spo046670.66Barchart | Table
Spo144040.66Barchart | Table
Spo145130.66Barchart | Table
Spo147540.66Barchart | Table
Spo157110.66Barchart | Table
Spo172710.66Barchart | Table
Spo033150.66Barchart | Table
Spo182120.66Barchart | Table
Spo025180.66Barchart | Table
Spo240010.66Barchart | Table
Spo010610.66Barchart | Table
Spo253490.66Barchart | Table
Spo234980.65Barchart | Table
Spo013980.65Barchart | Table
Spo097110.65Barchart | Table
Spo037010.65Barchart | Table
Spo150500.65Barchart | Table
Spo263750.65Barchart | Table
Spo071450.65Barchart | Table
Spo252060.65Barchart | Table
Spo105990.65Barchart | Table
Spo056320.65Barchart | Table
Spo105650.65Barchart | Table
Spo028380.65Barchart | Table
Spo029420.65Barchart | Table
Spo188740.65Barchart | Table