Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTCCCCAATTTCATCTTCTCCTCTTCACCACTACGACCCTCCTACTCTCGGCCACTCTTTCCACCGCAACCACAGCCGCTTATCCCCCTTCATACGGCGAAGAGTCATGCGGATTCTCCGGTGGCACTGCCGCCCTCACCCCGGAAAGAAGAGACACATACGGTAATGGACGGATAATCGACATCACCCACCGCATAAACCCCAATATGCCAGCGTTCGGTTCTCCCGATGGTGTTGGTCAGTTCATTTGGCTCGTCAACAGCATGAAAAACGGGTCAATTGCTAATAATTCCGAGATGAAACTCCCCTCTCATACTGGGACCCACGTCGATGCTCCTAGCCATTTCTATGATAAGTACTTGGATGCTGGTTTTGATGTGGATTCCCTTGATCTTGATGTCCTTAATGGTAATTCTTAAGCCTTTGTGGGGTTGACCCATTTGTTTGATTTTAGAAACTGTTAGCTTTTGCGGGTTTAATTATTATTTTAGGTGTCGAGTGACTTTAAATCGTTGTAATTCTCTGTGTTTCTGTTAAACACGCGTTCATTGGCTGTTACGTTGAATTAGATGATGTGATGGTGTGGAGCTACTATTTTAGGTGGAATTTCAATTCAACTTGTGATTGCTTTTGGTAGTGTTTTCGGCTCTACTCACACTGAGGTGTGCAGAATCAATGATATGCCAAAATCACTTTCTTGTTTTGGTTAATGCTTATTATGATGAATATTGATTGATTATGTGCACTTGATTACAGGTCCAGCACTGTTGGTTGATGTACCGAGAGATAGCAACATAACT ATGATTCCCCAATTTCATCTTCTCCTCTTCACCACTACGACCCTCCTACTCTCGGCCACTCTTTCCACCGCAACCACAGCCGCTTATCCCCCTTCATACGGCGAAGAGTCATGCGGATTCTCCGGTGGCACTGCCGCCCTCACCCCGGAAAGAAGAGACACATACGGTAATGGACGGATAATCGACATCACCCACCGCATAAACCCCAATATGCCAGCGTTCGGTTCTCCCGATGGTGTTGGTCAGTTCATTTGGCTCGTCAACAGCATGAAAAACGGGTCAATTGCTAATAATTCCGAGATGAAACTCCCCTCTCATACTGGGACCCACGTCGATGCTCCTAGCCATTTCTATGATAAGTACTTGGATGCTGGTTTTGATGTGGATTCCCTTGATCTTGATGTCCTTAATGGTCCAGCACTGTTGGTTGATGTACCGAGAGATAGCAACATAACT ATGATTCCCCAATTTCATCTTCTCCTCTTCACCACTACGACCCTCCTACTCTCGGCCACTCTTTCCACCGCAACCACAGCCGCTTATCCCCCTTCATACGGCGAAGAGTCATGCGGATTCTCCGGTGGCACTGCCGCCCTCACCCCGGAAAGAAGAGACACATACGGTAATGGACGGATAATCGACATCACCCACCGCATAAACCCCAATATGCCAGCGTTCGGTTCTCCCGATGGTGTTGGTCAGTTCATTTGGCTCGTCAACAGCATGAAAAACGGGTCAATTGCTAATAATTCCGAGATGAAACTCCCCTCTCATACTGGGACCCACGTCGATGCTCCTAGCCATTTCTATGATAAGTACTTGGATGCTGGTTTTGATGTGGATTCCCTTGATCTTGATGTCCTTAATGGTCCAGCACTGTTGGTTGATGTACCGAGAGATAGCAACATAACT MIPQFHLLLFTTTTLLLSATLSTATTAAYPPSYGEESCGFSGGTAALTPERRDTYGNGRIIDITHRINPNMPAFGSPDGVGQFIWLVNSMKNGSIANNSEMKLPSHTGTHVDAPSHFYDKYLDAGFDVDSLDLDVLNGPALLVDVPRDSNIT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo24647.1 vs. NCBI nr
Match: gi|902173119|gb|KNA08225.1| (hypothetical protein SOVF_164570 [Spinacia oleracea]) HSP 1 Score: 305.1 bits (780), Expect = 7.000e-80 Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 1
BLAST of Spo24647.1 vs. NCBI nr
Match: gi|731360253|ref|XP_010691711.1| (PREDICTED: uncharacterized protein LOC104904973 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 224.2 bits (570), Expect = 1.600e-55 Identity = 117/147 (79.59%), Postives = 123/147 (83.67%), Query Frame = 1
BLAST of Spo24647.1 vs. NCBI nr
Match: gi|731360249|ref|XP_010691708.1| (PREDICTED: uncharacterized protein LOC104904971 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 212.2 bits (539), Expect = 6.200e-52 Identity = 111/147 (75.51%), Postives = 120/147 (81.63%), Query Frame = 1
BLAST of Spo24647.1 vs. NCBI nr
Match: gi|731362195|ref|XP_010692763.1| (PREDICTED: uncharacterized protein LOC104905825 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 208.0 bits (528), Expect = 1.200e-50 Identity = 113/151 (74.83%), Postives = 122/151 (80.79%), Query Frame = 1
BLAST of Spo24647.1 vs. NCBI nr
Match: gi|731362197|ref|XP_010692764.1| (PREDICTED: uncharacterized protein LOC104905825 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 208.0 bits (528), Expect = 1.200e-50 Identity = 113/151 (74.83%), Postives = 122/151 (80.79%), Query Frame = 1
BLAST of Spo24647.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLT5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_164570 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 4.900e-80 Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 1
BLAST of Spo24647.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIB1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g224110 PE=4 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 1.100e-55 Identity = 117/147 (79.59%), Postives = 123/147 (83.67%), Query Frame = 1
BLAST of Spo24647.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EDY0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g224130 PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 4.300e-52 Identity = 111/147 (75.51%), Postives = 120/147 (81.63%), Query Frame = 1
BLAST of Spo24647.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BHR4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g022480 PE=4 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 8.100e-51 Identity = 113/151 (74.83%), Postives = 122/151 (80.79%), Query Frame = 1
BLAST of Spo24647.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BF82_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g022480 PE=4 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 8.100e-51 Identity = 113/151 (74.83%), Postives = 122/151 (80.79%), Query Frame = 1
BLAST of Spo24647.1 vs. ExPASy Swiss-Prot
Match: KYNB_SALRD (Kynurenine formamidase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=kynB PE=3 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 6.700e-6 Identity = 31/86 (36.05%), Postives = 44/86 (51.16%), Query Frame = 1
BLAST of Spo24647.1 vs. TAIR (Arabidopsis)
Match: AT4G35220.1 (Cyclase family protein) HSP 1 Score: 169.9 bits (429), Expect = 1.200e-42 Identity = 89/148 (60.14%), Postives = 106/148 (71.62%), Query Frame = 1
BLAST of Spo24647.1 vs. TAIR (Arabidopsis)
Match: AT4G34180.1 (Cyclase family protein) HSP 1 Score: 143.7 bits (361), Expect = 9.500e-35 Identity = 70/105 (66.67%), Postives = 81/105 (77.14%), Query Frame = 1
BLAST of Spo24647.1 vs. TAIR (Arabidopsis)
Match: AT1G44542.1 (Cyclase family protein) HSP 1 Score: 127.9 bits (320), Expect = 5.400e-30 Identity = 72/152 (47.37%), Postives = 95/152 (62.50%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo24647.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo24647.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo24647.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo24647.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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