Spo24633 (gene)

Overview
NameSpo24633
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L19, chloroplastic (CL19) (Precursor)
LocationSpoScf_72201 : 107 .. 454 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGG

mRNA sequence

GCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGG

Coding sequence (CDS)

GCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGG

Protein sequence

ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24633.1Spo24633.1mRNA


Homology
BLAST of Spo24633.1 vs. NCBI nr
Match: gi|75107094|sp|P82413.2|RK19_SPIOL (RecName: Full=50S ribosomal protein L19, chloroplastic; AltName: Full=CL19; Flags: Precursor)

HSP 1 Score: 213.8 bits (543), Expect = 1.600e-52
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF
Sbjct: 9   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG
Sbjct: 69  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 124

BLAST of Spo24633.1 vs. NCBI nr
Match: gi|731332290|ref|XP_010677124.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 142.5 bits (358), Expect = 4.600e-31
Identity = 87/120 (72.50%), Postives = 94/120 (78.33%), Query Frame = 1

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALL IPSNHSLQCPPLKKQLGFP+++ RRF LS N R N MVSRASSNLFSSNFSSIF F
Sbjct: 9   ALLTIPSNHSLQCPPLKKQLGFPVETYRRFFLS-NSRGNSMVSRASSNLFSSNFSSIFDF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEA----EERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAE+SS A AE    + EEELP  SEAEA    E R P + R KLGD+MG
Sbjct: 69  PARNSFVVRSEAEESSAALAE----IVEEELPENSEAEAVEEDEPRSPFKPRTKLGDVMG 123

BLAST of Spo24633.1 vs. NCBI nr
Match: gi|1000941993|ref|XP_015582459.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic [Ricinus communis])

HSP 1 Score: 59.7 bits (143), Expect = 3.900e-6
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 1

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSN--CRSNLMVSRASSNLFSSNFSSIF 60
           AL++IP N + QCPP +K LGF    +R  S  SN  CR +L     SSN F SN  SI 
Sbjct: 9   ALVLIPINPT-QCPPPRK-LGFSAAVHRSCSSLSNSTCRVSL-----SSNSFGSNLDSII 68

Query: 61  SFPARNSFVVRSEAEDSSDAP-AESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           S  A+  F+ R+E+E+S+ A  AE  + V E E   E++AE  E  PR+  +KLGDIMG
Sbjct: 69  SAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQEEAKAEEIEIEPRKPIIKLGDIMG 120

BLAST of Spo24633.1 vs. NCBI nr
Match: gi|223528581|gb|EEF30602.1| (50S ribosomal protein L19, putative [Ricinus communis])

HSP 1 Score: 59.7 bits (143), Expect = 3.900e-6
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 1

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSN--CRSNLMVSRASSNLFSSNFSSIF 60
           AL++IP N + QCPP +K LGF    +R  S  SN  CR +L     SSN F SN  SI 
Sbjct: 9   ALVLIPINPT-QCPPPRK-LGFSAAVHRSCSSLSNSTCRVSL-----SSNSFGSNLDSII 68

Query: 61  SFPARNSFVVRSEAEDSSDAP-AESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           S  A+  F+ R+E+E+S+ A  AE  + V E E   E++AE  E  PR+  +KLGDIMG
Sbjct: 69  SAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQEEAKAEEIEIEPRKPIIKLGDIMG 120

BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR20_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_150800 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.100e-52
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF
Sbjct: 9   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG
Sbjct: 69  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 124

BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CE33_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g105130 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.200e-31
Identity = 87/120 (72.50%), Postives = 94/120 (78.33%), Query Frame = 1

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALL IPSNHSLQCPPLKKQLGFP+++ RRF LS N R N MVSRASSNLFSSNFSSIF F
Sbjct: 9   ALLTIPSNHSLQCPPLKKQLGFPVETYRRFFLS-NSRGNSMVSRASSNLFSSNFSSIFDF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEA----EERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAE+SS A AE    + EEELP  SEAEA    E R P + R KLGD+MG
Sbjct: 69  PARNSFVVRSEAEESSAALAE----IVEEELPENSEAEAVEEDEPRSPFKPRTKLGDVMG 123

BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Match: B9T0L9_RICCO (50S ribosomal protein L19, putative OS=Ricinus communis GN=RCOM_0192750 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.700e-6
Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 1

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSN--CRSNLMVSRASSNLFSSNFSSIF 60
           AL++IP N + QCPP +K LGF    +R  S  SN  CR +L     SSN F SN  SI 
Sbjct: 9   ALVLIPINPT-QCPPPRK-LGFSAAVHRSCSSLSNSTCRVSL-----SSNSFGSNLDSII 68

Query: 61  SFPARNSFVVRSEAEDSSDAP-AESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           S  A+  F+ R+E+E+S+ A  AE  + V E E   E++AE  E  PR+  +KLGDIMG
Sbjct: 69  SAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQEEAKAEEIEIEPRKPIIKLGDIMG 120

BLAST of Spo24633.1 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.000e-54
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

		  

Query: 1   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 60
           ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF
Sbjct: 9   ALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSF 68

Query: 61  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 117
           PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG
Sbjct: 69  PARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMG 124

The following BLAST results are available for this feature:
BLAST of Spo24633.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4
Match NameE-valueIdentityDescription
gi|75107094|sp|P82413.2|RK19_SPIOL1.6e-52100.RecName: Full=50S ribosomal pr... [more]
gi|731332290|ref|XP_010677124.1|4.6e-3172.5PREDICTED: 50S ribosomal prote... [more]
gi|1000941993|ref|XP_015582459.1|3.9e-645.3PREDICTED: 50S ribosomal prote... [more]
gi|223528581|gb|EEF30602.1|3.9e-645.350S ribosomal protein L19, put... [more]
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BLAST of Spo24633.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QR20_SPIOL1.1e-52100.Uncharacterized protein OS=Spi... [more]
A0A0J8CE33_BETVU3.2e-3172.5Uncharacterized protein OS=Bet... [more]
B9T0L9_RICCO2.7e-645.350S ribosomal protein L19, put... [more]
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BLAST of Spo24633.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RK19_SPIOL1.0e-54100.50S ribosomal protein L19, chl... [more]
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BLAST of Spo24633.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0015031 protein transport
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009813 flavonoid biosynthetic process
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0032259 methylation
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0045727 positive regulation of translation
biological_process GO:0032544 plastid translation
biological_process GO:0007623 circadian rhythm
biological_process GO:0009658 chloroplast organization
biological_process GO:1901360 organic cyclic compound metabolic process
biological_process GO:0010275 NAD(P)H dehydrogenase complex assembly
biological_process GO:0046483 heterocycle metabolic process
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0006725 cellular aromatic compound metabolic process
biological_process GO:0006412 translation
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0016070 RNA metabolic process
biological_process GO:0010628 positive regulation of gene expression
biological_process GO:0032502 developmental process
biological_process GO:0009987 cellular process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0051607 defense response to virus
biological_process GO:0044237 cellular metabolic process
biological_process GO:0009409 response to cold
biological_process GO:0007165 signal transduction
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006281 DNA repair
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006457 protein folding
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0016556 mRNA modification
biological_process GO:0000023 maltose metabolic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0006782 protoporphyrinogen IX biosynthetic process
biological_process GO:0048481 plant ovule development
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0018160 peptidyl-pyrromethane cofactor linkage
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0010239 chloroplast mRNA processing
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0034051 negative regulation of plant-type hypersensitive response
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015979 photosynthesis
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0042793 plastid transcription
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0042742 defense response to bacterium
biological_process GO:0009902 chloroplast relocation
biological_process GO:0006397 mRNA processing
biological_process GO:0009642 response to light intensity
biological_process GO:0016310 phosphorylation
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0019748 secondary metabolic process
biological_process GO:0010468 regulation of gene expression
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0030001 metal ion transport
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0009735 response to cytokinin
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006364 rRNA processing
biological_process GO:0009306 protein secretion
biological_process GO:0006007 glucose catabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0042545 cell wall modification
biological_process GO:0030154 cell differentiation
biological_process GO:0043953 protein transport by the Tat complex
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0045038 protein import into chloroplast thylakoid membrane
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0006546 glycine catabolic process
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009106 lipoate metabolic process
biological_process GO:0009108 coenzyme biosynthetic process
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0009295 nucleoid
cellular_component GO:0009579 thylakoid
cellular_component GO:0009501 amyloplast
cellular_component GO:0009509 chromoplast
cellular_component GO:0009513 etioplast
cellular_component GO:0009537 proplastid
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0044434 chloroplast part
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0042646 plastid nucleoid
cellular_component GO:0048046 apoplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0033281 TAT protein transport complex
cellular_component GO:0000311 plastid large ribosomal subunit
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0010287 plastoglobule
cellular_component GO:0010319 stromule
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009349 riboflavin synthase complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005634 nucleus
molecular_function GO:0009977 proton motive force dependent protein transmembrane transporter activity
molecular_function GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0000906 6,7-dimethyl-8-ribityllumazine synthase activity
molecular_function GO:0004418 hydroxymethylbilane synthase activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003904 deoxyribodipyrimidine photo-lyase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0047134 protein-disulfide reductase activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0008266 poly(U) RNA binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0045430 chalcone isomerase activity
molecular_function GO:0005504 fatty acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0009881 photoreceptor activity
RNA-Seq Expression