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Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGTCAGAGGAATTCGATTCGAATTCACATCCTAATGGGGTAATTTCCGACAAATCGAGCAATTGTACGAAGAATGAAACCCTAATTCCGTTCAAGATCTTCGTTGGGTACGATCCAAAAGAAGATGTTGCATATGAGGTTTGCAAGCATTCGATTCATAAGCGTTCTTCAATTCCAGTTGAAGTTCACCCGATTAAACAATCTGAATTAAGGGAAATGGGGCTTTATTGGAGAGAAAGGGGGAAATTAGAGAGTACTGAATTCTCTTTTAGTAGGTTTTTAACCCCTCATTTGGCTAATTTTGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCCTCTATTTAGCTGATATTAAGGAATTAGTTGATTTGATTGATGATAAGTATGCGATTATGTGTGTTCAACATGATTATGCACCAAAAGAAACTACTAAAATGGATGGGGCTGTTCAAACTGTTTACCCTAGGAAGAATTGGTCTTCAATGGTGTTGTATAATTGCCAGCACCCGAAAAACAAGGTGTTAACCCCAGAAGTTGTAAACACTCAAACTGGGGCATTCCTTCATAGGTTTCAGTGGTTGGAAGATCATGAAATTGGTGATGTTCCATTTGTGTGGAATTTCCTTGTTGGTCATAACCAGGTTGTTGAGGGTAAGCCCGAGACGGGCCCTAAGGCAATACACTATACTCTCGGCGGGCCTTGGTTTGAGGCGTGGAAGGATTGTGAGTTTGGTGATTTGTGGTTGAAGGAATTGGAGGATTATGAGCAGAGCAAGGAGAAGAAGAAGGAGAAGATTGCTGCTTGAATGGGGTCAGAGGAATTCGATTCGAATTCACATCCTAATGGGGTAATTTCCGACAAATCGAGCAATTGTACGAAGAATGAAACCCTAATTCCGTTCAAGATCTTCGTTGGGTACGATCCAAAAGAAGATGTTGCATATGAGGTTTGCAAGCATTCGATTCATAAGCGTTCTTCAATTCCAGTTGAAGTTCACCCGATTAAACAATCTGAATTAAGGGAAATGGGGCTTTATTGGAGAGAAAGGGGGAAATTAGAGAGTACTGAATTCTCTTTTAGTAGGTTTTTAACCCCTCATTTGGCTAATTTTGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCCTCTATTTAGCTGATATTAAGGAATTAGTTGATTTGATTGATGATAAGTATGCGATTATGTGTGTTCAACATGATTATGCACCAAAAGAAACTACTAAAATGGATGGGGCTGTTCAAACTGTTTACCCTAGGAAGAATTGGTCTTCAATGGTGTTGTATAATTGCCAGCACCCGAAAAACAAGGTGTTAACCCCAGAAGTTGTAAACACTCAAACTGGGGCATTCCTTCATAGGTTTCAGTGGTTGGAAGATCATGAAATTGGTGATGTTCCATTTGTGTGGAATTTCCTTGTTGGTCATAACCAGGTTGTTGAGGGTAAGCCCGAGACGGGCCCTAAGGCAATACACTATACTCTCGGCGGGCCTTGGTTTGAGGCGTGGAAGGATTGTGAGTTTGGTGATTTGTGGTTGAAGGAATTGGAGGATTATGAGCAGAGCAAGGAGAAGAAGAAGGAGAAGATTGCTGCTTGA ATGGGGTCAGAGGAATTCGATTCGAATTCACATCCTAATGGGGTAATTTCCGACAAATCGAGCAATTGTACGAAGAATGAAACCCTAATTCCGTTCAAGATCTTCGTTGGGTACGATCCAAAAGAAGATGTTGCATATGAGGTTTGCAAGCATTCGATTCATAAGCGTTCTTCAATTCCAGTTGAAGTTCACCCGATTAAACAATCTGAATTAAGGGAAATGGGGCTTTATTGGAGAGAAAGGGGGAAATTAGAGAGTACTGAATTCTCTTTTAGTAGGTTTTTAACCCCTCATTTGGCTAATTTTGAGGGTTGGGCTATGTTTGTTGATTGTGATTTCCTCTATTTAGCTGATATTAAGGAATTAGTTGATTTGATTGATGATAAGTATGCGATTATGTGTGTTCAACATGATTATGCACCAAAAGAAACTACTAAAATGGATGGGGCTGTTCAAACTGTTTACCCTAGGAAGAATTGGTCTTCAATGGTGTTGTATAATTGCCAGCACCCGAAAAACAAGGTGTTAACCCCAGAAGTTGTAAACACTCAAACTGGGGCATTCCTTCATAGGTTTCAGTGGTTGGAAGATCATGAAATTGGTGATGTTCCATTTGTGTGGAATTTCCTTGTTGGTCATAACCAGGTTGTTGAGGGTAAGCCCGAGACGGGCCCTAAGGCAATACACTATACTCTCGGCGGGCCTTGGTTTGAGGCGTGGAAGGATTGTGAGTTTGGTGATTTGTGGTTGAAGGAATTGGAGGATTATGAGCAGAGCAAGGAGAAGAAGAAGGAGAAGATTGCTGCTTGA MGSEEFDSNSHPNGVISDKSSNCTKNETLIPFKIFVGYDPKEDVAYEVCKHSIHKRSSIPVEVHPIKQSELREMGLYWRERGKLESTEFSFSRFLTPHLANFEGWAMFVDCDFLYLADIKELVDLIDDKYAIMCVQHDYAPKETTKMDGAVQTVYPRKNWSSMVLYNCQHPKNKVLTPEVVNTQTGAFLHRFQWLEDHEIGDVPFVWNFLVGHNQVVEGKPETGPKAIHYTLGGPWFEAWKDCEFGDLWLKELEDYEQSKEKKKEKIAA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo24622.1 vs. NCBI nr
Match: gi|731359368|ref|XP_010691244.1| (PREDICTED: uncharacterized protein LOC104904634 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 503.8 bits (1296), Expect = 1.800e-139 Identity = 236/266 (88.72%), Postives = 248/266 (93.23%), Query Frame = 1
BLAST of Spo24622.1 vs. NCBI nr
Match: gi|902057457|gb|KNA02884.1| (hypothetical protein SOVF_214420, partial [Spinacia oleracea]) HSP 1 Score: 478.0 bits (1229), Expect = 1.100e-131 Identity = 224/225 (99.56%), Postives = 224/225 (99.56%), Query Frame = 1
BLAST of Spo24622.1 vs. NCBI nr
Match: gi|697131083|ref|XP_009619597.1| (PREDICTED: uncharacterized protein LOC104111574 [Nicotiana tomentosiformis]) HSP 1 Score: 449.9 bits (1156), Expect = 3.100e-123 Identity = 206/263 (78.33%), Postives = 235/263 (89.35%), Query Frame = 1
BLAST of Spo24622.1 vs. NCBI nr
Match: gi|698446230|ref|XP_009768943.1| (PREDICTED: uncharacterized protein LOC104219884 [Nicotiana sylvestris]) HSP 1 Score: 446.8 bits (1148), Expect = 2.600e-122 Identity = 201/251 (80.08%), Postives = 226/251 (90.04%), Query Frame = 1
BLAST of Spo24622.1 vs. NCBI nr
Match: gi|698504273|ref|XP_009797676.1| (PREDICTED: uncharacterized protein LOC104244070 [Nicotiana sylvestris]) HSP 1 Score: 443.4 bits (1139), Expect = 2.900e-121 Identity = 203/250 (81.20%), Postives = 226/250 (90.40%), Query Frame = 1
BLAST of Spo24622.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BH83_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g220370 PE=4 SV=1) HSP 1 Score: 503.8 bits (1296), Expect = 1.300e-139 Identity = 236/266 (88.72%), Postives = 248/266 (93.23%), Query Frame = 1
BLAST of Spo24622.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q700_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_214420 PE=4 SV=1) HSP 1 Score: 478.0 bits (1229), Expect = 7.500e-132 Identity = 224/225 (99.56%), Postives = 224/225 (99.56%), Query Frame = 1
BLAST of Spo24622.1 vs. UniProtKB/TrEMBL
Match: M1BDA2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400016515 PE=4 SV=1) HSP 1 Score: 442.6 bits (1137), Expect = 3.500e-121 Identity = 198/232 (85.34%), Postives = 219/232 (94.40%), Query Frame = 1
BLAST of Spo24622.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HVL4_SOLCH (Uncharacterized protein OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 442.2 bits (1136), Expect = 4.500e-121 Identity = 202/251 (80.48%), Postives = 227/251 (90.44%), Query Frame = 1
BLAST of Spo24622.1 vs. UniProtKB/TrEMBL
Match: K4C7V4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 441.8 bits (1135), Expect = 5.900e-121 Identity = 197/232 (84.91%), Postives = 219/232 (94.40%), Query Frame = 1
BLAST of Spo24622.1 vs. ExPASy Swiss-Prot
Match: CDI_ARATH (Protein CDI OS=Arabidopsis thaliana GN=CDI PE=2 SV=1) HSP 1 Score: 428.3 bits (1100), Expect = 6.100e-119 Identity = 196/253 (77.47%), Postives = 221/253 (87.35%), Query Frame = 1
BLAST of Spo24622.1 vs. TAIR (Arabidopsis)
Match: AT1G64980.1 (Nucleotide-diphospho-sugar transferases superfamily protein) HSP 1 Score: 428.3 bits (1100), Expect = 3.400e-120 Identity = 196/253 (77.47%), Postives = 221/253 (87.35%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo24622.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo24622.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo24622.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo24622.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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