Spo24708 (gene)

Overview
NameSpo24708
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem II CP43 reaction center protein (PSII 43 kDa protein) (Protein CP-43) (Precursor)
Locationchr4 : 55151953 .. 55152818 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACCTGGGCTCCCGGAGGTGGAGATGTAAGAAAAATTACCAACGTCACCCTTAGTCCAAGTATTATATTTGGTTATTTACTAAAATCGCCTTTTGGAGGAGAAGGGTGGATTGTTAGTGTAGACGATTTGGAAGATATAATAGGGGGGCATGTATGGATAGGTTTCATTTGTATACTTGGTGGAATCTGGCATATTTTAACAAAACCTTTTGCATGGGCTCGCCGCGCACTTGTCTGGTCTGGCGAGGCTTATTTGTCTTATAGTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTAAGTATCTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGGGGCGAAACTATGAGGTTTTGGGATTTGCGCGCTCCGTGGTTAGAACCCCTAAGAGGTCCAAACGGTTTGGACTTGAGTCGCCTGAAAAAAGATATACAACCTTGGCAAGAACGACGTTCAGCAGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCTGTGGGTGGGGTGGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

mRNA sequence

ATGATACCTGGGCTCCCGGAGGTGGAGATTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTAAGTATCTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGGGGCGAAACTATGAGGTTTTGGGATTTGCGCGCTCCGTGGTTAGAACCCCTAAGAGGTCCAAACGGTTTGGACTTGAGTCGCCTGAAAAAAGATATACAACCTTGGCAAGAACGACGTTCAGCAGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCTGTGGGTGGGGTGGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

Coding sequence (CDS)

ATGATACCTGGGCTCCCGGAGGTGGAGATTTTGGCTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGTTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTACGGGCCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTAAGTATCTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGGGGCGAAACTATGAGGTTTTGGGATTTGCGCGCTCCGTGGTTAGAACCCCTAAGAGGTCCAAACGGTTTGGACTTGAGTCGCCTGAAAAAAGATATACAACCTTGGCAAGAACGACGTTCAGCAGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCTGTGGGTGGGGTGGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTATCTACTTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGGCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCGATGACCCCTCTTAATTGA

Protein sequence

MIPGLPEVEILAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24708.1Spo24708.1mRNA


Homology
[Close]
BLAST of Spo24708.1 vs. NCBI nr
Match: gi|748991308|gb|AJE71746.1| (photosystem II 44 kDa protein (plastid) [Astragalus canadensis])

HSP 1 Score: 417.2 bits (1071), Expect = 1.700e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. NCBI nr
Match: gi|501770850|ref|YP_007889857.1| (photosystem II CP43 chlorophyll apoprotein [Francoa sonchifolia])

HSP 1 Score: 417.2 bits (1071), Expect = 1.700e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. NCBI nr
Match: gi|323149078|ref|YP_004222642.1| (photosystem II CP43 chlorophyll apoprotein (chloroplast) [Anthriscus cerefolium])

HSP 1 Score: 417.2 bits (1071), Expect = 1.700e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. NCBI nr
Match: gi|748991812|gb|AJE72243.1| (photosystem II 44 kDa protein (plastid) [Oxytropis lambertii])

HSP 1 Score: 417.2 bits (1071), Expect = 1.700e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. NCBI nr
Match: gi|568244730|ref|YP_008963476.1| (photosystem II CP43 chlorophyll apoprotein (chloroplast) [Penthorum chinense])

HSP 1 Score: 417.2 bits (1071), Expect = 1.700e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Match: A0A0K0LUI5_9FABA (Photosystem II CP43 reaction center protein OS=Astragalus canadensis GN=psbC PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.200e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Match: A0A0K0LVU3_9FABA (Photosystem II CP43 reaction center protein OS=Oxytropis lambertii GN=psbC PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.200e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Match: E9K7P4_9APIA (Photosystem II CP43 reaction center protein OS=Anthriscus cerefolium GN=psbC PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.200e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Match: V9ZA57_9MAGN (Photosystem II CP43 reaction center protein OS=Saxifraga stolonifera GN=psbC PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.200e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Match: A0A067YQE9_ROSGI (Photosystem II CP43 reaction center protein OS=Rosa gigantea GN=psbC PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.200e-113
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Match: PSBC_SPIOL (Photosystem II CP43 reaction center protein OS=Spinacia oleracea GN=psbC PE=1 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 1.100e-115
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Match: PSBC_LOTJA (Photosystem II CP43 reaction center protein OS=Lotus japonicus GN=psbC PE=3 SV=2)

HSP 1 Score: 416.0 bits (1068), Expect = 2.400e-115
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 264 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 323

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 324 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 383

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 384 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGF 443

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 444 EKGIDRDFEPVLSMTPLN 461
[Close]
BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Match: PSBC_EUCGG (Photosystem II CP43 reaction center protein OS=Eucalyptus globulus subsp. globulus GN=psbC PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 2.400e-115
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Match: PSBC_DAUCA (Photosystem II CP43 reaction center protein OS=Daucus carota GN=psbC PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 2.400e-115
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Match: PSBC_DRIGR (Photosystem II CP43 reaction center protein OS=Drimys granadensis GN=psbC PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 2.400e-115
Identity = 197/198 (99.49%), Postives = 198/198 (100.00%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
[Close]
BLAST of Spo24708.1 vs. TAIR (Arabidopsis)
Match: ATCG00280.1 (photosystem II reaction center protein C)

HSP 1 Score: 414.1 bits (1063), Expect = 5.200e-116
Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = 1 

		  

Query: 11  LAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 70
           LAALSV GFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT
Sbjct: 276 LAALSVCGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPT 335

Query: 71  GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 130
           GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY
Sbjct: 336 GLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEY 395

Query: 131 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 190
           MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF
Sbjct: 396 MTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGF 455

Query: 191 EKGIDRDFEPVLSMTPLN 209
           EKGIDRDFEPVLSMTPLN
Sbjct: 456 EKGIDRDFEPVLSMTPLN 473
The following BLAST results are available for this feature:
BLAST of Spo24708.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|748991308|gb|AJE71746.1|1.7e-113100.photosystem II 44 kDa protein ... [more]
gi|501770850|ref|YP_007889857.1|1.7e-113100.photosystem II CP43 chlorophyl... [more]
gi|323149078|ref|YP_004222642.1|1.7e-113100.photosystem II CP43 chlorophyl... [more]
gi|748991812|gb|AJE72243.1|1.7e-113100.photosystem II 44 kDa protein ... [more]
gi|568244730|ref|YP_008963476.1|1.7e-113100.photosystem II CP43 chlorophyl... [more]
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BLAST of Spo24708.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K0LUI5_9FABA1.2e-113100.Photosystem II CP43 reaction c... [more]
A0A0K0LVU3_9FABA1.2e-113100.Photosystem II CP43 reaction c... [more]
E9K7P4_9APIA1.2e-113100.Photosystem II CP43 reaction c... [more]
V9ZA57_9MAGN1.2e-113100.Photosystem II CP43 reaction c... [more]
A0A067YQE9_ROSGI1.2e-113100.Photosystem II CP43 reaction c... [more]
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BLAST of Spo24708.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBC_SPIOL1.1e-115100.Photosystem II CP43 reaction c... [more]
PSBC_LOTJA2.4e-11599.4Photosystem II CP43 reaction c... [more]
PSBC_EUCGG2.4e-11599.4Photosystem II CP43 reaction c... [more]
PSBC_DAUCA2.4e-11599.4Photosystem II CP43 reaction c... [more]
PSBC_DRIGR2.4e-11599.4Photosystem II CP43 reaction c... [more]
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BLAST of Spo24708.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00280.15.2e-11699.4photosystem II reaction center... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 11..204
score: 8.8
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 11..207
score: 7.19
NoneNo IPR availableGENE3D1.10.10.670coord: 39..134
score: 1.2
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 11..208
score: 7.6E
NoneNo IPR availablePANTHERPTHR33180:SF4PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEINcoord: 11..208
score: 7.6E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0006814 sodium ion transport
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006554 lysine catabolic process
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0009635 response to herbicide
biological_process GO:0008152 metabolic process
biological_process GO:0015074 DNA integration
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015979 photosynthesis
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0009521 photosystem
cellular_component GO:0016020 membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005763 mitochondrial small ribosomal subunit
cellular_component GO:0009523 photosystem II
cellular_component GO:0005730 nucleolus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0009522 photosystem I
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0010287 plastoglobule
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008289 lipid binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0003824 catalytic activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0010242 oxygen evolving activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008777 acetylornithine deacetylase activity
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004497 monooxygenase activity
RNA-Seq Expression