Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCGTCGTCATGCATAGAAAACAATTGTATGGAAAAAAATAAAAAAGGGTAAATTAGCACTATAAATAAGAGCAATGATATGAGTAAAAATGATCAAAACAAACCCACATCTGTATTATCAAATCTTGTCTCAAAAGTGTTTAGCTAATATTATGGGTTTCTCCAAATTTGCTGTTTTTGCGCTTCTTATGCTCGCTGCATCAGGTATATATATGAAGTTTCAGGCTTGTCAATGCATATTTCTAACAATTAATTATATATCTTAAAATATATACCAAGACTTTGTATATTTTATCGACATAAATCTAATGAAATCTCAATGTGTGAAAGAGTAATGTAAAACTGCAAATGGTGTTATTATAAGAAAATGAAGGAAATATATATTTCTTGCATTATGCATTATTTATAATAACATCTCCAAACTTGCCACATACTAGTATGTTTCAAATTAGTTGTCCATTTTTATAATTAGGGCGGTTCTTAGTGCAGTGCGGGTTGAGCAACGTAATAGGGCCTCCAGACTCCAGTATATAAATATGTTTTAATTAATTAGTTTTCTTAATATAAGTAAAAATAAAGGTGGAATAATGGTTAAGATGTTAGGGTATATATAATGCCCACGATCATTACCGGGTTCAAATACTAACCAAGTTGTCCCCAACACTGATTATGACAATCGCCAAGACGTACATGCATGTGACGACGTGCACGTGGTACCATTAATAATTTACGTACAATATATATAATGTTGTTGTAATACTTCGTAAAAAATTCATTATGACAGGTACATATATACATCAATATATATATTATTACGTTGTGAATTTAGTTATATTATTTATAATTTTCAGGTGTGATAGATGCGAAATATCAACCAATCACCACCGGACCAATAATGAGTGAGGAACTGTTGAAGGCCGAAGTGAAGGCATTGGCATCACTTAGAGAAATTGAAAGGAGTGTTATTGCTTCAAAGCTGATGCAAAAACTGATCAGGACCGAAGATAAGTGTTCTCCTCCGGGGGCCGCATGTGGACGATCGGAAGACTGTTGCTCCGGCGCTTGTGTTCCCCATCCTTTTATGTTTATCATTGTTTGCCAGTAAGAGATCGAGGTTGCATGGATAATCGGATCATGATCCACCGATATGATCATCACCTTCAATTTCCTTCGTTAATTATGTACTCCGATCGATCCCTACTTTTTACTGTATCCGTGTACCATATAGAATAAAATTGACCAATCTCTTGAGTGGTAGTTCTTGGATTAGGATCAAGTTTGGTTTCTAATTTCTCGATCTTAATTAAGCCAATAATCTATGTCTATTTGTTTTAGCTAACCTTGTAAGTTCCGCACCAACAACTTGTGTCGGTTTAGGACAGAGCAAGAGAAGATATATAATCCCTTATACATTGTATGGTTCACACACAATGTGACGATAGAAGATAAGATCTCATATACTTCGTACTGCGAATGGTTCACATAGAACTACAGAAGATAAGATTAGTACTGTTTTTTTTTTTTTTTTTTTTTTTTTTNAAACAAACATTAAGGAAAGAAAGCAAAAGAAATAGAAGTTGCAGCTGCAGAGGTTGCAATGTCGTGAGCACCTTGAACTTGATCTCGACCTACCTTTTGGATGTTGCACCAGTCGAACATTCTTCCCAGACGCTTAATCTCAGTTATGGTCCAAAGCAGGTTAATGTCAATCGTGCTTTGTTGGAGAAGCATTTCAACCAACATATGAGAATCCGTAAGAACAATAATATGTCGAACTGTAGCTGTAATGCTCCATCTAAGTGCAAACAAACATGCAAGGACCTCCGCTTGAAGAGCTGACTTCGCTGTCCCTACAGAAGCTCCACCTAAGATCCCATCCGATGTTATCAGAGGATTACTAAGCACCCAACTCATTCCAGCTATCCGAGTATTCTTCTTCCAAGATCCATCAACCTGAATGAAAGACATTATTCCTTGTATCTCTGAGTCAGCAAGTATCACTCTAAAAAAACCCGGCGGATAAAGCGGA TTCGTCGTCATGCATAGAAAACAATTGTATGGAAAAAAATAAAAAAGGGTAAATTAGCACTATAAATAAGAGCAATGATATGAGTAAAAATGATCAAAACAAACCCACATCTGTATTATCAAATCTTGTCTCAAAAGTGTTTAGCTAATATTATGGGTTTCTCCAAATTTGCTGTTTTTGCGCTTCTTATGCTCGCTGCATCAGGTGTGATAGATGCGAAATATCAACCAATCACCACCGGACCAATAATGAGTGAGGAACTGTTGAAGGCCGAAGTGAAGGCATTGGCATCACTTAGAGAAATTGAAAGGAGTGTTATTGCTTCAAAGCTGATGCAAAAACTGATCAGGACCGAAGATAAGTGTTCTCCTCCGGGGGCCGCATGTGGACGATCGGAAGACTGTTGCTCCGGCGCTTGTGTTCCCCATCCTTTTATGTTTATCATTGTTTGCCAGTAAGAGATCGAGGTTGCATGGATAATCGGATCATGATCCACCGATATGATCATCACCTTCAATTTCCTTCGTTAATTATGTACTCCGATCGATCCCTACTTTTTACTGTATCCGTGTACCATATAGAATAAAATTGACCAATCTCTTGAGTGGTAGTTCTTGGATTAGGATCAAGTTTGGTTTCTAATTTCTCGATCTTAATTAAGCCAATAATCTATGTCTATTTGTTTTAGCTAACCTTGTAAGTTCCGCACCAACAACTTGTGTCGGTTTAGGACAGAGCAAGAGAAGATATATAATCCCTTATACATTGTATGGTTCACACACAATGTGACGATAGAAGATAAGATCTCATATACTTCGTACTGCGAATGGTTCACATAGAACTACAGAAGATAAGATTAGTACTGTTTTTTTTTTTTTTTTTTTTTTTTTTNAAACAAACATTAAGGAAAGAAAGCAAAAGAAATAGAAGTTGCAGCTGCAGAGGTTGCAATGTCGTGAGCACCTTGAACTTGATCTCGACCTACCTTTTGGATGTTGCACCAGTCGAACATTCTTCCCAGACGCTTAATCTCAGTTATGGTCCAAAGCAGGTTAATGTCAATCGTGCTTTGTTGGAGAAGCATTTCAACCAACATATGAGAATCCGTAAGAACAATAATATGTCGAACTGTAGCTGTAATGCTCCATCTAAGTGCAAACAAACATGCAAGGACCTCCGCTTGAAGAGCTGACTTCGCTGTCCCTACAGAAGCTCCACCTAAGATCCCATCCGATGTTATCAGAGGATTACTAAGCACCCAACTCATTCCAGCTATCCGAGTATTCTTCTTCCAAGATCCATCAACCTGAATGAAAGACATTATTCCTTGTATCTCTGAGTCAGCAAGTATCACTCTAAAAAAACCCGGCGGATAAAGCGGA ATGATCAAAACAAACCCACATCTGTATTATCAAATCTTGTCTCAAAAGTGTTTAGCTAATATTATGGGTTTCTCCAAATTTGCTGTTTTTGCGCTTCTTATGCTCGCTGCATCAGGTGTGATAGATGCGAAATATCAACCAATCACCACCGGACCAATAATGAGTGAGGAACTGTTGAAGGCCGAAGTGAAGGCATTGGCATCACTTAGAGAAATTGAAAGGAGTGTTATTGCTTCAAAGCTGATGCAAAAACTGATCAGGACCGAAGATAAGTGTTCTCCTCCGGGGGCCGCATGTGGACGATCGGAAGACTGTTGCTCCGGCGCTTGTGTTCCCCATCCTTTTATGTTTATCATTGTTTGCCAGTAA MIKTNPHLYYQILSQKCLANIMGFSKFAVFALLMLAASGVIDAKYQPITTGPIMSEELLKAEVKALASLREIERSVIASKLMQKLIRTEDKCSPPGAACGRSEDCCSGACVPHPFMFIIVCQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo24683.1 vs. NCBI nr
Match: gi|902198411|gb|KNA13659.1| (hypothetical protein SOVF_114670 [Spinacia oleracea]) HSP 1 Score: 198.4 bits (503), Expect = 7.400e-48 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1
BLAST of Spo24683.1 vs. NCBI nr
Match: gi|902198410|gb|KNA13658.1| (hypothetical protein SOVF_114660 [Spinacia oleracea]) HSP 1 Score: 131.7 bits (330), Expect = 8.500e-28 Identity = 73/106 (68.87%), Postives = 80/106 (75.47%), Query Frame = 1
BLAST of Spo24683.1 vs. NCBI nr
Match: gi|902198409|gb|KNA13657.1| (hypothetical protein SOVF_114650 [Spinacia oleracea]) HSP 1 Score: 131.0 bits (328), Expect = 1.500e-27 Identity = 72/106 (67.92%), Postives = 81/106 (76.42%), Query Frame = 1
BLAST of Spo24683.1 vs. NCBI nr
Match: gi|902192504|gb|KNA12060.1| (hypothetical protein SOVF_129340 [Spinacia oleracea]) HSP 1 Score: 114.8 bits (286), Expect = 1.100e-22 Identity = 62/92 (67.39%), Postives = 71/92 (77.17%), Query Frame = 1
BLAST of Spo24683.1 vs. NCBI nr
Match: gi|731335337|ref|XP_010678676.1| (PREDICTED: uncharacterized protein LOC104894196 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 82.8 bits (203), Expect = 4.600e-13 Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = 1
BLAST of Spo24683.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R400_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114670 PE=4 SV=1) HSP 1 Score: 198.4 bits (503), Expect = 5.200e-48 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1
BLAST of Spo24683.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2C8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114660 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 6.000e-28 Identity = 73/106 (68.87%), Postives = 80/106 (75.47%), Query Frame = 1
BLAST of Spo24683.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4D4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_114650 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 1.000e-27 Identity = 72/106 (67.92%), Postives = 81/106 (76.42%), Query Frame = 1
BLAST of Spo24683.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXT1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_129340 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 7.500e-23 Identity = 62/92 (67.39%), Postives = 71/92 (77.17%), Query Frame = 1
BLAST of Spo24683.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CER6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g116170 PE=4 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 3.200e-13 Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = 1
BLAST of Spo24683.1 vs. ExPASy Swiss-Prot
Match: ITR3_SPIOL (Trypsin inhibitor 3 OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 4.900e-7 Identity = 25/37 (67.57%), Postives = 26/37 (70.27%), Query Frame = 1
BLAST of Spo24683.1 vs. ExPASy Swiss-Prot
Match: ITR2_SPIOL (Trypsin inhibitor 2 OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 1.900e-6 Identity = 24/36 (66.67%), Postives = 25/36 (69.44%), Query Frame = 1
BLAST of Spo24683.1 vs. ExPASy Swiss-Prot
Match: ITR1_SPIOL (Trypsin inhibitor 1 OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 9.200e-6 Identity = 23/35 (65.71%), Postives = 24/35 (68.57%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo24683.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo24683.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo24683.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo24683.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|