Spo24696 (gene) | SpinachBase

Overview


Name	Spo24696
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Zinc finger CCCH domain-containing protein 39
Location	chr4 : 55619841 .. 55621226 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACATTAGATATTTTTTTTCATTTTCTCGGTCCTCCTCTTTACCTTCTCTGCTTCTTCTTCTGCTTCAACCATCGTCATCGTCGCTGCTACTTCTGCCATTGCCATCGCCGGCGTTGCTTCTGCCATCGCCGCTTCTGAGATGAAGAATGTAGTCTCAAGGTTATTCCATATTGTTGGCCCCCATCAACCCACACAACCAGAAGCTTCGAGTTGCCCTAATTTGAAGAAATCGTTCAACGATGCTGCTTAATTCAAGTTTCCCAGGTAATTCAATTTTTGTTTTAGTTTAATTTCGATTTACAATTCAAGTTCATATAAGTTTAGAAGACCAGAACAATCTAAATTAAGTAAATTGGAGAGGATAATGGCGTAAATTAAGATAATGAGCCGTTAGGGTTTAAGGGATTTAGGGTTTTTCCTTTTATCTTTACACCTTTTTCTCTGCAATTTTCTCTTTGTCAAATTCTAGAGGAAGGCTGCTAGGGTTATCAATTTGGGGTTCCCATATTTCGTCCAATATATATTATACCCACTACTATCCATGTTCTGTTTTTACTAATCTGGAGATTTATATATATTAATCATCTCTCAATTAATTCAATTATTCAATTCTTTGATTCCCTCTTATCAAATCTTCGTTGTAATTTCCGAATTCTTTGATTTTGTCCCCTTTAATTTAGGAATTTGGTTGGTTTTAATTAGTGGGTATATAAGAAAGTTTGAATCTTTAGTTAATTTTTATCTGGGTTTGTTGAGATTGATTGATTTTGCATCTCAAATTTCAACAGGATGAGTTTCTCTGATTCTTTTTCATCGTTTGCACCTTTCTCTAATGGGTTAGATTCAATGGGAGAATTCTAGGGAGAGCTCTGCAATCAGCATTGGTACTACAGGGCCTTCTATGGTGCAGCAACCTAGGGCTCCTGATCAATATGATGTTCATAGGATGGCGGCGAATGGTAATGGTGTTATGGATGTTATGAGAGGGAATTCGAGGCCGGTTTTTTGGAAAACAAAGCTCTGTACCAAGTTTGAAACAGCAGGGCTCTGTCCTTTTGGGGACAATTGCCATTTTGCTCATGGGCATGCAGGTATGTATCATGACAAACTTGTAGTAATTGTCTCAATAAAACCCTATTACTATACTAATTTATGATGTTCTTGTTACAATTTGTTGTTTTCAATATGTTGTTGAGAATTGGTATCTGTCATTTGCTCTTGATGAATTGTTGATGATATGTTAAATGTGTTTGAATCATAGATGTCTCGTATGGTAAGAAGGTGGAGTGTTGGGTTATCAGGATCTCTGTGGGGTTTATCTTGTGCAAATTAGGTCAATTGTTTCCTTTGGTATTCCTCTATGGAGCTAAGACGGACTTATGA

mRNA sequence

GGAACATTAGATATTTTTTTTCATTTTCTCGGTCCTCCTCTTTACCTTCTCTGCTTCTTCTTCTGCTTCAACCATCGTCATCGTCGCTGCTACTTCTGCCATTGCCATCGCCGGCGTTGCTTCTGCCATCGCCGCTTCTGAGATGAAGAATGTAGTCTCAAGGTTATTCCATATTGTTGGCCCCCATCAACCCACACAACCAGAAGCTTCGAGTTGCCCTAATTTGAAGAAATCGTTCAACGATGCTGCTTAATTCAAGTTTCCCAGGGCCTTCTATGGTGCAGCAACCTAGGGCTCCTGATCAATATGATGTTCATAGGATGGCGGCGAATGGTAATGGTGTTATGGATGTTATGAGAGGGAATTCGAGGCCGGTTTTTTGGAAAACAAAGCTCTGTACCAAGTTTGAAACAGCAGGGCTCTGTCCTTTTGGGGACAATTGCCATTTTGCTCATGGGCATGCAGATGTCTCGTATGGTAAGAAGGTGGAGTGTTGGGTTATCAGGATCTCTGTGGGGTTTATCTTGTGCAAATTAGGTCAATTGTTTCCTTTGGTATTCCTCTATGGAGCTAAGACGGACTTATGA

Coding sequence (CDS)

ATGCTGCTTAATTCAAGTTTCCCAGGGCCTTCTATGGTGCAGCAACCTAGGGCTCCTGATCAATATGATGTTCATAGGATGGCGGCGAATGGTAATGGTGTTATGGATGTTATGAGAGGGAATTCGAGGCCGGTTTTTTGGAAAACAAAGCTCTGTACCAAGTTTGAAACAGCAGGGCTCTGTCCTTTTGGGGACAATTGCCATTTTGCTCATGGGCATGCAGATGTCTCGTATGGTAAGAAGGTGGAGTGTTGGGTTATCAGGATCTCTGTGGGGTTTATCTTGTGCAAATTAGGTCAATTGTTTCCTTTGGTATTCCTCTATGGAGCTAAGACGGACTTATGA

Protein sequence

MLLNSSFPGPSMVQQPRAPDQYDVHRMAANGNGVMDVMRGNSRPVFWKTKLCTKFETAGLCPFGDNCHFAHGHADVSYGKKVECWVIRISVGFILCKLGQLFPLVFLYGAKTDL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24696.1	Spo24696.1	mRNA

Homology

[Close]

BLAST of Spo24696.1 vs. NCBI nr
Match: gi|902197667|gb|KNA13492.1| (hypothetical protein SOVF_116470, partial [Spinacia oleracea])

HSP 1 Score: 144.8 bits (364), Expect = 9.100e-32
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1


		  
Query: 9   GPSMVQQPRAPDQYDVHRMAANGNGVMDVMRGNSRPVFWKTKLCTKFETAGLCPFGDNCH 68
           GP MVQQPRAPDQYDVHRMAANGNG MDVMRGNS+PV+WKTKLCTKFET GLCPFGDNCH
Sbjct: 199 GPPMVQQPRAPDQYDVHRMAANGNGGMDVMRGNSKPVYWKTKLCTKFETTGLCPFGDNCH 258

Query: 69  FAHGHADV 77
           FAHGHA++
Sbjct: 259 FAHGHAEL 266

[Close]

BLAST of Spo24696.1 vs. NCBI nr
Match: gi|731331452|ref|XP_010676669.1| (PREDICTED: zinc finger CCCH domain-containing protein 39 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 104.0 bits (258), Expect = 1.800e-19
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 1


		  
Query: 9   GPSMVQQPRAPDQYDVHRMAANGNGV--MDVMRGNSRPVFWKTKLCTKFETAGLCPFGDN 68
           GP MVQ  R  DQ++V+RM  N NG+  +D  RGNSRPV+WKTKLCTKFE  G CPFGDN
Sbjct: 193 GPPMVQA-RVNDQFEVNRMPGNANGIAAVDASRGNSRPVYWKTKLCTKFEITGHCPFGDN 252

Query: 69  CHFAHGHADV 77
           CHFAHG A++
Sbjct: 253 CHFAHGQAEL 261

[Close]

BLAST of Spo24696.1 vs. NCBI nr
Match: gi|719994995|ref|XP_010254349.1| (PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1 [Nelumbo nucifera])

HSP 1 Score: 78.2 bits (191), Expect = 1.000e-11
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1


		  
Query: 23  DVHRMAANGNGVMDVMRGNSRPVFWKTKLCTKFETAGLCPFGDNCHFAHGHADV-SYGKK 82
           D   +  +GN   DV R N +PVFWKT++C K+ET G CPFG+ CHFAHG A++  YG  
Sbjct: 205 DQQEVNGSGNSSFDVNRMNPKPVFWKTRICNKWETTGHCPFGEKCHFAHGQAELQKYGGH 264

Query: 83  VE 84
            E
Sbjct: 265 TE 266

[Close]

BLAST of Spo24696.1 vs. NCBI nr
Match: gi|595805573|ref|XP_007202316.1| (hypothetical protein PRUPE_ppa008076mg [Prunus persica])

HSP 1 Score: 77.8 bits (190), Expect = 1.400e-11
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 1


		  
Query: 9   GPSMVQQPRAPDQYDVHRMAANGNGVMDVMRGNSRPVFWKTKLCTKFETAGLCPFGDNCH 68
           GPS+V    + +  + +R+ + G   MD  R N +PV+WKTKLC K+ET G CPFG+ CH
Sbjct: 198 GPSVVHGSGS-NHSEENRLVSTG---MDTFRVNMKPVYWKTKLCNKWETTGKCPFGEKCH 257

Query: 69  FAHGHADVSY-GKKVECWVI 88
           FAHG A++   G +VE  V+
Sbjct: 258 FAHGQAELQVPGGRVEAEVL 273

[Close]

BLAST of Spo24696.1 vs. NCBI nr
Match: gi|719981103|ref|XP_010250023.1| (PREDICTED: zinc finger CCCH domain-containing protein 39-like [Nelumbo nucifera])

HSP 1 Score: 77.8 bits (190), Expect = 1.400e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1


		  
Query: 20  DQYDVHRMAANGNGVMDVMRGNSRPVFWKTKLCTKFETAGLCPFGDNCHFAHGHADV 77
           DQ + H   ++ N  +DV R N++PVFWKT++C K+ET G CPFGD CHFAHG A++
Sbjct: 207 DQQEGH---SSSNSSLDVNRVNAKPVFWKTRICNKWETTGQCPFGDKCHFAHGQAEL 260

[Close]

BLAST of Spo24696.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3T9_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_116470 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.400e-32
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 1


		  
Query: 9   GPSMVQQPRAPDQYDVHRMAANGNGVMDVMRGNSRPVFWKTKLCTKFETAGLCPFGDNCH 68
           GP MVQQPRAPDQYDVHRMAANGNG MDVMRGNS+PV+WKTKLCTKFET GLCPFGDNCH
Sbjct: 199 GPPMVQQPRAPDQYDVHRMAANGNGGMDVMRGNSKPVYWKTKLCTKFETTGLCPFGDNCH 258

Query: 69  FAHGHADV 77
           FAHGHA++
Sbjct: 259 FAHGHAEL 266

[Close]

BLAST of Spo24696.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F8K7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g102030 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.200e-19
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 1


		  
Query: 9   GPSMVQQPRAPDQYDVHRMAANGNGV--MDVMRGNSRPVFWKTKLCTKFETAGLCPFGDN 68
           GP MVQ  R  DQ++V+RM  N NG+  +D  RGNSRPV+WKTKLCTKFE  G CPFGDN
Sbjct: 193 GPPMVQA-RVNDQFEVNRMPGNANGIAAVDASRGNSRPVYWKTKLCTKFEITGHCPFGDN 252

Query: 69  CHFAHGHADV 77
           CHFAHG A++
Sbjct: 253 CHFAHGQAEL 261

[Close]

BLAST of Spo24696.1 vs. UniProtKB/TrEMBL
Match: M5W9P8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008076mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.500e-12
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 1


		  
Query: 9   GPSMVQQPRAPDQYDVHRMAANGNGVMDVMRGNSRPVFWKTKLCTKFETAGLCPFGDNCH 68
           GPS+V    + +  + +R+ + G   MD  R N +PV+WKTKLC K+ET G CPFG+ CH
Sbjct: 198 GPSVVHGSGS-NHSEENRLVSTG---MDTFRVNMKPVYWKTKLCNKWETTGKCPFGEKCH 257

Query: 69  FAHGHADVSY-GKKVECWVI 88
           FAHG A++   G +VE  V+
Sbjct: 258 FAHGQAELQVPGGRVEAEVL 273

[Close]

BLAST of Spo24696.1 vs. UniProtKB/TrEMBL
Match: B9SEP0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0221060 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.100e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1


		  
Query: 32  NGVMDVMRGNSRPVFWKTKLCTKFETAGLCPFGDNCHFAHGHADV 77
           N   D  RGN +PV+WKTKLCTK+ET G CPFG+ CHFAHG A++
Sbjct: 215 NAGADAYRGNMKPVYWKTKLCTKWETTGQCPFGEKCHFAHGQAEL 259

[Close]

BLAST of Spo24696.1 vs. UniProtKB/TrEMBL
Match: A0A061GN87_THECC (Zinc finger family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_038030 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.700e-11
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1


		  
Query: 18  APDQYDVHRMAANGNGVMDVMRGNSRPVFWKTKLCTKFETAGLCPFGDNCHFAHGHADV 77
           A DQ + +R   + +   D  RGN +PV+WKTKLCTK+ET G CPFG+ CHFAHG +++
Sbjct: 203 ASDQSEGNRPLNSASS--DAFRGNMKPVYWKTKLCTKWETTGHCPFGEKCHFAHGQSEL 259

[Close]

BLAST of Spo24696.1 vs. ExPASy Swiss-Prot
Match: C3H39_ARATH (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.300e-9
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1


		  
Query: 40  GNSRPVFWKTKLCTKFETAGLCPFGDNCHFAHGHADV 77
           G  + V+WKT+LC KF+  G CPFGD CHFAHG A++
Sbjct: 263 GVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299

[Close]

BLAST of Spo24696.1 vs. ExPASy Swiss-Prot
Match: C3H56_ORYSJ (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.800e-8
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1


		  
Query: 28  AANGNGVMDVMRGNSRPVFWKTKLCTKFETAGLCPFGDNCHFAHGHADV-SYG 80
           AA GNG M       +P  WKT++C K+E  G CPFG  CHFAHG A++  YG
Sbjct: 233 AAAGNGPMQ------KPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYG 279

[Close]

BLAST of Spo24696.1 vs. ExPASy Swiss-Prot
Match: C3H12_ARATH (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.800e-7
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1


		  
Query: 43  RPVFWKTKLCTKFETAGLCPFGDNCHFAHGHADV 77
           +P  WKT++C K+E  G CPFG  CHFAHG A++
Sbjct: 257 KPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290

[Close]

BLAST of Spo24696.1 vs. ExPASy Swiss-Prot
Match: C3H28_ARATH (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana GN=At2g35430 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.300e-6
Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = 1


		  
Query: 47  WKTKLCTKFETAGLCPFGDNCHFAHGHADV 77
           WKT++C K++T G CPFG +CHFAHG +++
Sbjct: 144 WKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173

[Close]

BLAST of Spo24696.1 vs. TAIR (Arabidopsis)
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.700e-10
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1


		  
Query: 40  GNSRPVFWKTKLCTKFETAGLCPFGDNCHFAHGHADV 77
           G  + V+WKT+LC KF+  G CPFGD CHFAHG A++
Sbjct: 263 GVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAEL 299

[Close]

BLAST of Spo24696.1 vs. TAIR (Arabidopsis)
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.400e-8
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1


		  
Query: 43  RPVFWKTKLCTKFETAGLCPFGDNCHFAHGHADV 77
           +P  WKT++C K+E  G CPFG  CHFAHG A++
Sbjct: 257 KPSNWKTRICNKWEITGYCPFGAKCHFAHGAAEL 290

[Close]

BLAST of Spo24696.1 vs. TAIR (Arabidopsis)
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 53.9 bits (128), Expect = 7.500e-8
Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = 1


		  
Query: 47  WKTKLCTKFETAGLCPFGDNCHFAHGHADV 77
           WKT++C K++T G CPFG +CHFAHG +++
Sbjct: 144 WKTRICNKWQTTGYCPFGSHCHFAHGPSEL 173

The following BLAST results are available for this feature:

BLAST of Spo24696.1 vs. NCBI nr
BLAST of Spo24696.1 vs. UniProtKB/TrEMBL
BLAST of Spo24696.1 vs. ExPASy Swiss-Prot
BLAST of Spo24696.1 vs. TAIR (Arabidopsis)

BLAST of Spo24696.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902197667\|gb\|KNA13492.1\|	9.1e-32	89.7	hypothetical protein SOVF_1164...	[more]
gi\|731331452\|ref\|XP_010676669.1\|	1.8e-19	65.7	PREDICTED: zinc finger CCCH do...	[more]
gi\|719994995\|ref\|XP_010254349.1\|	1.0e-11	51.6	PREDICTED: zinc finger CCCH do...	[more]
gi\|595805573\|ref\|XP_007202316.1\|	1.4e-11	46.2	hypothetical protein PRUPE_ppa...	[more]
gi\|719981103\|ref\|XP_010250023.1\|	1.4e-11	54.3	PREDICTED: zinc finger CCCH do...	[more]

BLAST of Spo24696.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R3T9_SPIOL	6.4e-32	89.7	Uncharacterized protein (Fragm...	[more]
A0A0J8F8K7_BETVU	1.2e-19	65.7	Uncharacterized protein OS=Bet...	[more]
M5W9P8_PRUPE	9.5e-12	46.2	Uncharacterized protein OS=Pru...	[more]
B9SEP0_RICCO	2.1e-11	64.4	Putative uncharacterized prote...	[more]
A0A061GN87_THECC	4.7e-11	52.5	Zinc finger family protein, pu...	[more]

BLAST of Spo24696.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4


Match Name	E-value	Identity	Description
C3H39_ARATH	8.3e-9	59.4	Zinc finger CCCH domain-contai...	[more]
C3H56_ORYSJ	1.8e-8	50.9	Zinc finger CCCH domain-contai...	[more]
C3H12_ARATH	7.8e-7	55.8	Zinc finger CCCH domain-contai...	[more]
C3H28_ARATH	1.3e-6	56.6	Zinc finger CCCH domain-contai...	[more]

BLAST of Spo24696.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT3G19360.1	4.7e-10	59.4	Zinc finger (CCCH-type) family...	[more]
AT1G32360.1	4.4e-8	55.8	Zinc finger (CCCH-type) family...	[more]
AT2G35430.1	7.5e-8	56.6	Zinc finger C-x8-C-x5-C-x3-H t...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	4.10.1000.10		coord: 42..75 score: 2.7
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 47..72 score: 7.3
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 46..73 score: 4.
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 46..74 score: 1
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 44..76 score: 1.96
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 39..74 score: 7.8
None	No IPR available	PANTHER	PTHR12547:SF70	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39	coord: 39..74 score: 7.8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo20565	0.65	Barchart \| Table