Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATACTGTACAAAGGAGGCGATATAGATTTTCCATCGTGGCGCATAACACAACAATAAAAAGTTAGATAAGTAAAGCATATGATCCTCCTTCAATTCAATAATACAGATTACAGCACACAAGATCAGGAATTGCAGTGACAGTATATCATCCGCCTACGCAACCGCAAAACCACCTGCCAGAAACGCCCATCACCAGACGTTTAAAGCACCACTTTGAACCTAAAGCAGTAAAGCATAATCACCACCTTTTCTCCACTCCCTTTCATTTCTCCTCTTTATATACTCTTCTATTACTTGCTAAATTCTCACAATCAATCAATCAATCAATCGTAAGCAAAATCCGAATTTAGGAAAGAGAAAAATCCGAGGTTTTTTAACAATGGCGGCGGTGTCTGAGAAACCAATTATGTTGATTGGAATTGACGAGAGTGACCAGAGTTCTTATGCTTTGGAATGGGCTATTGAACATTTCTTCACCCCTTTTGCTCCTAATTTCCCTTTCAAGCTTTTTCTGGTTCATGCTAAACCTACTCCTATGACTGCTATTGGCTTTGCTGGTCCGGGTATAATTTCCTTTTCATTTCCCTAATTTTGATTTAATTCTGTTCATTTTATTTGAATTTTGGGTTGTTGGTTTACAGCTTTGATTTTAGATTTTATTCTGTGTTATTGATCATCGATGTATTAGTAATTGTTTTTTATGTTGTTACTGTTAGTAACTTATTGAATATCTTTTCGATTTTTTGTACGATTCGTTTGCTATTGATAATCTGTGTATTAGTAATTACTCCCTAGTTAGCTAGCATCTTTTGTTGCTGTTACGGCTCATGCGTTCTTATTAATCATCTGTTGATTGGAATTCTTTTTAGTGTTGTCATGATTAGTGAATTATTGATCATCCTTGTGGGTTATTGGATTATTAGCATGGTTATTATTATGGTTTTCAATTTTGTCACTGTTTCTGTGTTATTCCTCATTCGTGTATTAGCATTAATCATAAATTACTGAACTGGATAGTGTACTTTTGCAGTTGTGCTTAGCTTTTGAATTGATTTTGGCTAATTACAGGTTGATATTAAGTTGTGCTTGAGTTTCTGTGAAGGTTTTGGATACTAGAGTTCTTTTTATCCTGGTTTTTGTGCACTACTCCCTCCGTATTTATTTAAGAGATACATTTGATCGGGCACGGGTATCAAGAAGAAGAATTGAATGAAATAAAGTAATAAAATAAGTGGGGTTGGTTAGATATTTTAATAGGTAAAACAAGTGAGGATCATGTCATTTTAGGAGGTGGGTGTGAGAGTGGGGTGTGGATAGATTATTTAATTAGATGGTGGGGTTGATAAGTTACTAAAAATGGCAAGTGTATCTCTTAAATAAATACGGCCGAAAAAGACAAGTGTATCCTTAAATAAATACAGAGGGAGTATAAGATTATGTACGAAGGATTTTGTATGCTCCATGTAAAATTTGGAATGAATGATGTTTAATTGCAAGTGCATCGATGTTGAAGTTGGTAGGATGTTGAGTTAATTTCAATTCCCAGTAGTGGTGAGTATTAAGAGAAGCTACATAACATAGTAGTATAGCATGTAGCTTCCACTGTCCCCTGGTATTTTCATAATCTCAAATTTTGCATGAAAACTAGGGAACTTGAAAGCTCAAATTTTTAAGGCGAACCTTGTATTAAACCGGTGTATTGTACGAGTATGTAAGGAACTTAATCACTCCAATCACTTTCAAGTCGTTTTTACAAAGAGTTGACATTATATGACTTAGGATGACTAAACTTGTTGTCTAACACTTTTACTTTGGGAACCTTATAATTACTACACTTGTTGAATTGGTCCACAACTCTATGAGGCTAGGGTGGACTGAACAAATTCAAGTTAAGTTAGGACGTAGGAATATGGAGGTTGGTGTGGAATGAATCCTATGTAAGAGATGGAAGTAAAATGCGGAGACCGGATTCTAATATCTTAGTGGTGATCATCTCGTATTCTTGTCATGAGATGTAGGCTATCCAAACTCCAACACCTGCTTATGGTCATTAGACGTTGGCATATTTTGCGGGCAATAGGTAGAGCCTAAATACAAAATCTCGAGGTCAAGAAAATGCGTACTCAACCTGTTTTGTACGGAGTACTATTCTATTTCGGATCCAAAAATTGTGTTTAAGTTTCTGGTAATCTGACACAAATAAGTAAATACAGGGTTCTTTGATCTATTTAATTATTAAATTTGACTGAAATTCTCACACTATACAGTCTTGCATGAACTTATGTCTGAATATTGAAATATGTACTCTTGTTAGTCCTGTTTTCATGTTTGTTTGCACTTTAACACAACATGGCTCAGAAACAATGATAAATGCAACATGCAAGCAGAGATTCAAGTTCCTGGTGGGAAGAAGATTGTATATTTGATTGGTTTTATATTGGTTTGCCGATTTGAGTAGATTGTTTACTGCCTTGTGATTATTTTTCTTGTATCATGAATTGCAGGAGGATCGGAAATTCTGCCCTACGTGGACACTGATCTGAAGAAAATAGCTGCCAGGGTCATTGAGAAGGCTAAAGACTTGTGCCACTCCAAATCGGTATTATAATTTTTTATATTTATTGAAAGCACTTCTATTAAGCGGCTGTTGATGATTATAGTTTGAGATTTTCTTACTGCATCACACCCTGCATAACTCCATCTGTCTTAAATATTACTCCGTATTCAGTTTCTGCAATTTGCTCTAAGTTATTGTGTGTCTTCAAACACACGAAAGATATGGACTGAATGTTAGGCACATCTCAGTCTCTCAACCAAAATTCATACTCCCTAAACTAATAGTCTAATAGAGTGCTAAGTCTAAAACTATGAACTCTAAGTCTCTTAGCGACCTAAATTTGAAGTAAGAAAGGTTTCGAAACTCTGGGTTGGGAAGGTGAAAAAACTAAACAAATAATATCACCAATTCTGAAATTATTACGGAGTACATTAATTTGGCTTTTATACCTAGTGGTTTCATACTCCAATGCTGAAGCAACTTTCCTGAGATCCGTATAATCGAACATAAAAACATTGTATGCTGGCTGTCTCCTTACCCTCACCGCGCTGTAGTTTAAATAGTGAGTAATTAAGCTGCACCCAATATTGAAATAATACTACTTTTGTTACGTACAAGGCCTCCAACTTGTTGCTTCTCTTGATCAAACACCAATGCATGGTTGCCCAAGCAACTCATAGTAAGCAAGGGTGCTACTAACTTGCTGCAAAGCTGTGACAATGCAGCGGGTTTCGCTCTTAATCTACGTAGGAGATTCTTTAATGCGAATCAACCCACAATTATGCTAAGCAACACATATCCTCGTAAAAATTCGCTTATAGCTTCTGTAACAAGAAAATACCCACATTCAGAACAGTTTTCAAAGAGCCAAGAAACAGAATAGGCACTAGTGAAAGTGACAAAGAACCAAACCCAAGATTTTAAGGTACCAGTCAAGAACCATTTAAGCGGGGAGAATCGCACAAAAGTTTACACACACCAATTAAAATTGAAAAATATTTGGTGGCATATCCTTGGGAAGATTTGATTTATAATTTCTTTTCCATCCTGCTTGACTCAGTTATACTGTATCTTTGACAGAAAGAAGTCAATTAATGTTGTCTTAACTCTTAAGCTTCATTCCTACTGCATTAAATGTGGTAAACTGTAGCTGCAATGGTAACAAAAGGAACTTTCGTTGAAACCTGCTGTTCTGTCTTAGGCTCCGTTTGGTAGGGCGTAAAACGTTTTCATGAAAAACGATTTTCCCCTTTTTAATCATTTTACGTTGTTTGGTTGGGTGAGGGATGTAAAACAATTTTACATGACTCCCTCAAAGGTGTAAAACCTTTTTCCATTTGAAAGGGAGGGAAACCACTTTTCCTTTTTTCCTCCTTACCTCTCTCTCCTTTCTTCCCCTCAATCTTCACCATCTTCTCCCATTTTCCTTTAAGTTACCAAACAAAGGAAAACTAGTTTGGAATTGTGTTTTCCCTTGAAAAATGTTACGCCCTACCAAACGGAGCCTTAATGGGTCGCACCATCTCCAGAAAGAAACTGAGATATCTTATCTTCTGCCAACTCTTGATTTTAAATACTGTAGCATAGTCTAGTCGCATTAAAAAACAAATGTTACAAGGTCTTGTGAACATTTAGTAAACAAGGCAAGGAACCCCTTGTTTGCAAATTGCGTGGCATCTTAATTTGCATGTCTTTGTTCACTCCTAAGCTGTTTACTGACGGGAATCCTATATTCCGAACTAGGACGAGGTCGTTTCTTACACATTTGTTGATTTAGTATACTTTTGAAAAGTTGCAAACTGCTGCTACACGAGTCTTCATTACTTGTTTGCTTTAAAATTTAGACTCATGAGGCGTCTGAAATTCATGGAATTTATTTTTGCTCCAGTTACATGATGTTACCATAGAAGTTGTGGAAGGTGATGCTAGGAATGTTCTCTGTGATGCTGTTGAGAAGCACCATGCGGCGATGCTGGTTGTCGGTAGTCATGGCTATGGAGCGATTAAAAGGTAGGTTGCTTCATATTTACATGCATGCAACTTTTAGGCACTCTGTTTTTCAACTTGTTAAGGAAAAATACTGGTTAGTTAAGCCTTAAAATTAGTCTACGATTGCACTCTGTGTTATCTGCTGCAGTAATGACACTTTCAAATTGAAAGTTTAAACTAACTAAACTTGTTCCATGAAGCATGCTAACTGGAGCTTTGTGGAAAGACGAACTCCTACCAGATAAATTGATCATGAAGAGTAACTGATGTTACTTTTAATTTTGTTACAGGGCCGTTCTTGGAAGCGTAAGTGATTACTGTGCTCATCACGCTCATTGCTCAGTAATGATTGTCAAAAGGCCAAAGATCAAGCACTAAATTTCTTTATGGAACTTTATTTCGATGGATGTTGATATGCAAGCATGAACTGCCCCTCATTCATAATATTTATTTGTGTGTAATAATTATTTTACAATCTTGTGGTTTAGAGCGTGATCAAGTATAAATAGGAGAATCATACACATGGATAATTGTGTGTTGAATGATTAGGCGATAATCCTTTGTAATCCACCCCTCAACTTTCCGGAGGAACATATATTTGGTAAGCTCTGCCTAGAAGGGTTACCTAATTCTGTATTTTTTTTCATTATCTTATAAATAAATGCGTTTAATAGTATATTTAAATGAAAATCCATTGTCGCAACGAAAAAAT GATACTGTACAAAGGAGGCGATATAGATTTTCCATCGTGGCGCATAACACAACAATAAAAAGTTAGATAAGTAAAGCATATGATCCTCCTTCAATTCAATAATACAGATTACAGCACACAAGATCAGGAATTGCAGTGACAGTATATCATCCGCCTACGCAACCGCAAAACCACCTGCCAGAAACGCCCATCACCAGACGTTTAAAGCACCACTTTGAACCTAAAGCAGTAAAGCATAATCACCACCTTTTCTCCACTCCCTTTCATTTCTCCTCTTTATATACTCTTCTATTACTTGCTAAATTCTCACAATCAATCAATCAATCAATCGTAAGCAAAATCCGAATTTAGGAAAGAGAAAAATCCGAGGTTTTTTAACAATGGCGGCGGTGTCTGAGAAACCAATTATGTTGATTGGAATTGACGAGAGTGACCAGAGTTCTTATGCTTTGGAATGGGCTATTGAACATTTCTTCACCCCTTTTGCTCCTAATTTCCCTTTCAAGCTTTTTCTGGTTCATGCTAAACCTACTCCTATGACTGCTATTGGCTTTGCTGGTCCGGGAGGATCGGAAATTCTGCCCTACGTGGACACTGATCTGAAGAAAATAGCTGCCAGGGTCATTGAGAAGGCTAAAGACTTGTGCCACTCCAAATCGTTACATGATGTTACCATAGAAGTTGTGGAAGGTGATGCTAGGAATGTTCTCTGTGATGCTGTTGAGAAGCACCATGCGGCGATGCTGGTTGTCGGTAGTCATGGCTATGGAGCGATTAAAAGGGCCGTTCTTGGAAGCGTAAGTGATTACTGTGCTCATCACGCTCATTGCTCAGTAATGATTGTCAAAAGGCCAAAGATCAAGCACTAAATTTCTTTATGGAACTTTATTTCGATGGATGTTGATATGCAAGCATGAACTGCCCCTCATTCATAATATTTATTTGTGTGTAATAATTATTTTACAATCTTGTGGTTTAGAGCGTGATCAAGTATAAATAGGAGAATCATACACATGGATAATTGTGTGTTGAATGATTAGGCGATAATCCTTTGTAATCCACCCCTCAACTTTCCGGAGGAACATATATTTGGTAAGCTCTGCCTAGAAGGGTTACCTAATTCTGTATTTTTTTTCATTATCTTATAAATAAATGCGTTTAATAGTATATTTAAATGAAAATCCATTGTCGCAACGAAAAAAT ATGGCGGCGGTGTCTGAGAAACCAATTATGTTGATTGGAATTGACGAGAGTGACCAGAGTTCTTATGCTTTGGAATGGGCTATTGAACATTTCTTCACCCCTTTTGCTCCTAATTTCCCTTTCAAGCTTTTTCTGGTTCATGCTAAACCTACTCCTATGACTGCTATTGGCTTTGCTGGTCCGGGAGGATCGGAAATTCTGCCCTACGTGGACACTGATCTGAAGAAAATAGCTGCCAGGGTCATTGAGAAGGCTAAAGACTTGTGCCACTCCAAATCGTTACATGATGTTACCATAGAAGTTGTGGAAGGTGATGCTAGGAATGTTCTCTGTGATGCTGTTGAGAAGCACCATGCGGCGATGCTGGTTGTCGGTAGTCATGGCTATGGAGCGATTAAAAGGGCCGTTCTTGGAAGCGTAAGTGATTACTGTGCTCATCACGCTCATTGCTCAGTAATGATTGTCAAAAGGCCAAAGATCAAGCACTAA MAAVSEKPIMLIGIDESDQSSYALEWAIEHFFTPFAPNFPFKLFLVHAKPTPMTAIGFAGPGGSEILPYVDTDLKKIAARVIEKAKDLCHSKSLHDVTIEVVEGDARNVLCDAVEKHHAAMLVVGSHGYGAIKRAVLGSVSDYCAHHAHCSVMIVKRPKIKH Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo24747.1 vs. NCBI nr
Match: gi|902214269|gb|KNA17455.1| (hypothetical protein SOVF_079810 [Spinacia oleracea]) HSP 1 Score: 332.4 bits (851), Expect = 4.400e-88 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1
BLAST of Spo24747.1 vs. NCBI nr
Match: gi|731346556|ref|XP_010684515.1| (PREDICTED: uncharacterized protein LOC104899079 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 296.2 bits (757), Expect = 3.500e-77 Identity = 140/158 (88.61%), Postives = 152/158 (96.20%), Query Frame = 1
BLAST of Spo24747.1 vs. NCBI nr
Match: gi|542600619|gb|AGV40783.1| (universal stress protein [Salicornia brachiata]) HSP 1 Score: 284.6 bits (727), Expect = 1.000e-73 Identity = 129/160 (80.62%), Postives = 152/160 (95.00%), Query Frame = 1
BLAST of Spo24747.1 vs. NCBI nr
Match: gi|922474295|ref|XP_013636007.1| (PREDICTED: universal stress protein A-like protein [Brassica oleracea var. oleracea]) HSP 1 Score: 268.1 bits (684), Expect = 1.000e-68 Identity = 121/162 (74.69%), Postives = 143/162 (88.27%), Query Frame = 1
BLAST of Spo24747.1 vs. NCBI nr
Match: gi|923814154|ref|XP_013691814.1| (PREDICTED: universal stress protein A-like protein [Brassica napus]) HSP 1 Score: 265.4 bits (677), Expect = 6.600e-68 Identity = 120/162 (74.07%), Postives = 143/162 (88.27%), Query Frame = 1
BLAST of Spo24747.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RDA6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079810 PE=4 SV=1) HSP 1 Score: 332.4 bits (851), Expect = 3.100e-88 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1
BLAST of Spo24747.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C1C4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g164700 PE=4 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 2.400e-77 Identity = 140/158 (88.61%), Postives = 152/158 (96.20%), Query Frame = 1
BLAST of Spo24747.1 vs. UniProtKB/TrEMBL
Match: T2D2Q9_9CARY (Universal stress protein OS=Salicornia brachiata GN=USP PE=2 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 7.300e-74 Identity = 129/160 (80.62%), Postives = 152/160 (95.00%), Query Frame = 1
BLAST of Spo24747.1 vs. UniProtKB/TrEMBL
Match: A0A0D3BNJ1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 7.100e-69 Identity = 121/162 (74.69%), Postives = 143/162 (88.27%), Query Frame = 1
BLAST of Spo24747.1 vs. UniProtKB/TrEMBL
Match: A0A078IUA1_BRANA (BnaC04g00160D protein OS=Brassica napus GN=BnaC04g00160D PE=4 SV=1) HSP 1 Score: 265.4 bits (677), Expect = 4.600e-68 Identity = 120/162 (74.07%), Postives = 143/162 (88.27%), Query Frame = 1
BLAST of Spo24747.1 vs. ExPASy Swiss-Prot
Match: PHO34_ARATH (Universal stress protein PHOS34 OS=Arabidopsis thaliana GN=PHOS34 PE=1 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 3.000e-12 Identity = 48/164 (29.27%), Postives = 82/164 (50.00%), Query Frame = 1
BLAST of Spo24747.1 vs. ExPASy Swiss-Prot
Match: PHO32_ARATH (Universal stress protein PHOS32 OS=Arabidopsis thaliana GN=PHOS32 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 4.300e-11 Identity = 47/160 (29.38%), Postives = 79/160 (49.38%), Query Frame = 1
BLAST of Spo24747.1 vs. ExPASy Swiss-Prot
Match: Y531_METJA (Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0531 PE=3 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.900e-7 Identity = 40/150 (26.67%), Postives = 75/150 (50.00%), Query Frame = 1
BLAST of Spo24747.1 vs. ExPASy Swiss-Prot
Match: Y2026_MYCTU (Universal stress protein Rv2026c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv2026c PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 8.400e-7 Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
BLAST of Spo24747.1 vs. ExPASy Swiss-Prot
Match: Y2026_MYCTO (Universal stress protein MT2085 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT2085 PE=3 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 8.400e-7 Identity = 50/160 (31.25%), Postives = 80/160 (50.00%), Query Frame = 1
BLAST of Spo24747.1 vs. TAIR (Arabidopsis)
Match: AT2G47710.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 248.4 bits (633), Expect = 2.900e-66 Identity = 109/161 (67.70%), Postives = 138/161 (85.71%), Query Frame = 1
BLAST of Spo24747.1 vs. TAIR (Arabidopsis)
Match: AT5G49050.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 111.7 bits (278), Expect = 4.300e-25 Identity = 54/119 (45.38%), Postives = 84/119 (70.59%), Query Frame = 1
BLAST of Spo24747.1 vs. TAIR (Arabidopsis)
Match: AT3G11930.3 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 110.5 bits (275), Expect = 9.500e-25 Identity = 71/189 (37.57%), Postives = 100/189 (52.91%), Query Frame = 1
BLAST of Spo24747.1 vs. TAIR (Arabidopsis)
Match: AT1G09740.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 107.5 bits (267), Expect = 8.100e-24 Identity = 58/157 (36.94%), Postives = 92/157 (58.60%), Query Frame = 1
BLAST of Spo24747.1 vs. TAIR (Arabidopsis)
Match: AT3G58450.1 (Adenine nucleotide alpha hydrolases-like superfamily protein) HSP 1 Score: 99.8 bits (247), Expect = 1.700e-21 Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo24747.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo24747.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo24747.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo24747.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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