Spo24546 (gene)

Overview
NameSpo24546
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 112521824 .. 112522555 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATGGTCTGATATAAAATACTCCGTAAGTATTAAGGTCATAAAATAATGTGAACTAAACAAGATCAAAGTTGATGATATGAAACTAGAAGCGTTAAAGGATAATACAGAGTGGTACGTGGCACATGGACTTCCTTAGAAACGCGCTTGATTTTACAGTGGAGTATATTATTATTATATTTTAAAAATGCATGGGTGTAGAATTAAGTAGTATAAATATGTTAGGTTTGAATATTTACAAGTAGGGGGGTAGTGGCACTTGAGCATAAAGGGGCAAGTCATTGATTGTCTTTGCACAAGAACATCTCTCTATGTTTGTGTCTTCCCTCTGTCCTCTGAAAAAAGAAACTCATCCGATCCTCTGATTGTATGTCCTGCCTTTGCTTGAATTAGCCTCTTTCTCAATTATCATCTCTTATCGACGATCTCCAGCTTGATAGTTGGAGTACTCGAATACATTTAGTCGCTCATTGCTTATATTGCGTCTGACAAAGCCCGGCCCCCATTAACATTCATCTCCGATCCCACACTAAGTATCTTAATACACAAGCTAGCCAAACCAAACTTAAACTCCTAAAATACGTGCCCTTTTCGCAAAGTAGTATGCAAGCATTACTCAAAACAAATACTTGTATGCAAGCTATTTATAAGTTTCCATAAGTTGGAAACAAATTATTCAACTATCAACACTCAACACTCAACACTCAACACTCAACACTCAACTAGCTAG

mRNA sequence

ATGGGGCAAGTCATTGATTGTCTTTGCACAAGAACATCTCTCTATGTTTGTGTCTTCCCTCTGTCCTCTGAAAAAAGAAACTCATCCGATCCTCTGATTTCGCTCATTGCTTATATTGCGTCTGACAAAGCCCGGCCCCCATTAACATTCATCTCCGATCCCACACTAATAGTATGCAAGCATTACTCAAAACAAATACTTGTATGCAAGCTATTTATAAGTTTCCATAAGTTGGAAACAAATTATTCAACTATCAACACTCAACACTCAACACTCAACACTCAACACTCAACTAGCTAG

Coding sequence (CDS)

ATGGGGCAAGTCATTGATTGTCTTTGCACAAGAACATCTCTCTATGTTTGTGTCTTCCCTCTGTCCTCTGAAAAAAGAAACTCATCCGATCCTCTGATTTCGCTCATTGCTTATATTGCGTCTGACAAAGCCCGGCCCCCATTAACATTCATCTCCGATCCCACACTAATAGTATGCAAGCATTACTCAAAACAAATACTTGTATGCAAGCTATTTATAAGTTTCCATAAGTTGGAAACAAATTATTCAACTATCAACACTCAACACTCAACACTCAACACTCAACACTCAACTAGCTAG

Protein sequence

MGQVIDCLCTRTSLYVCVFPLSSEKRNSSDPLISLIAYIASDKARPPLTFISDPTLIVCKHYSKQILVCKLFISFHKLETNYSTINTQHSTLNTQHSTS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24546.1Spo24546.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo24546.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24546.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24546.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24546.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006816 calcium ion transport
biological_process GO:0009736 cytokinin-activated signaling pathway
biological_process GO:0009294 DNA mediated transformation
biological_process GO:0007030 Golgi organization
biological_process GO:0097502 mannosylation
biological_process GO:0009617 response to bacterium
biological_process GO:0009651 response to salt stress
biological_process GO:0042546 cell wall biogenesis
biological_process GO:0070814 hydrogen sulfide biosynthetic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0000103 sulfate assimilation
cellular_component GO:0005829 cytosol
cellular_component GO:0000136 alpha-1,6-mannosyltransferase complex
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0005524 ATP binding
molecular_function GO:0047259 glucomannan 4-beta-mannosyltransferase activity
molecular_function GO:0051753 mannan synthase activity
molecular_function GO:0004781 sulfate adenylyltransferase (ATP) activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo245450.73Barchart | Table
Spo177400.68Barchart | Table
Spo029190.67Barchart | Table