Spo24783 (gene)

Overview
NameSpo24783
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 5451603 .. 5452007 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTCCATACACAACCCTATCGTAGTGACTACTACACAACCCATGGCCACATTTGCAACCTCAACGACGTCGTCCCTCGTTATCCGAGTCTTTACGACAACGATATCGGGTCGGGTTATGAGGACGAGGATGGAGTAATTCATATCGAGCACCACCACCACCCCCAACACCACGTGCCGGAGGTGGTTCAAGCGGCTCGCCACCACGGCCACCACCCTAGGGTTCGCTTCGTGGATTTCGTGGAGCCGAATAATGGTGAAAGAAAGGCGGTCAAGTTCGCCAATAGGGATAATGAGGAGAAATTGGGTGTTATAAGGAGTGTTGATGATGCAGCAGATGGGTTCATTAAGGCTAAGCATAGGGGGTTTGGGCTTCGTCATTGGAAGACTTTCAGAATGTGA

mRNA sequence

ATGGCCTTCCATACACAACCCTATCGTAGTGACTACTACACAACCCATGGCCACATTTGCAACCTCAACGACGTCGTCCCTCGTTATCCGAGTCTTTACGACAACGATATCGGGTCGGGTTATGAGGACGAGGATGGAGTAATTCATATCGAGCACCACCACCACCCCCAACACCACGTGCCGGAGGTGGTTCAAGCGGCTCGCCACCACGGCCACCACCCTAGGGTTCGCTTCGTGGATTTCGTGGAGCCGAATAATGGTGAAAGAAAGGCGGTCAAGTTCGCCAATAGGGATAATGAGGAGAAATTGGGTGTTATAAGGAGTGTTGATGATGCAGCAGATGGGTTCATTAAGGCTAAGCATAGGGGGTTTGGGCTTCGTCATTGGAAGACTTTCAGAATGTGA

Coding sequence (CDS)

ATGGCCTTCCATACACAACCCTATCGTAGTGACTACTACACAACCCATGGCCACATTTGCAACCTCAACGACGTCGTCCCTCGTTATCCGAGTCTTTACGACAACGATATCGGGTCGGGTTATGAGGACGAGGATGGAGTAATTCATATCGAGCACCACCACCACCCCCAACACCACGTGCCGGAGGTGGTTCAAGCGGCTCGCCACCACGGCCACCACCCTAGGGTTCGCTTCGTGGATTTCGTGGAGCCGAATAATGGTGAAAGAAAGGCGGTCAAGTTCGCCAATAGGGATAATGAGGAGAAATTGGGTGTTATAAGGAGTGTTGATGATGCAGCAGATGGGTTCATTAAGGCTAAGCATAGGGGGTTTGGGCTTCGTCATTGGAAGACTTTCAGAATGTGA

Protein sequence

MAFHTQPYRSDYYTTHGHICNLNDVVPRYPSLYDNDIGSGYEDEDGVIHIEHHHHPQHHVPEVVQAARHHGHHPRVRFVDFVEPNNGERKAVKFANRDNEEKLGVIRSVDDAADGFIKAKHRGFGLRHWKTFRM
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24783.1Spo24783.1mRNA


Homology
[Close]
BLAST of Spo24783.1 vs. NCBI nr
Match: gi|902220212|gb|KNA18523.1| (hypothetical protein SOVF_069920 [Spinacia oleracea])

HSP 1 Score: 286.6 bits (732), Expect = 2.300e-74
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 1 

		  

Query: 1   MAFHTQPYRSDYYTTHGHICNLNDVVPRYPSLYDNDIGSGYEDEDGVIHIEHHHHPQHHV 60
           MAFHTQPYRSDYYTTHGHICNLNDVVPRYPSLYDNDIGSGYEDEDGVIHIEHHHHPQHHV
Sbjct: 1   MAFHTQPYRSDYYTTHGHICNLNDVVPRYPSLYDNDIGSGYEDEDGVIHIEHHHHPQHHV 60

Query: 61  PEVVQAARHHGHHPRVRFVDFVEPNNGERKAVKFANRDNEEKLGVIRSVDDAADGFIKAK 120
           PEVVQAARHHGHHPR RFVDFVEPNNGERKAVKFANRDNEEKLGVIRSVDDAADGFIKAK
Sbjct: 61  PEVVQAARHHGHHPRARFVDFVEPNNGERKAVKFANRDNEEKLGVIRSVDDAADGFIKAK 120

Query: 121 HRGFGLRHWKTFRM 135
           HRGFGLRHWKTFRM
Sbjct: 121 HRGFGLRHWKTFRM 134
[Close]
BLAST of Spo24783.1 vs. NCBI nr
Match: gi|870859242|gb|KMT10706.1| (hypothetical protein BVRB_5g118150 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 95.5 bits (236), Expect = 7.500e-17
Identity = 60/123 (48.78%), Postives = 73/123 (59.35%), Query Frame = 1 

		  

Query: 16  HGHICNLNDVVPRYPSLYDNDIGSGYEDEDGVIHIEHHHHPQHH--VPEVVQAARHHGHH 75
           H H   L DV PRYPS+Y + I S +ED DG+IHIEH H   HH  +P+  Q        
Sbjct: 27  HAHNTGLEDV-PRYPSVYRDVIESSHEDGDGIIHIEHQHQHHHHQHLPKATQ-------- 86

Query: 76  PRVRFVDFVEPNNGE--RKAVKFANRDNEEKLGVIRSVDDAADGFIKAKHRGFGLRHWKT 135
           PR + V F E ++     K +K       +K GVIRSVDDAADGFIKA HR F LR+W T
Sbjct: 87  PRRQRVHFAEESSDACVHKLIK-------DKGGVIRSVDDAADGFIKANHRCFELRNWNT 133
[Close]
BLAST of Spo24783.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RGA8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_069920 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 1.600e-74
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 1 

		  

Query: 1   MAFHTQPYRSDYYTTHGHICNLNDVVPRYPSLYDNDIGSGYEDEDGVIHIEHHHHPQHHV 60
           MAFHTQPYRSDYYTTHGHICNLNDVVPRYPSLYDNDIGSGYEDEDGVIHIEHHHHPQHHV
Sbjct: 1   MAFHTQPYRSDYYTTHGHICNLNDVVPRYPSLYDNDIGSGYEDEDGVIHIEHHHHPQHHV 60

Query: 61  PEVVQAARHHGHHPRVRFVDFVEPNNGERKAVKFANRDNEEKLGVIRSVDDAADGFIKAK 120
           PEVVQAARHHGHHPR RFVDFVEPNNGERKAVKFANRDNEEKLGVIRSVDDAADGFIKAK
Sbjct: 61  PEVVQAARHHGHHPRARFVDFVEPNNGERKAVKFANRDNEEKLGVIRSVDDAADGFIKAK 120

Query: 121 HRGFGLRHWKTFRM 135
           HRGFGLRHWKTFRM
Sbjct: 121 HRGFGLRHWKTFRM 134
[Close]
BLAST of Spo24783.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F4I5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118150 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.200e-17
Identity = 60/123 (48.78%), Postives = 73/123 (59.35%), Query Frame = 1 

		  

Query: 16  HGHICNLNDVVPRYPSLYDNDIGSGYEDEDGVIHIEHHHHPQHH--VPEVVQAARHHGHH 75
           H H   L DV PRYPS+Y + I S +ED DG+IHIEH H   HH  +P+  Q        
Sbjct: 27  HAHNTGLEDV-PRYPSVYRDVIESSHEDGDGIIHIEHQHQHHHHQHLPKATQ-------- 86

Query: 76  PRVRFVDFVEPNNGE--RKAVKFANRDNEEKLGVIRSVDDAADGFIKAKHRGFGLRHWKT 135
           PR + V F E ++     K +K       +K GVIRSVDDAADGFIKA HR F LR+W T
Sbjct: 87  PRRQRVHFAEESSDACVHKLIK-------DKGGVIRSVDDAADGFIKANHRCFELRNWNT 133
The following BLAST results are available for this feature:
BLAST of Spo24783.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902220212|gb|KNA18523.1|2.3e-7499.2hypothetical protein SOVF_0699... [more]
gi|870859242|gb|KMT10706.1|7.5e-1748.7hypothetical protein BVRB_5g11... [more]
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BLAST of Spo24783.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RGA8_SPIOL1.6e-7499.2Uncharacterized protein OS=Spi... [more]
A0A0J8F4I5_BETVU5.2e-1748.7Uncharacterized protein OS=Bet... [more]
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BLAST of Spo24783.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24783.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0061025 membrane fusion
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016049 cell growth
biological_process GO:0009853 photorespiration
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0006121 mitochondrial electron transport, succinate to ubiquinone
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0045281 succinate dehydrogenase complex
molecular_function GO:0003924 GTPase activity
molecular_function GO:0019003 GDP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008177 succinate dehydrogenase (ubiquinone) activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0051538 3 iron, 4 sulfur cluster binding
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0005525 GTP binding
RNA-Seq Expression