Spo24625 (gene)

Overview
NameSpo24625
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionrRNA intron-encoded homing endonuclease
LocationSpoScf_24737 : 174 .. 862 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAAGATTCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATAGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGNGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCT

mRNA sequence

AAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAAGATTCCGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCT

Coding sequence (CDS)

AAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATTATAAGATTCCGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACGCCGCCGGCACCTTATGAGAAATCAAAGACGCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCT

Protein sequence

KKLVVGPWGGTTGPPFGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIRFRRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEPAA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24625.1Spo24625.1mRNA


Homology
[Close]
BLAST of Spo24625.1 vs. NCBI nr
Match: gi|703137890|ref|XP_010106597.1| (hypothetical protein L484_002552 [Morus notabilis])

HSP 1 Score: 251.9 bits (642), Expect = 7.600e-64
Identity = 130/148 (87.84%), Postives = 131/148 (88.51%), Query Frame = 1 

		  

Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIRFRRTTAKAF 76
           GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNII FRRTTAKAF
Sbjct: 55  GVHRSARPFCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAF 114

Query: 77  AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKTPPAPYEKSKF 136
           AKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FR          TP APYEKSKF
Sbjct: 115 AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFR----------TPLAPYEKSKF 174

Query: 137 LGSGGSMVARLKLKGIDGRAPPGVEPAA 165
           LGSGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 175 LGSGGSMVARLKLKGIDGRAPPGVEPAA 192
[Close]
BLAST of Spo24625.1 vs. NCBI nr
Match: gi|823127874|ref|XP_012440607.1| (PREDICTED: uncharacterized protein LOC105765883 [Gossypium raimondii])

HSP 1 Score: 216.1 bits (549), Expect = 4.600e-53
Identity = 116/161 (72.05%), Postives = 122/161 (75.78%), Query Frame = 1 

		  

Query: 1   KKLVVGPWGGTTGPPFGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTL 60
           KKLVVG  GG+ GPP G HR +R + RRCAPGLNWPGR+S  VTLKKLECSKQAYA    
Sbjct: 41  KKLVVGLRGGSAGPPHGEHRSARPYCRRCAPGLNWPGRSSDAVTLKKLECSKQAYA---- 100

Query: 61  AWDNIIRFRRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAP 120
                         +FAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTPPAP
Sbjct: 101 --------------SFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAP 160

Query: 121 YEKSKTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVE 162
           YEKSK+          LGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 161 YEKSKS----------LGSGGSMVARLKLKGIDGRAPPGVE 173
[Close]
BLAST of Spo24625.1 vs. NCBI nr
Match: gi|694380941|ref|XP_009366572.1| (PREDICTED: uncharacterized protein LOC103956333 [Pyrus x bretschneideri])

HSP 1 Score: 214.9 bits (546), Expect = 1.000e-52
Identity = 117/152 (76.97%), Postives = 121/152 (79.61%), Query Frame = 1 

		  

Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIRFR-----RT 76
           GVHR +R F RR APGLNWPGRASG VTLKKLECSKQ +    LA+   +        RT
Sbjct: 228 GVHRSARPFCRRYAPGLNWPGRASGAVTLKKLECSKQDFGPILLAFGIGVMINRDSRGRT 287

Query: 77  TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKTPPAPY 136
           TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFR          TPPAPY
Sbjct: 288 TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFR----------TPPAPY 347

Query: 137 EKSKFLGSGGSMVARLKLKGIDGRAPPGVEPA 164
           EKSKFLGSGGSMVARLKLKGIDGRAPPGVEPA
Sbjct: 348 EKSKFLGSGGSMVARLKLKGIDGRAPPGVEPA 369
[Close]
BLAST of Spo24625.1 vs. NCBI nr
Match: gi|922327155|ref|XP_013442970.1| (hypothetical protein MTR_0055s0130 [Medicago truncatula])

HSP 1 Score: 209.5 bits (532), Expect = 4.300e-51
Identity = 115/153 (75.16%), Postives = 120/153 (78.43%), Query Frame = 1 

		  

Query: 16  FGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIRFR-----R 75
           +GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQ      LA+   +        R
Sbjct: 485 YGVHRLARPFCRRCAPGLNWPGRASGAVTLKKLECSKQDSDPIVLAFGIGVMINRDSRGR 544

Query: 76  TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKTPPAP 135
           TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSK+    
Sbjct: 545 TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKS---- 604

Query: 136 YEKSKFLGSGGSMVARLKLKGIDGRAPPGVEPA 164
                 LGSGGSMVARLKLKGIDGRAPPGVEPA
Sbjct: 605 ------LGSGGSMVARLKLKGIDGRAPPGVEPA 627
[Close]
BLAST of Spo24625.1 vs. NCBI nr
Match: gi|947068904|gb|KRH17795.1| (hypothetical protein GLYMA_13G016700 [Glycine max])

HSP 1 Score: 206.8 bits (525), Expect = 2.800e-50
Identity = 115/153 (75.16%), Postives = 119/153 (77.78%), Query Frame = 1 

		  

Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIRFR-----RT 76
           GVHR +R F RRCAP LNWPGRASG VTLKKLECSKQ      LA+   +        RT
Sbjct: 128 GVHRSARPFCRRCAPVLNWPGRASGAVTLKKLECSKQDSDPIVLAFGIGVMINRDSRGRT 187

Query: 77  TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKTPPAPY 136
           TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSK+     
Sbjct: 188 TAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKS----- 247

Query: 137 EKSKFLGSGGSMVARLKLKGIDGRAPPGVEPAA 165
                LGSGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 248 -----LGSGGSMVARLKLKGIDGRAPPGVEPAA 270
[Close]
BLAST of Spo24625.1 vs. UniProtKB/TrEMBL
Match: M1DUP9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400044276 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.300e-65
Identity = 132/151 (87.42%), Postives = 132/151 (87.42%), Query Frame = 1 

		  

Query: 14  PPFGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIRFRRTTA 73
           P   VHR SR F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNII FRRTTA
Sbjct: 45  PCICVHRSSRPFCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTA 104

Query: 74  KAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKTPPAPYEK 133
           KAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FR          TPPAPYEK
Sbjct: 105 KAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFR----------TPPAPYEK 164

Query: 134 SKFLGSGGSMVARLKLKGIDGRAPPGVEPAA 165
           SKFLGSGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 165 SKFLGSGGSMVARLKLKGIDGRAPPGVEPAA 185
[Close]
BLAST of Spo24625.1 vs. UniProtKB/TrEMBL
Match: W9SJ11_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002552 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.300e-64
Identity = 130/148 (87.84%), Postives = 131/148 (88.51%), Query Frame = 1 

		  

Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIRFRRTTAKAF 76
           GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNII FRRTTAKAF
Sbjct: 55  GVHRSARPFCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAF 114

Query: 77  AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKTPPAPYEKSKF 136
           AKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FR          TP APYEKSKF
Sbjct: 115 AKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFR----------TPLAPYEKSKF 174

Query: 137 LGSGGSMVARLKLKGIDGRAPPGVEPAA 165
           LGSGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 175 LGSGGSMVARLKLKGIDGRAPPGVEPAA 192
[Close]
BLAST of Spo24625.1 vs. UniProtKB/TrEMBL
Match: M1DB49_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035737 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.600e-60
Identity = 123/140 (87.86%), Postives = 125/140 (89.29%), Query Frame = 1 

		  

Query: 25  FRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIRFRRTTAKAFAKDVFINQ 84
           F RRCAPGLNWPGRASG VTLKKLECSKQAYALYTLAWDNII FRRTTAKAFAKDVFINQ
Sbjct: 5   FCRRCAPGLNWPGRASGAVTLKKLECSKQAYALYTLAWDNIIGFRRTTAKAFAKDVFINQ 64

Query: 85  ERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKTPPAPYEKSKFLGSGGSMV 144
           ERKLGARRRSDTVLVSTINDADQGSADV FR          TPPAPYEKSKFLGSGGS+V
Sbjct: 65  ERKLGARRRSDTVLVSTINDADQGSADVAFR----------TPPAPYEKSKFLGSGGSIV 124

Query: 145 ARLKLKGIDGRAPPGVEPAA 165
           ARLKLKGIDG+APPGVE AA
Sbjct: 125 ARLKLKGIDGKAPPGVELAA 134
[Close]
BLAST of Spo24625.1 vs. UniProtKB/TrEMBL
Match: A0A0D2ZQ67_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.900e-55
Identity = 119/152 (78.29%), Postives = 123/152 (80.92%), Query Frame = 1 

		  

Query: 17  GVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIRFRRTTA--- 76
           G+HR +  F R+ APGLNWPGRASG VTLKKLECSKQAY LYTLAWDNII F    A   
Sbjct: 189 GMHRSACPFCRQYAPGLNWPGRASGAVTLKKLECSKQAYTLYTLAWDNIIGFLSYCAGLQ 248

Query: 77  -KAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKTPPAPYE 136
            + FAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FR          TP APYE
Sbjct: 249 DRTFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFR----------TPLAPYE 308

Query: 137 KSKFLGSGGSMVARLKLKGIDGRAPPGVEPAA 165
           KSKFLGSGGSMVARLKLKGIDGRAPPGVEPAA
Sbjct: 309 KSKFLGSGGSMVARLKLKGIDGRAPPGVEPAA 330
[Close]
BLAST of Spo24625.1 vs. UniProtKB/TrEMBL
Match: A0A072TTW7_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0055s0130 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.000e-51
Identity = 115/153 (75.16%), Postives = 120/153 (78.43%), Query Frame = 1 

		  

Query: 16  FGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLECSKQAYALYTLAWDNIIRFR-----R 75
           +GVHR +R F RRCAPGLNWPGRASG VTLKKLECSKQ      LA+   +        R
Sbjct: 485 YGVHRLARPFCRRCAPGLNWPGRASGAVTLKKLECSKQDSDPIVLAFGIGVMINRDSRGR 544

Query: 76  TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSKTPPAP 135
           TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADV FRTP APYEKSK+    
Sbjct: 545 TTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPLAPYEKSKS---- 604

Query: 136 YEKSKFLGSGGSMVARLKLKGIDGRAPPGVEPA 164
                 LGSGGSMVARLKLKGIDGRAPPGVEPA
Sbjct: 605 ------LGSGGSMVARLKLKGIDGRAPPGVEPA 627
The following BLAST results are available for this feature:
BLAST of Spo24625.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|703137890|ref|XP_010106597.1|7.6e-6487.8hypothetical protein L484_0025... [more]
gi|823127874|ref|XP_012440607.1|4.6e-5372.0PREDICTED: uncharacterized pro... [more]
gi|694380941|ref|XP_009366572.1|1.0e-5276.9PREDICTED: uncharacterized pro... [more]
gi|922327155|ref|XP_013442970.1|4.3e-5175.1hypothetical protein MTR_0055s... [more]
gi|947068904|gb|KRH17795.1|2.8e-5075.1hypothetical protein GLYMA_13G... [more]
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BLAST of Spo24625.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
M1DUP9_SOLTU6.3e-6587.4Uncharacterized protein OS=Sol... [more]
W9SJ11_9ROSA5.3e-6487.8Uncharacterized protein OS=Mor... [more]
M1DB49_SOLTU3.6e-6087.8Uncharacterized protein OS=Sol... [more]
A0A0D2ZQ67_BRAOL5.9e-5578.2Uncharacterized protein OS=Bra... [more]
A0A072TTW7_MEDTR3.0e-5175.1Uncharacterized protein OS=Med... [more]
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BLAST of Spo24625.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24625.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34410FAMILY NOT NAMEDcoord: 59..164
score: 5.5
NoneNo IPR availablePANTHERPTHR34410:SF2SUBFAMILY NOT NAMEDcoord: 59..164
score: 5.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006506 GPI anchor biosynthetic process
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0009657 plastid organization
biological_process GO:0015031 protein transport
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0060255 regulation of macromolecule metabolic process
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0044070 regulation of anion transport
biological_process GO:0006396 RNA processing
biological_process GO:0019722 calcium-mediated signaling
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0005513 detection of calcium ion
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0010099 regulation of photomorphogenesis
biological_process GO:0009612 response to mechanical stimulus
biological_process GO:0016049 cell growth
biological_process GO:0000902 cell morphogenesis
biological_process GO:0007030 Golgi organization
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0044085 cellular component biogenesis
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0009698 phenylpropanoid metabolic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0006782 protoporphyrinogen IX biosynthetic process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0009407 toxin catabolic process
biological_process GO:0046777 protein autophosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0042545 cell wall modification
biological_process GO:0006508 proteolysis
biological_process GO:0009058 biosynthetic process
biological_process GO:0080167 response to karrikin
biological_process GO:0008152 metabolic process
biological_process GO:0006810 transport
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0009735 response to cytokinin
biological_process GO:0051788 response to misfolded protein
biological_process GO:0001510 RNA methylation
biological_process GO:0006857 oligopeptide transport
biological_process GO:0007033 vacuole organization
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0006465 signal peptide processing
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0009932 cell tip growth
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0009651 response to salt stress
biological_process GO:0006629 lipid metabolic process
biological_process GO:0009423 chorismate biosynthetic process
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0033587 shikimate biosynthetic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0030163 protein catabolic process
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0006979 response to oxidative stress
biological_process GO:0052542 defense response by callose deposition
biological_process GO:0042742 defense response to bacterium
biological_process GO:0050832 defense response to fungus
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0000165 MAPK cascade
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0043069 negative regulation of programmed cell death
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0030001 metal ion transport
biological_process GO:0010337 regulation of salicylic acid metabolic process
biological_process GO:0002679 respiratory burst involved in defense response
biological_process GO:0010200 response to chitin
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0043248 proteasome assembly
biological_process GO:0009060 aerobic respiration
biological_process GO:0006096 glycolytic process
biological_process GO:0006850 mitochondrial pyruvate transmembrane transport
biological_process GO:0006301 postreplication repair
biological_process GO:0046686 response to cadmium ion
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0016310 phosphorylation
biological_process GO:0055085 transmembrane transport
biological_process GO:0009765 photosynthesis, light harvesting
biological_process GO:0006909 phagocytosis
biological_process GO:0006499 N-terminal protein myristoylation
biological_process GO:0009640 photomorphogenesis
biological_process GO:0000338 protein deneddylation
biological_process GO:0051604 protein maturation
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0009088 threonine biosynthetic process
biological_process GO:0008643 carbohydrate transport
biological_process GO:0006605 protein targeting
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006007 glucose catabolic process
biological_process GO:0006897 endocytosis
biological_process GO:0051301 cell division
biological_process GO:0009790 embryo development
biological_process GO:0043631 RNA polyadenylation
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0016123 xanthophyll biosynthetic process
biological_process GO:2001295 malonyl-CoA biosynthetic process
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0016120 carotene biosynthetic process
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0009744 response to sucrose
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006364 rRNA processing
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0009644 response to high light intensity
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009853 photorespiration
biological_process GO:0010155 regulation of proton transport
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009768 photosynthesis, light harvesting in photosystem I
cellular_component GO:0046658 anchored component of plasma membrane
cellular_component GO:0005839 proteasome core complex
cellular_component GO:0005829 cytosol
cellular_component GO:0005576 extracellular region
cellular_component GO:0009707 chloroplast outer membrane
cellular_component GO:0009343 biotin carboxylase complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0005768 endosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009523 photosystem II
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0030131 clathrin adaptor complex
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005634 nucleus
cellular_component GO:0000502 proteasome complex
cellular_component GO:0009522 photosystem I
cellular_component GO:0030659 cytoplasmic vesicle membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0017177 glucosidase II complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0009524 phragmoplast
cellular_component GO:0000786 nucleosome
cellular_component GO:0032991 protein-containing complex
cellular_component GO:0008540 proteasome regulatory particle, base subcomplex
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005618 cell wall
cellular_component GO:0033179 proton-transporting V-type ATPase, V0 domain
cellular_component GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005730 nucleolus
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0009506 plasmodesma
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
cellular_component GO:0016020 membrane
cellular_component GO:0016604 nuclear body
cellular_component GO:0035145 exon-exon junction complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0042651 thylakoid membrane
cellular_component GO:0005741 mitochondrial outer membrane
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005789 endoplasmic reticulum membrane
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0070330 aromatase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0020037 heme binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0008081 phosphoric diester hydrolase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0042802 identical protein binding
molecular_function GO:0003856 3-dehydroquinate synthase activity
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0010181 FMN binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0003958 NADPH-hemoprotein reductase activity
molecular_function GO:0004683 calmodulin-dependent protein kinase activity
molecular_function GO:0004655 porphobilinogen synthase activity
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0019706 protein-cysteine S-palmitoyltransferase activity
molecular_function GO:0000035 acyl binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0000062 fatty-acyl-CoA binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0005543 phospholipid binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0051920 peroxiredoxin activity
molecular_function GO:0004601 peroxidase activity
molecular_function GO:0045435 lycopene epsilon cyclase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0004652 polynucleotide adenylyltransferase activity
molecular_function GO:0008308 voltage-gated anion channel activity
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003989 acetyl-CoA carboxylase activity
molecular_function GO:0031177 phosphopantetheine binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004575 sucrose alpha-glucosidase activity
molecular_function GO:0005351 carbohydrate:proton symporter activity
molecular_function GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
molecular_function GO:0004075 biotin carboxylase activity
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0004072 aspartate kinase activity
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0003950 NAD+ ADP-ribosyltransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0035673 oligopeptide transmembrane transporter activity
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016597 amino acid binding
molecular_function GO:0003735 structural constituent of ribosome
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo009360.99Barchart | Table
Spo146870.99Barchart | Table
Spo122530.99Barchart | Table
Spo008980.99Barchart | Table
Spo050290.99Barchart | Table
Spo036180.97Barchart | Table
Spo192060.95Barchart | Table
Spo141940.94Barchart | Table
Spo134590.83Barchart | Table
Spo122020.81Barchart | Table
Spo144410.80Barchart | Table
Spo271020.77Barchart | Table
Spo121280.76Barchart | Table
Spo019140.76Barchart | Table
Spo049230.74Barchart | Table
Spo121760.74Barchart | Table
Spo019290.74Barchart | Table
Spo148490.74Barchart | Table
Spo140080.73Barchart | Table
Spo020850.73Barchart | Table
Spo117330.73Barchart | Table
Spo129420.73Barchart | Table
Spo001750.73Barchart | Table
Spo096740.72Barchart | Table
Spo068050.72Barchart | Table
Spo248570.72Barchart | Table
Spo216910.72Barchart | Table
Spo206770.72Barchart | Table
Spo156030.72Barchart | Table
Spo036080.72Barchart | Table
Spo057310.72Barchart | Table
Spo052280.71Barchart | Table
Spo027310.71Barchart | Table
Spo060300.71Barchart | Table
Spo062940.71Barchart | Table
Spo069620.71Barchart | Table
Spo167860.71Barchart | Table
Spo200710.71Barchart | Table
Spo085400.70Barchart | Table
Spo130310.70Barchart | Table
Spo098030.70Barchart | Table
Spo185750.70Barchart | Table
Spo168210.70Barchart | Table
Spo066810.70Barchart | Table
Spo227600.69Barchart | Table
Spo209570.69Barchart | Table
Spo055310.69Barchart | Table
Spo169450.69Barchart | Table
Spo185020.69Barchart | Table
Spo154200.69Barchart | Table
Spo059900.69Barchart | Table
Spo258560.69Barchart | Table
Spo012040.69Barchart | Table
Spo239080.69Barchart | Table
Spo105290.68Barchart | Table
Spo006150.68Barchart | Table
Spo089690.68Barchart | Table
Spo105370.68Barchart | Table
Spo126630.68Barchart | Table
Spo033060.68Barchart | Table
Spo144380.68Barchart | Table
Spo032510.68Barchart | Table
Spo025940.68Barchart | Table
Spo021070.68Barchart | Table
Spo160700.68Barchart | Table
Spo172680.68Barchart | Table
Spo173720.68Barchart | Table
Spo181850.68Barchart | Table
Spo184510.68Barchart | Table
Spo231480.68Barchart | Table
Spo237170.68Barchart | Table
Spo247120.68Barchart | Table
Spo066760.67Barchart | Table
Spo173710.67Barchart | Table
Spo155170.67Barchart | Table
Spo181030.67Barchart | Table
Spo016950.67Barchart | Table
Spo198740.67Barchart | Table
Spo273470.67Barchart | Table
Spo012610.67Barchart | Table
Spo122010.67Barchart | Table
Spo130290.67Barchart | Table
Spo042540.67Barchart | Table
Spo033810.67Barchart | Table
Spo061990.66Barchart | Table
Spo184590.66Barchart | Table
Spo055140.66Barchart | Table
Spo055350.66Barchart | Table
Spo110980.66Barchart | Table
Spo195580.66Barchart | Table
Spo231230.66Barchart | Table
Spo090150.66Barchart | Table
Spo236100.66Barchart | Table
Spo041460.66Barchart | Table
Spo063140.66Barchart | Table
Spo102220.66Barchart | Table
Spo152360.66Barchart | Table
Spo243090.66Barchart | Table
Spo052250.66Barchart | Table
Spo176790.66Barchart | Table
Spo177240.66Barchart | Table
Spo135790.66Barchart | Table
Spo254450.66Barchart | Table
Spo300340.65Barchart | Table
Spo055570.65Barchart | Table
Spo019980.65Barchart | Table
Spo113460.65Barchart | Table
Spo012310.65Barchart | Table
Spo233290.65Barchart | Table
Spo236640.65Barchart | Table
Spo042820.65Barchart | Table