Spo24716 (gene)

Overview
NameSpo24716
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 55170564 .. 55174045 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCCCGTAAAAAATAAAGTAAAATAAGAAATGACCCGTTGTTTAACTCAACGGTCTCTACCTTCCTTCTTTTGAGGAAGACCCTCGTCAAGCCTAATTCCTTCCCTGCTCGTCTCCTTCCTTCACTTATGCTCAGCCAACAAATTCCTTCCCTTCTCGTCGATCAACGCCGCTTCCAGTTCCTCTCAACTCCGTCGCCTCTGTCGCTACCATGGCTTACGCCTCCGCCTTCCAGATCTGCTACCTTCTCTCTCTAAAAAATTGCAACAAGATATTTTGTGGGGTTTATCTCTCTCCTCTCATTTCCCTCATCGATCGTCACCGCTACCCACACAACCAGAAGCTTATTCAAGTCTCCCTATTTGAAGAAATCGTTCATTTTACGTGATTCAATCTTCGAATGCATTCAATTTTCGTGATTCAATTCCTATTTGCCTGGTAATTCCTCTTTCTCTATGTGATTCAATCTTCGTTTAGTTTCATTTTGATTTAAAAATTCCTGTTAATATGGTCAAATCAGATGAAACAATTCCTTTTTAGCATTTAGTTTTATTCTTTTCGTTTTTGCTCTTATTTTAGTAGTTCTTCTTTTTGCTTCTTTGTTTTTGGGTTGTAATAAGACATGTACTAGTTCTGCATTTGCTATTAGGTTAGCTGAATTTATAAGAAAGGTAAGAATTTCTTTGTTTAGTATGTGGTGATAGTGTTTTGCGTTTTTTATTTTTGTTGAGGTTCAGTGATTGTCCTATGTGCTTGAACTGCTTGTAATATGTGATTTCTTTCTGTAAATCGTTTTCCTTCTTAATGCATATGCTTATGACTTGCAAGTTATATTTGCTGTTTTTCGAGCTTGTTATGAGCTTCTAATTAGAAAGAAAAAGGTAAACCTTAAGAGAAACTGGGCTGAGAAACCCTCGTATAGGTCGGGCTTGTCTATTGAGCTTGAGCTTGGTGTTTAGGCTTCAATCAGGCTGGTTATGTCATTCGTCGTAGAGAGAGTTGGTGGTTAGAGAGAGCTGGTGGTTGAGGACTTGAGGGATAAGAGAAGTTACTGGATTTCTAGATTCTTTTGGCCAAGTAATGTCAAGCCCCTAATGATTTTCTAGTTGCCGAAACATGTATTACTCAATGAAAGTTTGAACAATTCTACTCTCTAAATTCTTGAAATTCTAAATGTAAATTATAGTAATACGACTATGAATACTACAGGAGCAACTTATTTTAGTAGAGCAGTTAGGTCACCAACTTTTCTAGGTAAATTACACCCTTCAACCCTTTACTAATCATTGAATTATGAGAAATGGAAAGGATCCAATATTGACTTTATTGCAACTCTGTTGCAAACGTCTGCCAGTTCTATGTAAATGCTGTGAAATATTGTAACTCTGGAAACTGATTATATGTTTATGAATCCTTTTAGTTGTTTACTTGTTCATTAGGTGAAATCATCCGTAATACATGGAAAAGTCATTGCCTTCTTATATCTAACGATATTTTATCTTCTTTTAATATCTACTTATAAGATCTGTATAGTCGTCTTTAGTTGAACTGAGCAGTTATTTATTTCAATGCTCTATGTGTTTTGTTCCAGGCCAGTGTAGATTTAAAGCACCGTTACTCATCCTAGTATAAGAGACAATGATCAAAAAAACGGACGGATTATTTATAATGGTTAGTTTTTTTTAAATGTGTTTTTAGTTGACTGTTTTTTTTATGTCATCAAGTGGTGTTACGTATATTGGTGGTTAACACAACCCCTTGAATAGTTTGCTCTGCCCTTGATGATATATCTGCTTTGGAGAGCATGGAATTGTTAAATTTTTAGCACCCTAAGGGTGCCCTTAATTGTATTGGAGTGCACAACTTGTACTATAAAACCAAAAGGCTATTATTTGATCAAATTTATTAAATTTTCAATTCTATTTGCTAATTTCAATTCCTCCCTTTTCTCCCCCCATGAGTTGTTCGTGATTGTTTGATGTCTGTGAATCAGTCATACTTCTATGCTGAAAGTAAGTTTTGTAGTGTGGATGAGTTTCAAAACTCTTTACCTAATTATATAAGATTGAAATCGTAGTGAAGTTTGTTTTGCTTTCCAGCTGCCTATCATAAAGGCAACGTAGCTGCTGGGTTTGTCTTGTTGCAGTTGTGTGTTGCTGCTGGGTTTCATTTTTGTTGTGGTGCTGAGTGCTCCTTTCAGTTATGAAGTTGGTGGTACAATTGAGAAGTTGCTGCCTACTTCTATATTTTTTTGTTCAAGCTTGGCCAGAGTTGACTGTTTGTGTATGCAATTGTCTTTGAGCGCTTGTTGCTCCATAGCTGCTTTGGTTGGTTGTATTATTTGATGTTTTGTTTTCCTTTTGATTTGGGGTGGAAATTACTTGTGTACATACATTTTTGTTACGTTAATAAATTTCTTACTTACAAAAAAAAAAGTGAGGTAAACCATAGAGTTCATGTGTACAGAGTATTAGAATTTAGATTGTAATATTGAATAGGACTTTAGCAAAGTAAATGGGGAAAGTATGATTTTTTTTTTGGTCTGTTCAATTTGTTTGTTACTTTTTCTGCTTTTGTTCTTTGTTTGGATGACATACTTTATGCCTTGCACCTTGCTTTTTTGACTTGAATGTCGCTTTGGTGGACATATTTTGACCTTTTAGTGAATGACCAACACCTGAATAATGTTATTTTGGCACTTACATAAGTATTTCTACAACTTTGGCAATAAAGGTCCTCTCACGTGTGTAGCTTTATTGATTAAAGGTGTGCGACATAGCGCCTGGCTGTCATGCCATTAAGGAAGAATTCGTTTACAATAGTTTTTTGCTACGTACGTTGTTGTAGATGATAATGTTCTTAAATTATTCTAGCATGTTTCTTTTGTCTATTACTTTCTTATCCTTATAGTTCTTTTCTCCGTTGTTTTTTCCAGGTTTAAATGGTCTACGACAGGAGACAGACAAACCAACAGGTTGTGGTTCATTAGAATTTCGCATACAAGGGACATGAAAGGTTTGTTGCTAGTTGGTTTATATGTGGAATGGATTTGTTACAGTTTCCTTTAACTTTGCTTATGTGACCTATATGACTTATGTGACAAATTTTATGGAACATGTAGCTTCATATAAACAAGTTAAAGGAAGGAAGTTTGGGAAGGAGCCAAGGAGGGTTTTGGTGTATGGTGGAGCGTGGAAGAACTTTTTGGCGGCCTCGGAGAATAGGCAGTGGACTAGGAATAAATAGAGTTGGAGGCGAACATATGTTTGTGCCCGCATTGCTAAGACTTATTAATGTCAATTTGTTTAATCTTGTCACAATTGTACTCAATTTTAAGCCTTATTTATTTTGTCATTTTTATATTTTTGGAGATTACAGTTGATGTAAAGTGTGAAATAATTTTTTTTTGTAATTGTAAGAATTATTTGGAATTACCAAATTGGTTTATGCTATTGTTTTTTTAAGAAAAATAATGATAAGA

mRNA sequence

CTTTCCCGTAAAAAATAAAGTAAAATAAGAAATGACCCGTTGTTTAACTCAACGGTCTCTACCTTCCTTCTTTTGAGGAAGACCCTCGTCAAGCCTAATTCCTTCCCTGCTCGTCTCCTTCCTTCACTTATGCTCAGCCAACAAATTCCTTCCCTTCTCGTCGATCAACGCCGCTTCCAGTTCCTCTCAACTCCGTCGCCTCTGTCGCTACCATGGCTTACGCCTCCGCCTTCCAGATCTGCTACCTTCTCTCTCTAAAAAATTGCAACAAGATATTTTGTGGGGTTTATCTCTCTCCTCTCATTTCCCTCATCGATCGTCACCGCTACCCACACAACCAGAAGCTTATTCAAGTCTCCCTATTTGAAGAAATCGTTCATTTTACGTGATTCAATCTTCGAATGCATTCAATTTTCGTGATTCAATTCCTATTTGCCTGGCCAGTGTTTAAATGGTCTACGACAGGAGACAGACAAACCAACAGGTTGTGGTTCATTAGAATTTCGCATACAAGGGACATGAAAGCTTCATATAAACAAGTTAAAGGAAGGAAGTTTGGGAAGGAGCCAAGGAGGGTTTTGGTGTATGGTGGAGCGTGGAAGAACTTTTTGGCGGCCTCGGAGAATAGGCAGTGGACTAGGAATAAATAGAGTTGGAGGCGAACATATGTTTGTGCCCGCATTGCTAAGACTTATTAATGTCAATTTGTTTAATCTTGTCACAATTGTACTCAATTTTAAGCCTTATTTATTTTGTCATTTTTATATTTTTGGAGATTACAGTTGATGTAAAGTGTGAAATAATTTTTTTTTGTAATTGTAAGAATTATTTGGAATTACCAAATTGGTTTATGCTATTGTTTTTTTAAGAAAAATAATGATAAGA

Coding sequence (CDS)

ATGCATTCAATTTTCGTGATTCAATTCCTATTTGCCTGGCCAGTGTTTAAATGGTCTACGACAGGAGACAGACAAACCAACAGGTTGTGGTTCATTAGAATTTCGCATACAAGGGACATGAAAGCTTCATATAAACAAGTTAAAGGAAGGAAGTTTGGGAAGGAGCCAAGGAGGGTTTTGGTGTATGGTGGAGCGTGGAAGAACTTTTTGGCGGCCTCGGAGAATAGGCAGTGGACTAGGAATAAATAG

Protein sequence

MHSIFVIQFLFAWPVFKWSTTGDRQTNRLWFIRISHTRDMKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24716.1Spo24716.1mRNA


Homology
[Close]
BLAST of Spo24716.1 vs. NCBI nr
Match: gi|902191580|gb|KNA11879.1| (hypothetical protein SOVF_131040 [Spinacia oleracea])

HSP 1 Score: 93.6 bits (231), Expect = 1.700e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

		  

Query: 40 MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK 83
          MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK
Sbjct: 1  MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK 43
[Close]
BLAST of Spo24716.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QX69_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_131040 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 

		  

Query: 40 MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK 83
          MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK
Sbjct: 1  MKASYKQVKGRKFGKEPRRVLVYGGAWKNFLAASENRQWTRNK 43
The following BLAST results are available for this feature:
BLAST of Spo24716.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902191580|gb|KNA11879.1|1.7e-16100.hypothetical protein SOVF_1310... [more]
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BLAST of Spo24716.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QX69_SPIOL1.2e-16100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo24716.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24716.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0048444 floral organ morphogenesis
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0042430 indole-containing compound metabolic process
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:1901575 organic substance catabolic process
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0042538 hyperosmotic salinity response
biological_process GO:0019752 carboxylic acid metabolic process
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0009939 positive regulation of gibberellic acid mediated signaling pathway
biological_process GO:0010325 raffinose family oligosaccharide biosynthetic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009723 response to ethylene
biological_process GO:0009863 salicylic acid mediated signaling pathway
biological_process GO:0010162 seed dormancy process
biological_process GO:0009845 seed germination
biological_process GO:0009056 catabolic process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0007017 microtubule-based process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0042432 indole biosynthetic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0016114 terpenoid biosynthetic process
biological_process GO:0006412 translation
cellular_component GO:0005634 nucleus
cellular_component GO:0005875 microtubule associated complex
cellular_component GO:0019005 SCF ubiquitin ligase complex
cellular_component GO:0009579 thylakoid
cellular_component GO:0044434 chloroplast part
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005840 ribosome
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0016844 strictosidine synthase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0030234 enzyme regulator activity
RNA-Seq Expression