Spo24108 (gene) | SpinachBase

Overview


Name	Spo24108
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Uv excision repair protein rad23, putative
Location	chr1 : 29869007 .. 29875820 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCTAAATACGGAGTATTAGGGTTTATCTTTAAATAAATGAAGAATCCTGCTAGACAAGGCAAGTATCACCTAATCGCTATCCGGAGCGCAATTGACTTCACCGCCTACATAAATAATCAATTTAATAAATAACTCAAGAGAGAGAAATAAAAAAGGCGTTTCTATAACTCTTCCCCTCTTTTCTCAATCTCTCTCCTCCGGCGAGCGACGACGACGATAACGGAAGGATTTACTCGTCGAAAATGAAAATCTTCGTCAAAACTCTTAAGGGCACTAACTTCGAGATCGAAGCTGATTCCGATGATTCTGTAAATCCACTCACTTCGTTTTTTCCGTTTTTAATTTTGTTTTGATTGATTGATTATTTGTGAAAACCCTACTTAATTTTATCTGTTGCGTATGTCAATTTTATTTGTTTTGGATCCAATTTAGGGTTTAGATTATCTAATTCGTCAATTAGTGTTCGAATTCGTCAATTGAAGGGTTTCTTAATGTTTAGGGAATTAGGTTTTATTGAATTTTGGATTTATTTGTTGATTTGTTTGCTGTTTTTGTGATTGATTTGTTGAGTGTGAAAGTAGTTGATTATGTCTTATGAAATAGTATGCGATTATGTCTTAATTGAGAAGTGTCGGGTTATGGATTTCTGGGGAGGTTCTTGCGATTGTAAGTTTGTGAGAGGAATAGGGTTTAGAAGTGGAATGCCATGATGAAAGGAGAATTGTGTGTTTGATTTTGAATAACATAAGAGGAAGGGATTCATCGTTCAGACTTCAGAGAGAGAGGATATCGTGGCTAGATGAAGATGTATGTGCATGCATTCTGATTGGAGTGTTATCAAATACAAATTACGCAGTAGATTACTGGGCTGGAATTCTGGTGGTTTGTTTAGGAGAATGTGGCAATGTAGCAGGTAATGATACCAATGTAGGGTAAGCACTCACCAACCTGATTGTTTTCACAACCGTGGGCAGTATAGATTAAGCAGGTTCTTGGATATTGTGTTTGTATGTCTGGTGTTCAATAGTACTAGTCTAAATGATTGGATATTTCCTGCACTTGCTTTTTCTTGTATTTCTACATGTTAGAAATAATTTCTGAAGTATGGGAGGTAAGGATATTGAAGGTCCATGCGCGATGCTGTGATCCATCGAAGGGATTCCTTGCCAATTTTTTTTTCATTATTGTGATTTTTTTTTTTTTGATTATGTTTTAGTTTTCTACTTTTCTTATATACTTTTTATGGTGGTTGGATAAGCTGTGATGTCATTCTTTTTCTGAGCCCACCATTTTTTTTTCTCTATTCCTGCTTGGTGTTGAACATTTATGCTGTGTATAGGTTGTGGATGTGAAGAAAAGTATTGAAAAATCGCAAGGTGCAGATGTCTATCCTGCTAGCCTACAAATGCTCATCTTTCAGGGGAAGGTTCTCAAAGATGCAACAACATTGGGAGAAAATGGTGTGGTTGATTGCAGTTTCCTGGTTGTTATGATAAGTAAGGTAGGTTTCTCACAGTTGTTGTTATAAATGCAGGTTGAATTAGTCTTGGAAATTGCTAGCAAGCTTCTATTTCATAAATGCAAACATAACAGGTTTTTCTGTTGAATACCATTAATACTCATTTATTCATCTTAAACTAGGTTTAGGTTATTCTAGGCCTCGTCAATGGTTAAGAGTGCTTTTAGCAACGTCCAAATGTTTGGATGTCAAACAGTTTTATATATTTTCTCTCTCCTAACTTCAAGCATTTGGTCTTCAAAAATGGTTTTCTTGAAGTCATTTTCTTTTTTTGGCTCCCGTCTCTCCCATCTCTCTTCTCTTTCATCTCTCTTATTTCTTTTCGATATTTTAATAGATTATCTCTCCTCAAGTCCAAGCATTTGGATGTTATTAAACATGCTAAGTATCGAGTGTTGGTATATGTTGCTTATGAATTAGTTGTTATTTTAGAAGTTCCTGATTTAAGCTGATAATAATCCCTCTGTAGTCCCTTTGCCCCAGTTTAAGGAGACTTAGGCTAGTGAAAAAAGTAGAAGAAAACGTGGTGGTATTCCCAACTTTAGAGAAAAAGAAGACAGGAAACTTGCAAAAAGTAGATGCTAATACTGGGCCTGTTCGTCACCAGAGTCAATTTTTATTTTTGATTTTAGTTTATTAAATTCATACATACCAGTACAAGTTATAAATCAGCTTTAAGAGTGTACCAATCATGTGTTTGTGTGTGTGGATCTCACAACTAAAAACTTCCATATTCGTGTTAAAATAAAACAACTGTAGTTTTAAAACAAAAATGGTAATGAGCCAGCCCTAAATCCGGGACATCTCAAATAGGAAGATGTTAATGTGGTATGGAATGATAGCTTGTCCATTCACAATCATCTTCTTCTTCTTCTTGCTTTGAAATTGTGTAGTTTGGAAATTAATTATTATTATTCTGTCTGTATTATTTTGGAATTATTGCAGAACAAGCCAGCTGCAGCTGGTGCTTCTTCTGTGTCTGCAGCACCTGCAGCACCAGCTAACCAGGTACAGTGGATTTCCATTTATTCGATGAACATAATTTCAATTTTACCGGATTAATACTGTAATTATTTTTTGATAAATCATGAGTCTTGACATGAAATTGCTACCCACCTCTTGTAGAAGGGCATTAATACTGTATTTGTAATGCTTCCTTTCTTTTGATTTGGTATCTCACCCCCGTGTTGCATAAAAACGTGCATAGGAGCTAAATATTTTCATTTTCCTCCATATCGAGGTTTATTTTCTTGAGTGTTGCTGGTATAATGCCGTCTAAGTGATCTTGCTTTGATGTATATTAATGTCGTGGCAATTGTCAGAGCTCTCCACCTGTACAGATTAAACTGGAATTGCATGTTGAACGTTGTCAATCTTTAGTAAAGATGACAACTTGGCATGTAAAGGAATTTTCTGGGAAGCTTTACAAGTTTATATATTTATAGTGATTTCTTGGCATTCTTGGGTGTATGAAGGGTACATATAGTAATGTATTTTGTGAATAAGAATTTGTGTGCCTCTTATCCTAGCTTCCTTCCTAATTTGATGTTGTATAGGTGCGTCCCACTTACCTGTAGCTTGTGTGTTATCAGAATTTTTTATTCTTCATTTTTGCAGTTTCTCCAAAGAAATAACAATTACCTTCATTTTTTTTAGGCTCAGCCTCAGAGTTCGACAACGCCTGCAGCTGTTGCGCCAGCATCTGTTGCACCTCAAGCTCAGTAAGTTCTTGTAGTCATTGCCTTCTTTTCAGGTTTAGAAACCAATTGTTAGATTGAAAGTTGCTAGGATGGTATGATGCATGCTTTTGCGACATTTCTTAAAAATGCCTTTTTTTTGTTTTGCAAGGACGCAAACTGCTACAGAACCTGTTGTTGCTGCACCTGCTGCACCTGCGGCTTCGTAAGTTTTAACTCGTTTGATTACATTGTATCTGTAGTTGTGTTTTCCGTCAAATTATTGAAGTCCTGGAAATGGATTATGACTTCTTACTTAATTGCTATAAGCAGAGGTGACGAAAATGTGTATGGCCAAGCTGCGTCTAATTTGGTCGCAGGAAGCAGTTTAGAGACAACCATTCAGCAGATTCTAGATATGGGTGGAGGGAGTTGGGACAGGGATACAGTTGTTCGTGCTCTACGTGCTGCATACAACAACCCTGAGAGGGCTGTTGAATATTTGTACAATGTATGTCTATGTTCTACTGATGCTTTTTTCATGCTCCTCCGGTCCTCCCCCAACCCCAACCCCAACCTCCATCCCTCCCCCTCTTAATATACAAGCCCTGTCTACATTGTGCTTGGGATTATTTTTAGTTCCTGCCAATGTGTCTTGTACTGCGTGTTTTTTATGCGTTAATAAACGGTGGTAGACTGGTAGTGAGAATGAATTTGTATCATAGATTTTTTTGGAGAAGTCATATAACAGTGCCCATGGGTTAATGCTTATTCACCTCATACATCTCATTTTCTTCATAAATCTTTATACCAATGGGTAGGTGGTATTGAGTGGGAATGAAAATATATGATGAAAGACACTATATAGAGATGACACTGCATTAAGTTAATGGTTGTTTTTGCAAAATCATCTTGTTGCTTCATTTGACTTAAGTAGTGCCTAATTTCACTTAAATTGTTACTGTCCGATACTTCTTGAGAAATAACCTTCTAGTTTGACATTATGCTGTTAGCTGGTCTTTGTTACGAGATATTCTTCATCTACCGGAAGTTGTTTTTCTTAATGATGCAGAGCTGCTGCTATTACTTTTTTGTGTGATTTTATTGAACCAGAACCTTGGAAGCTTTTATGTTCCATTGATGATAAGCTTGGCTGTGATGTTGTATTAAAAATTTCAGGGAATTCCGGAGCAAGCTGAAGTTCCTCCTGTCGCGCGAACACCTGCTGCTGGTCCTACTGACTTGCAGGTTGACGATCCCCTTGTTCAGGCTCTGAATCCTCTTGCTGAGGCTGGGAATCCTCTTGCTCAGGCTCCTCAAGCAGCTGTACCAGCAACTGGTCCTAATGCAAGTCCATTAGATCTCTTTCCACAGGTAGCTGTCTGTTTTTGAGCATCTGCATACCTTGTTAGATGATACCAACACTTCTTGTCGTTCGAAGTACTTTCCTATCATTGGTAACCCTTATTGTTTTGCACCCAGGGCCTTCCTAACGTGGGTTCAACTGCTGGTGGTGCTAGCTCGTTGGATTTCCTCCGCAATAGTCAGCAGGTATGCGGAAATATTTGGGCATATTAATTCAGTCAGCCCGTTTATTCTGAATCATTATGTTATCTTTTTTTTCTTTTTTTTTAGTTTCAAGCATTGCGAGCTATGGTGCAAGCCAATCCCCAGATATTGCAGGTATGCTCATTTTTTCAGTTATGTATTTTCTCGTGGTATGCAATTTTTCTGAAGGTCTTATACGTCCTTTGATTGTGTTCAGCCTATGCTTCAAGAACTTGGGAAGCAGAATCCGCAACTAATGCGGCTCATTCAAGAACACCAGGCTGATTTTCTTCGCCTGATTAATGAACCTGTTGAAGGGGAAGGGTATTGTTGCATCACGTGTTGATTTTTTTTTTCATCATTTGTTAAACATATAGGTTAAGTGAATATCATTCTGATGACTTCATTTTGTCATGTTTGGAGTAGGAACCTACTCTCGCAGTTCGCCTCTGCAGTACCACCAACTGTATCTGTGACAACAGAGGAGCGTGAAGCCATAGGACGTGTATGTATTTCTTAATTTGATAAAATAAAAGTGGTCTATGCTTCATTAGGTGTAAAGGAAAATTGATTTTAGAAAATGCCAACCTTCTAGTTTTGTGAGTAGAATACTACTCGTATGGAAGAGATGGCTTGACAAGTTAAGAGGAATTTCAGCAACATAAGAAGGTGATAGTGTTTGGAAACGGCTCAATGTGGAAAGGTTATTCAATAATTTTGGTGCTCCCGTGAATTAAGCATTAAAAAAGTACAATTTTTTTAATCCCACTTATTAAATGTTGATCCAGTGAAGTGGCACTTACATTTTTCAATCGTATTATCCTTTACTTCCCTCTACTGCTTTGTGTAATACTCCTCGCAGCAGGATGTTTTCCCCTCAGGCAGTCCCCCGTTCCTCCTATTCCACACCGGCCAGCTTCTTCTCCCTTTCTCTCTCTCTTTTCCACCCTCTCACTCTTTTGGTTGCTGGAGAATGTGATGTACTGTTTGACTTGTGATATGTGATGAAAAAGTGAATATTATTTTTTTGTAGGTTTTAATGATTTGAGTTGGCATGAAATACAATTGGTGTTAATTAATACTGTGTGACCGAGTCCTACTGATATTTGTTATATTTGGGTGGTGGCAGCTTGAAGGTATGGGCTTCAGACGGGCAACAGTCCTGCAAGTGTACTTCGCATGCAACAAGAACGAGGAGCTAGCTGCAAACTATCTTTTAGATCATATGGACGAGTTTGATAACGAGGAAGATGAAGGCCTTTCCTAAGGCTAATTGGGTTGATATCATCGCTCGGCACACTCCGTTTTTACTGCGTCCCAATAGAAGATTTTCGTTTATAATTGTCAGGCGCGTGAGACGGTTATTTGGATTAGTTTCAAACCTGGGATATATATATCGAATGGGCTAGATGTTAATTTGTTCAGTTTTATGTACAACTTAACCTTTTCATTTTCATTATCTCATAAAATATAGCTTAAGCATATCCAAGTGTTTAATCCCTTTGCGTGCTCACCTACCTTTCTCCAAGGTGTAGCCCGTGAATCATTCTTGGCTTCACCTTGTCAACCGTGGTTGGCATTTTCTATGGAATATCCTGAGTGCACAAGCTTGATAAGAACAAATGTGATGATGTTTTAGTGGGTTTTCTGGAACAAGTATGGAATACGATTCTCTGAAGCCCATTATATGAACAGATTCACTTTCCTGATAATAAGGAACCTTACTTTTGCTTACTTTAGCGATAAAGAAGAATTCTGCCTAAATTCTAATCATTCGATTCTTAAACAGCAAGTTCTACTCATATGAGAATTCCAATATAGTGTTTAATCAAGCAGCATTTTCAGGACTTAGTTCAATTCAACTAAAGCAGAGATCAAGCGCAAAGGACAAAGTCTTTCAAGTCATTTCATAAATTAGAGACCAGAGATCGAGTCTTATACTTCGCAAACAGAAGTTTACTGATTCTGCTATAGTTCGATTATTTTAAAGCTTATTCAAAATAAGTTTCTTATTCAAAATATGACATATTTCTTTCAAAAGACCAGTTAATAATAGTTGAATCGTTCTC

mRNA sequence

ACCCTAAATACGGAGTATTAGGGTTTATCTTTAAATAAATGAAGAATCCTGCTAGACAAGGCAAGTATCACCTAATCGCTATCCGGAGCGCAATTGACTTCACCGCCTACATAAATAATCAATTTAATAAATAACTCAAGAGAGAGAAATAAAAAAGGCGTTTCTATAACTCTTCCCCTCTTTTCTCAATCTCTCTCCTCCGGCGAGCGACGACGACGATAACGGAAGGATTTACTCGTCGAAAATGAAAATCTTCGTCAAAACTCTTAAGGGCACTAACTTCGAGATCGAAGCTGATTCCGATGATTCTGTTGTGGATGTGAAGAAAAGTATTGAAAAATCGCAAGGTGCAGATGTCTATCCTGCTAGCCTACAAATGCTCATCTTTCAGGGGAAGGTTCTCAAAGATGCAACAACATTGGGAGAAAATGGTGTGGTTGATTGCAGTTTCCTGGTTGTTATGATAAGTAAGAACAAGCCAGCTGCAGCTGGTGCTTCTTCTGTGTCTGCAGCACCTGCAGCACCAGCTAACCAGGCTCAGCCTCAGAGTTCGACAACGCCTGCAGCTGTTGCGCCAGCATCTGTTGCACCTCAAGCTCAGACGCAAACTGCTACAGAACCTGTTGTTGCTGCACCTGCTGCACCTGCGGCTTCAGGTGACGAAAATGTGTATGGCCAAGCTGCGTCTAATTTGGTCGCAGGAAGCAGTTTAGAGACAACCATTCAGCAGATTCTAGATATGGGTGGAGGGAGTTGGGACAGGGATACAGTTGTTCGTGCTCTACGTGCTGCATACAACAACCCTGAGAGGGCTGTTGAATATTTGTACAATGGAATTCCGGAGCAAGCTGAAGTTCCTCCTGTCGCGCGAACACCTGCTGCTGGTCCTACTGACTTGCAGGTTGACGATCCCCTTGTTCAGGCTCTGAATCCTCTTGCTGAGGCTGGGAATCCTCTTGCTCAGGCTCCTCAAGCAGCTGTACCAGCAACTGGTCCTAATGCAAGTCCATTAGATCTCTTTCCACAGGGCCTTCCTAACGTGGGTTCAACTGCTGGTGGTGCTAGCTCGTTGGATTTCCTCCGCAATAGTCAGCAGTTTCAAGCATTGCGAGCTATGGTGCAAGCCAATCCCCAGATATTGCAGCCTATGCTTCAAGAACTTGGGAAGCAGAATCCGCAACTAATGCGGCTCATTCAAGAACACCAGGCTGATTTTCTTCGCCTGATTAATGAACCTGTTGAAGGGGAAGGGAACCTACTCTCGCAGTTCGCCTCTGCAGTACCACCAACTGTATCTGTGACAACAGAGGAGCGTGAAGCCATAGGACGTCTTGAAGGTATGGGCTTCAGACGGGCAACAGTCCTGCAAGTGTACTTCGCATGCAACAAGAACGAGGAGCTAGCTGCAAACTATCTTTTAGATCATATGGACGAGTTTGATAACGAGGAAGATGAAGGCCTTTCCTAAGGCTAATTGGGTTGATATCATCGCTCGGCACACTCCGTTTTTACTGCGTCCCAATAGAAGATTTTCGTTTATAATTGTCAGGCGCGTGAGACGGTTATTTGGATTAGTTTCAAACCTGGGATATATATATCGAATGGGCTAGATGTTAATTTGTTCAGTTTTATGTACAACTTAACCTTTTCATTTTCATTATCTCATAAAATATAGCTTAAGCATATCCAAGTGTTTAATCCCTTTGCGTGCTCACCTACCTTTCTCCAAGGTGTAGCCCGTGAATCATTCTTGGCTTCACCTTGTCAACCGTGGTTGGCATTTTCTATGGAATATCCTGAGTGCACAAGCTTGATAAGAACAAATGTGATGATGTTTTAGTGGGTTTTCTGGAACAAGTATGGAATACGATTCTCTGAAGCCCATTATATGAACAGATTCACTTTCCTGATAATAAGGAACCTTACTTTTGCTTACTTTAGCGATAAAGAAGAATTCTGCCTAAATTCTAATCATTCGATTCTTAAACAGCAAGTTCTACTCATATGAGAATTCCAATATAGTGTTTAATCAAGCAGCATTTTCAGGACTTAGTTCAATTCAACTAAAGCAGAGATCAAGCGCAAAGGACAAAGTCTTTCAAGTCATTTCATAAATTAGAGACCAGAGATCGAGTCTTATACTTCGCAAACAGAAGTTTACTGATTCTGCTATAGTTCGATTATTTTAAAGCTTATTCAAAATAAGTTTCTTATTCAAAATATGACATATTTCTTTCAAAAGACCAGTTAATAATAGTTGAATCGTTCTC

Coding sequence (CDS)

ATGAAAATCTTCGTCAAAACTCTTAAGGGCACTAACTTCGAGATCGAAGCTGATTCCGATGATTCTGTTGTGGATGTGAAGAAAAGTATTGAAAAATCGCAAGGTGCAGATGTCTATCCTGCTAGCCTACAAATGCTCATCTTTCAGGGGAAGGTTCTCAAAGATGCAACAACATTGGGAGAAAATGGTGTGGTTGATTGCAGTTTCCTGGTTGTTATGATAAGTAAGAACAAGCCAGCTGCAGCTGGTGCTTCTTCTGTGTCTGCAGCACCTGCAGCACCAGCTAACCAGGCTCAGCCTCAGAGTTCGACAACGCCTGCAGCTGTTGCGCCAGCATCTGTTGCACCTCAAGCTCAGACGCAAACTGCTACAGAACCTGTTGTTGCTGCACCTGCTGCACCTGCGGCTTCAGGTGACGAAAATGTGTATGGCCAAGCTGCGTCTAATTTGGTCGCAGGAAGCAGTTTAGAGACAACCATTCAGCAGATTCTAGATATGGGTGGAGGGAGTTGGGACAGGGATACAGTTGTTCGTGCTCTACGTGCTGCATACAACAACCCTGAGAGGGCTGTTGAATATTTGTACAATGGAATTCCGGAGCAAGCTGAAGTTCCTCCTGTCGCGCGAACACCTGCTGCTGGTCCTACTGACTTGCAGGTTGACGATCCCCTTGTTCAGGCTCTGAATCCTCTTGCTGAGGCTGGGAATCCTCTTGCTCAGGCTCCTCAAGCAGCTGTACCAGCAACTGGTCCTAATGCAAGTCCATTAGATCTCTTTCCACAGGGCCTTCCTAACGTGGGTTCAACTGCTGGTGGTGCTAGCTCGTTGGATTTCCTCCGCAATAGTCAGCAGTTTCAAGCATTGCGAGCTATGGTGCAAGCCAATCCCCAGATATTGCAGCCTATGCTTCAAGAACTTGGGAAGCAGAATCCGCAACTAATGCGGCTCATTCAAGAACACCAGGCTGATTTTCTTCGCCTGATTAATGAACCTGTTGAAGGGGAAGGGAACCTACTCTCGCAGTTCGCCTCTGCAGTACCACCAACTGTATCTGTGACAACAGAGGAGCGTGAAGCCATAGGACGTCTTGAAGGTATGGGCTTCAGACGGGCAACAGTCCTGCAAGTGTACTTCGCATGCAACAAGAACGAGGAGCTAGCTGCAAACTATCTTTTAGATCATATGGACGAGTTTGATAACGAGGAAGATGAAGGCCTTTCCTAA

Protein sequence

MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLGENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPAAVAPASVAPQAQTQTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPLAQAPQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEEREAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNEEDEGLS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24108.1	Spo24108.1	mRNA

Homology

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BLAST of Spo24108.1 vs. NCBI nr
Match: gi|902224482|gb|KNA19800.1| (hypothetical protein SOVF_058260 [Spinacia oleracea])

HSP 1 Score: 760.8 bits (1963), Expect = 1.300e-216
Identity = 407/407 (100.00%), Postives = 407/407 (100.00%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG
Sbjct: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPAAVAPASVAPQAQT 120
           ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPAAVAPASVAPQAQT
Sbjct: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPAAVAPASVAPQAQT 120

Query: 121 QTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVRAL 180
           QTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVRAL
Sbjct: 121 QTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVRAL 180

Query: 181 RAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPLAQ 240
           RAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPLAQ
Sbjct: 181 RAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPLAQ 240

Query: 241 APQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANPQILQ 300
           APQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANPQILQ
Sbjct: 241 APQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANPQILQ 300

Query: 301 PMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEEREAI 360
           PMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEEREAI
Sbjct: 301 PMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEEREAI 360

Query: 361 GRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNEEDEGLS 408
           GRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNEEDEGLS
Sbjct: 361 GRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNEEDEGLS 407

[Close]

BLAST of Spo24108.1 vs. NCBI nr
Match: gi|731315784|ref|XP_010692904.1| (PREDICTED: ubiquitin receptor RAD23d [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 623.2 bits (1606), Expect = 3.100e-175
Identity = 345/413 (83.54%), Postives = 367/413 (88.86%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTLKGTNFEI+A+ DD+V DVKKSIEK QGA+ YPA+LQMLI QGKVLKD TTLG
Sbjct: 1   MKIFVKTLKGTNFEIDANIDDTVADVKKSIEKIQGAETYPANLQMLIHQGKVLKDTTTLG 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSST--TPAAVAPASVAPQA 120
           EN V + SFLV+M+SKNKPAAAG+SSV   PAAP++QAQPQS+T  TPAA  PAS APQA
Sbjct: 61  ENNVAENSFLVIMLSKNKPAAAGSSSV---PAAPSSQAQPQSTTIPTPAAALPASAAPQA 120

Query: 121 QTQTATEPVVAAPA---APAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDT 180
           Q QTA EP  AAPA   APAASG+E+VYG AASNLVAGS LETT+QQILDMGGGSWDRDT
Sbjct: 121 QMQTAAEPTAAAPAVPAAPAASGEEDVYGLAASNLVAGSHLETTVQQILDMGGGSWDRDT 180

Query: 181 VVRALRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGP-TDLQVDDPLVQALNPLAEA 240
           VVRALRAAYNNPERAVEYLY+GIPEQAEVPPVARTPAA   T  Q  +PL QA NPLA A
Sbjct: 181 VVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARTPAAATATGAQAGNPLAQAGNPLAPA 240

Query: 241 GNPLAQAPQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQA 300
           GNPLAQAPQA VPA GPNASPLDLFPQGLPNVGS AG A SLDFLRNSQQFQALRAMVQA
Sbjct: 241 GNPLAQAPQATVPAAGPNASPLDLFPQGLPNVGSNAG-AGSLDFLRNSQQFQALRAMVQA 300

Query: 301 NPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTT 360
           NPQILQPMLQELGKQNPQLMRLIQ+HQADFLRLINEPVEGEGNLLSQ  SA+P +VSVT 
Sbjct: 301 NPQILQPMLQELGKQNPQLMRLIQDHQADFLRLINEPVEGEGNLLSQLTSAMPASVSVTP 360

Query: 361 EEREAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNEEDEGLS 408
           EEREAI RLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEF+NE+DEGLS
Sbjct: 361 EEREAIERLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFENEDDEGLS 409

[Close]

BLAST of Spo24108.1 vs. NCBI nr
Match: gi|1009127201|ref|XP_015880567.1| (PREDICTED: ubiquitin receptor RAD23d [Ziziphus jujuba])

HSP 1 Score: 493.4 bits (1269), Expect = 3.700e-136
Identity = 282/403 (69.98%), Postives = 313/403 (77.67%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MK+FVKTLKGTNFEIE   +D VVDVKK+IE  QGADVYPAS QMLI+QGKVLKD TTL 
Sbjct: 1   MKVFVKTLKGTNFEIEVKPEDLVVDVKKNIETVQGADVYPASQQMLIYQGKVLKDTTTLE 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPAAVAP----ASVAP 120
           EN V + SF+V+M+SK K + +GAS  S A  + A  A   +ST P+  +     A V P
Sbjct: 61  ENKVAENSFIVIMLSKTKVSPSGASGTSGAATSQAQPASTPTSTAPSTTSQVPPSAVVLP 120

Query: 121 QAQTQTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTV 180
           Q   QTA  P  A   AP AS   +VYGQAASNLVAG++LE+TIQQILDMGGGSWDRDTV
Sbjct: 121 QPAPQTA--PTAAPTTAPTASPGSDVYGQAASNLVAGNNLESTIQQILDMGGGSWDRDTV 180

Query: 181 VRALRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGN 240
           VRALRAA+NNPERAVEYLY+GIPEQAE+PPVAR P +G           QA NP     N
Sbjct: 181 VRALRAAFNNPERAVEYLYSGIPEQAEIPPVARVPTSG-----------QATNP--PPLN 240

Query: 241 PLAQAPQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANP 300
              QAPQ A PA GPN++PLDLFPQGLPN+G+ AG A +LDFLRNSQQFQALRAMVQANP
Sbjct: 241 SPVQAPQPAAPAGGPNSNPLDLFPQGLPNMGANAG-AGTLDFLRNSQQFQALRAMVQANP 300

Query: 301 QILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEE 360
           QILQPMLQELGKQNP LMRLIQEHQADFLRLINEP EGEGNLL Q ASA+P  VSVT EE
Sbjct: 301 QILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPAEGEGNLLGQLASAMPQAVSVTPEE 360

Query: 361 REAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFD 400
           REAI RLE MGF RA VL+V+FACNKNEELAANYLLDHM EF+
Sbjct: 361 REAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 387

[Close]

BLAST of Spo24108.1 vs. NCBI nr
Match: gi|565394960|ref|XP_006363121.1| (PREDICTED: ubiquitin receptor RAD23d [Solanum tuberosum])

HSP 1 Score: 491.9 bits (1265), Expect = 1.100e-135
Identity = 281/402 (69.90%), Postives = 314/402 (78.11%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTLKGT+FEIE   +DSV DVKK+IE  QG DVYPA+ QMLI QGKVLKDATTL 
Sbjct: 1   MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDATTLE 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPA---AVAPASVAPQ 120
           EN V + SF+V+M+SKNK ++ G SS+   PAAP+N AQP  ST  A     AP + A  
Sbjct: 61  ENKVAENSFVVIMLSKNKVSSTGTSSI---PAAPSNTAQPAGSTDQARQTITAPQATAAL 120

Query: 121 AQTQTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVV 180
            Q+ + + P  A   A AAS   +VY QAASNLVAGS+LETT+QQILDMGGGSWDRDTVV
Sbjct: 121 PQSASESAPASAPVPAAAASSVTDVYDQAASNLVAGSNLETTVQQILDMGGGSWDRDTVV 180

Query: 181 RALRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNP 240
           RALRAA+NNPERAV+YLY+GIPEQAE+PPVARTPAA            QA+NP A+    
Sbjct: 181 RALRAAFNNPERAVDYLYSGIPEQAEIPPVARTPAAPAVTAPASG---QAINPAAQ---- 240

Query: 241 LAQAPQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANPQ 300
              A Q AVP++GPNA+PLDLFPQGL N GS A GA +LDFLRNS QFQALRAMVQANPQ
Sbjct: 241 --DASQLAVPSSGPNANPLDLFPQGLTNAGSNA-GAGNLDFLRNSPQFQALRAMVQANPQ 300

Query: 301 ILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEER 360
           ILQPMLQELGKQNP LMRLIQEHQ DFLRLINEPVEGEGN+L Q A A+P  V+VT EER
Sbjct: 301 ILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVEGEGNVLGQTAGAIPQAVTVTPEER 360

Query: 361 EAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFD 400
           EAI RLE MGF RA VL+VYFACNKNEELAANYLLDHM EFD
Sbjct: 361 EAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFD 389

[Close]

BLAST of Spo24108.1 vs. NCBI nr
Match: gi|970011177|ref|XP_015066493.1| (PREDICTED: ubiquitin receptor RAD23d isoform X2 [Solanum pennellii])

HSP 1 Score: 483.4 bits (1243), Expect = 3.900e-133
Identity = 280/402 (69.65%), Postives = 313/402 (77.86%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTLKGT+FEIE   +D+V DVKKSIE +QG DVYPA+ QMLI QGKVLKD TTL 
Sbjct: 1   MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETAQGQDVYPAAQQMLIHQGKVLKDPTTLE 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPA-APANQAQPQSSTTPAAVAPASVAPQAQ 120
           EN V + SF+V+M+SKNK +A+G S+   AP+ +PA   QP  +  P A A ASVAP   
Sbjct: 61  ENKVAENSFVVIMLSKNKVSASGTSATQPAPSNSPATTGQPTQTVAPQATA-ASVAPAQS 120

Query: 121 TQTATEPVVAAPA-APAASGD-ENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVV 180
               T    AAPA APAA+    +VYGQAASNLVAGS+LETT+QQILDMGGGSW+RDTVV
Sbjct: 121 APAPTPAPAAAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQILDMGGGSWERDTVV 180

Query: 181 RALRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNP 240
           RALRAAYNNPERA+EYLY+GIPEQAE+PP A  PA+G                  +A NP
Sbjct: 181 RALRAAYNNPERAIEYLYSGIPEQAEIPPAA--PASG------------------QAVNP 240

Query: 241 LAQAPQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANPQ 300
             QA Q AVP++GPNA+PLDLFPQGLPNVGS A  A +LDFL NS QFQALRAMVQANPQ
Sbjct: 241 PVQASQPAVPSSGPNANPLDLFPQGLPNVGSNAA-AGNLDFLSNSPQFQALRAMVQANPQ 300

Query: 301 ILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEER 360
           ILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGN+  Q A A+P  V+VT EER
Sbjct: 301 ILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNVPGQPAGAIPQAVTVTPEER 360

Query: 361 EAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFD 400
           EAI RLE MGF RA VLQVYFACNKNEE+AANYLLDHM EFD
Sbjct: 361 EAIERLEAMGFDRALVLQVYFACNKNEEMAANYLLDHMHEFD 380

[Close]

BLAST of Spo24108.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJX7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_058260 PE=4 SV=1)

HSP 1 Score: 760.8 bits (1963), Expect = 8.700e-217
Identity = 407/407 (100.00%), Postives = 407/407 (100.00%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG
Sbjct: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPAAVAPASVAPQAQT 120
           ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPAAVAPASVAPQAQT
Sbjct: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPAAVAPASVAPQAQT 120

Query: 121 QTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVRAL 180
           QTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVRAL
Sbjct: 121 QTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVRAL 180

Query: 181 RAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPLAQ 240
           RAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPLAQ
Sbjct: 181 RAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPLAQ 240

Query: 241 APQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANPQILQ 300
           APQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANPQILQ
Sbjct: 241 APQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANPQILQ 300

Query: 301 PMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEEREAI 360
           PMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEEREAI
Sbjct: 301 PMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEEREAI 360

Query: 361 GRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNEEDEGLS 408
           GRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNEEDEGLS
Sbjct: 361 GRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNEEDEGLS 407

[Close]

BLAST of Spo24108.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CXU4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026730 PE=4 SV=1)

HSP 1 Score: 623.2 bits (1606), Expect = 2.200e-175
Identity = 345/413 (83.54%), Postives = 367/413 (88.86%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTLKGTNFEI+A+ DD+V DVKKSIEK QGA+ YPA+LQMLI QGKVLKD TTLG
Sbjct: 1   MKIFVKTLKGTNFEIDANIDDTVADVKKSIEKIQGAETYPANLQMLIHQGKVLKDTTTLG 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSST--TPAAVAPASVAPQA 120
           EN V + SFLV+M+SKNKPAAAG+SSV   PAAP++QAQPQS+T  TPAA  PAS APQA
Sbjct: 61  ENNVAENSFLVIMLSKNKPAAAGSSSV---PAAPSSQAQPQSTTIPTPAAALPASAAPQA 120

Query: 121 QTQTATEPVVAAPA---APAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDT 180
           Q QTA EP  AAPA   APAASG+E+VYG AASNLVAGS LETT+QQILDMGGGSWDRDT
Sbjct: 121 QMQTAAEPTAAAPAVPAAPAASGEEDVYGLAASNLVAGSHLETTVQQILDMGGGSWDRDT 180

Query: 181 VVRALRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGP-TDLQVDDPLVQALNPLAEA 240
           VVRALRAAYNNPERAVEYLY+GIPEQAEVPPVARTPAA   T  Q  +PL QA NPLA A
Sbjct: 181 VVRALRAAYNNPERAVEYLYSGIPEQAEVPPVARTPAAATATGAQAGNPLAQAGNPLAPA 240

Query: 241 GNPLAQAPQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQA 300
           GNPLAQAPQA VPA GPNASPLDLFPQGLPNVGS AG A SLDFLRNSQQFQALRAMVQA
Sbjct: 241 GNPLAQAPQATVPAAGPNASPLDLFPQGLPNVGSNAG-AGSLDFLRNSQQFQALRAMVQA 300

Query: 301 NPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTT 360
           NPQILQPMLQELGKQNPQLMRLIQ+HQADFLRLINEPVEGEGNLLSQ  SA+P +VSVT 
Sbjct: 301 NPQILQPMLQELGKQNPQLMRLIQDHQADFLRLINEPVEGEGNLLSQLTSAMPASVSVTP 360

Query: 361 EEREAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNEEDEGLS 408
           EEREAI RLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEF+NE+DEGLS
Sbjct: 361 EEREAIERLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFENEDDEGLS 409

[Close]

BLAST of Spo24108.1 vs. UniProtKB/TrEMBL
Match: M1AYC6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012654 PE=4 SV=1)

HSP 1 Score: 491.9 bits (1265), Expect = 7.600e-136
Identity = 281/402 (69.90%), Postives = 314/402 (78.11%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTLKGT+FEIE   +DSV DVKK+IE  QG DVYPA+ QMLI QGKVLKDATTL 
Sbjct: 1   MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDATTLE 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPA---AVAPASVAPQ 120
           EN V + SF+V+M+SKNK ++ G SS+   PAAP+N AQP  ST  A     AP + A  
Sbjct: 61  ENKVAENSFVVIMLSKNKVSSTGTSSI---PAAPSNTAQPAGSTDQARQTITAPQATAAL 120

Query: 121 AQTQTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVV 180
            Q+ + + P  A   A AAS   +VY QAASNLVAGS+LETT+QQILDMGGGSWDRDTVV
Sbjct: 121 PQSASESAPASAPVPAAAASSVTDVYDQAASNLVAGSNLETTVQQILDMGGGSWDRDTVV 180

Query: 181 RALRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNP 240
           RALRAA+NNPERAV+YLY+GIPEQAE+PPVARTPAA            QA+NP A+    
Sbjct: 181 RALRAAFNNPERAVDYLYSGIPEQAEIPPVARTPAAPAVTAPASG---QAINPAAQ---- 240

Query: 241 LAQAPQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANPQ 300
              A Q AVP++GPNA+PLDLFPQGL N GS A GA +LDFLRNS QFQALRAMVQANPQ
Sbjct: 241 --DASQLAVPSSGPNANPLDLFPQGLTNAGSNA-GAGNLDFLRNSPQFQALRAMVQANPQ 300

Query: 301 ILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEER 360
           ILQPMLQELGKQNP LMRLIQEHQ DFLRLINEPVEGEGN+L Q A A+P  V+VT EER
Sbjct: 301 ILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVEGEGNVLGQTAGAIPQAVTVTPEER 360

Query: 361 EAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFD 400
           EAI RLE MGF RA VL+VYFACNKNEELAANYLLDHM EFD
Sbjct: 361 EAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFD 389

[Close]

BLAST of Spo24108.1 vs. UniProtKB/TrEMBL
Match: Q9STA6_SOLLC (RAD23 protein OS=Solanum lycopersicum GN=rad23 PE=2 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 3.500e-133
Identity = 279/407 (68.55%), Postives = 313/407 (76.90%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTLKGT+FEIE   +DSV DVKK+IE  QG DVYPA+ QMLI QGKVLKD TTL 
Sbjct: 1   MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLE 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQP--------QSSTTPAAVAPA 120
           EN V + SF+V+M+SKNK ++ G SS+S   AA +N AQP        Q+ TTP A A  
Sbjct: 61  ENKVAENSFVVIMLSKNKVSSTGTSSIS---AALSNTAQPDGSTDQARQTITTPQATA-- 120

Query: 121 SVAPQAQTQTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWD 180
              PQ+ +++A  P   AP   AAS   +VY QAASNLVAGS+LETT+QQILDMGGGSWD
Sbjct: 121 -ALPQSASESAPTP---APVPAAASSVTDVYDQAASNLVAGSNLETTVQQILDMGGGSWD 180

Query: 181 RDTVVRALRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLA 240
           RDTVVRALRAAYNNPERAV+YLY+GIPEQ E+PPVAR PAA            QA+NP A
Sbjct: 181 RDTVVRALRAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPAS---AQAINPAA 240

Query: 241 EAGNPLAQAPQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMV 300
           +       A Q AVP++GPNA+PLDLFPQGL N GS A GA +LDFLRNS QFQALRAMV
Sbjct: 241 Q------DASQLAVPSSGPNANPLDLFPQGLTNAGSNA-GAGNLDFLRNSPQFQALRAMV 300

Query: 301 QANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSV 360
           QANPQILQPMLQELGKQNP LMRLIQEHQ DFLRLINEPVEGEGN+L Q A A+P  V+V
Sbjct: 301 QANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVEGEGNVLGQTAGAIPQAVTV 360

Query: 361 TTEEREAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFD 400
           T EEREAI RLE MGF RA VL+VYFACNKNEELAANYLLDH+ EFD
Sbjct: 361 TPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHLHEFD 388

[Close]

BLAST of Spo24108.1 vs. UniProtKB/TrEMBL
Match: M5WSP8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007020mg PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 4.600e-133
Identity = 277/402 (68.91%), Postives = 308/402 (76.62%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MK+FVKTLKGTNFEIE   ++ V DVKK IE  QGADVYPAS QMLI QGKVLKD TTL 
Sbjct: 1   MKVFVKTLKGTNFEIEVKPEEMVADVKKIIETVQGADVYPASQQMLIHQGKVLKDTTTLE 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPAAVAPASVAPQAQT 120
           EN V + SF+V+M++KNK + +GASS   A  + A  A   +ST P   +PA V   A++
Sbjct: 61  ENQVAENSFIVIMLTKNKASPSGASSTKGAATSQAQPASTPTSTAPPVASPAPVRAVAES 120

Query: 121 QTATEPVVAAPA--APAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVR 180
           Q    PVV  PA  AP  S   +VYGQAASNLVAG++LE T+QQILDMGGGSWDRDTVVR
Sbjct: 121 Q----PVVETPAVAAPTDSSRSDVYGQAASNLVAGTNLEATVQQILDMGGGSWDRDTVVR 180

Query: 181 ALRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPL 240
           ALRAA+NNPERAVEYLY+GIPEQAEVPP A+ PA             QA NP   A NP 
Sbjct: 181 ALRAAFNNPERAVEYLYSGIPEQAEVPPAAQVPAGE-----------QAANP--PAANPP 240

Query: 241 AQAPQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANPQI 300
           AQAPQ   P  GPNA+PLDLFPQGLPN+G+ A GA +LDFLRNS QFQALRAMVQANPQI
Sbjct: 241 AQAPQPVAPTGGPNANPLDLFPQGLPNMGANA-GAGNLDFLRNSPQFQALRAMVQANPQI 300

Query: 301 LQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVE-GEGNLLSQFASAVPPTVSVTTEER 360
           LQPMLQELGKQNP LM+LIQ HQADFLRLINEPVE GEGNLL Q  +AVP  V+VT EER
Sbjct: 301 LQPMLQELGKQNPHLMQLIQAHQADFLRLINEPVEGGEGNLLEQLGAAVPQAVTVTPEER 360

Query: 361 EAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFD 400
           EAI RLE MGF RA VL+VYFACNKNEELAANYLLDHM EF+
Sbjct: 361 EAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFE 384

[Close]

BLAST of Spo24108.1 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Ubiquitin receptor RAD23d OS=Arabidopsis thaliana GN=RAD23D PE=1 SV=2)

HSP 1 Score: 458.0 bits (1177), Expect = 1.100e-127
Identity = 268/405 (66.17%), Postives = 310/405 (76.54%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTL G+NFEIE    D V DVK +IE  +GA+ YPA+ QMLI QGKVLKD TTL 
Sbjct: 1   MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSA-APAAPANQAQPQSSTTPAAVAPASVAPQAQ 120
           EN VV+ SF+V+M+SK K + +GAS+ SA AP+A     QPQ+  TP   AP +  P   
Sbjct: 61  ENNVVENSFIVIMLSKTKASPSGASTASAPAPSA----TQPQTVATPQVSAPTASVPVPT 120

Query: 121 TQTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVRA 180
           + TAT    AA  A AAS   +VYGQAASNLVAG++LE+T+QQILDMGGGSWDRDTVVRA
Sbjct: 121 SGTAT----AAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRA 180

Query: 181 LRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPLA 240
           LRAA+NNPERAVEYLY+GIP QAE+PPVA+ PA G                  +A NPLA
Sbjct: 181 LRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGE-----------------QAANPLA 240

Query: 241 QAPQAAVPAT---GPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANP 300
           Q  QAA PA    GPNA+PL+LFPQG+P   + AG A +LDFLRNSQQFQALRAMVQANP
Sbjct: 241 QPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAG-AGNLDFLRNSQQFQALRAMVQANP 300

Query: 301 QILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEE 360
           QILQPMLQELGKQNPQL+RLIQEHQADFLRLINEPVEGE N++ Q  +A+P  V+VT EE
Sbjct: 301 QILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEENVMEQLEAAMPQAVTVTPEE 360

Query: 361 REAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNE 402
           REAI RLEGMGF RA VL+V+FACNKNEELAANYLLDHM EF+++
Sbjct: 361 REAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFEDQ 378

[Close]

BLAST of Spo24108.1 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Ubiquitin receptor RAD23c OS=Arabidopsis thaliana GN=RAD23C PE=1 SV=2)

HSP 1 Score: 455.7 bits (1171), Expect = 5.400e-127
Identity = 276/436 (63.30%), Postives = 314/436 (72.02%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTLKGT+FEIE   +DSVVDVKK+IE  QGADVYPA+ QMLI QGKVLKD TT+ 
Sbjct: 1   MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSA----APAAPANQAQPQ-SSTTPAAV----AP 120
           EN V + SF+V+M++K+KPA+A ASS SA    A + P + +QP  S  TPA+V    AP
Sbjct: 61  ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAP 120

Query: 121 ASV-----------APQAQTQTATEPV-----------VAAPAAPAASGDENVYGQAASN 180
           A             AP A T+T T P+             AP +       +VYGQAASN
Sbjct: 121 APTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASN 180

Query: 181 LVAGSSLETTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYNGIPEQAEVPPVAR 240
           L AGS+LE+TIQQILDMGGG+WDR+TVV ALRAA+NNPERAVEYLY GIPEQAEVPPVAR
Sbjct: 181 LAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVAR 240

Query: 241 TPAAGPTDLQVDDPLVQALNPLAEAGNPLAQAPQ-AAVPATGPNASPLDLFPQGLPNVGS 300
            PA+                   +  NP AQ  Q AA PA+GPNA+PLDLFPQGLPNVG 
Sbjct: 241 PPASA-----------------GQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGG 300

Query: 301 TAGGASSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLI 360
              GA +LDFLRNSQQFQALRAMVQANPQ+LQPMLQELGKQNP LMRLIQ+HQADFLRLI
Sbjct: 301 NP-GAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLI 360

Query: 361 NEPVEG---EGNLLSQFASAV--PPTVSVTTEEREAIGRLEGMGFRRATVLQVYFACNKN 400
           NEPVEG    GNLL Q A+ +  P  + VT EEREAI RLE MGF RA VL+V+FACNKN
Sbjct: 361 NEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKN 418

[Close]

BLAST of Spo24108.1 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 396.4 bits (1017), Expect = 3.900e-109
Identity = 234/410 (57.07%), Postives = 287/410 (70.00%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKI VKTLKG+ F+IE DS   V DVK+ IE +QG  +YPA  QMLI QGKVLKD TTL 
Sbjct: 1   MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPA--APANQAQPQSSTTPAAVAPASVAPQA 120
           EN V++ SFLV+M+ + K +++ A + S AP+  AP  Q  P +  + A VAPA+  P  
Sbjct: 61  ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPV- 120

Query: 121 QTQTATEPVVAAPAAPAA--SGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTV 180
            T +A  P   A  APA   S + + YGQA SNLVAGS+LE TIQ IL+MGGG WDRD V
Sbjct: 121 -TVSAPTPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIV 180

Query: 181 VRALRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGN 240
           + AL AA+NNPERAVEYLY+G+PEQ ++P              V  P +Q  NP      
Sbjct: 181 LHALSAAFNNPERAVEYLYSGVPEQMDIP--------------VPPPSIQPANP-----T 240

Query: 241 PLAQAPQAAVPA---TGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQ 300
             +QA Q A P+   +GPNASPLDLFPQ LPN  + A G  +LD LRN+ QF+ L ++VQ
Sbjct: 241 QASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQ 300

Query: 301 ANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEG--EGNLLSQFASAVPPTVS 360
           ANPQILQP+LQELGKQNPQ+++LIQE+QA+FL LINEP EG  E NLL QF  A+P T++
Sbjct: 301 ANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIA 360

Query: 361 VTTEEREAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNE 402
           VT EE EAI RLE MGF RA VL V+FACNK+E+LAANYLLDHM+EFD+E
Sbjct: 361 VTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDDE 389

[Close]

BLAST of Spo24108.1 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Ubiquitin receptor RAD23b OS=Arabidopsis thaliana GN=RAD23B PE=1 SV=3)

HSP 1 Score: 337.4 bits (864), Expect = 2.100e-91
Identity = 211/409 (51.59%), Postives = 270/409 (66.01%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MK+ VKTLKG++FEI     D+++ VKK+IE SQG D YP   Q+LI  GKVLKD T+L 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60

Query: 61  ENGVVDCSFLVVMISKNKPA-AAGASSVSAAPAAPANQAQPQSSTTPAAVAPASVAPQAQ 120
           EN V +  FLVVM+SK+K   +AG +SV  +  +     QP S+TT      +S  P A 
Sbjct: 61  ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVS-----QPVSATT------SSTKPAAP 120

Query: 121 TQTATEPVVAAPAA----PAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDT 180
           + T + PV A+P      PAA  D   YGQAAS LV+GSSLE  +QQI++MGGGSWD++T
Sbjct: 121 STTQSSPVPASPIPAQEQPAAQTD--TYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKET 180

Query: 181 VVRALRAAYNNPERAVEYLYNGIPEQAEVP-PVARTPAAGPTDLQVDDPLVQALNPLAEA 240
           V RALRAAYNNPERAV+YLY+GIP+ AEV  PV     AG               P+A A
Sbjct: 181 VTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAG-----------SGAAPVAPA 240

Query: 241 GNPLAQAPQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQA 300
                          GPN+SPLDLFPQ      + +G   +L+FLRN+ QFQ LR MV +
Sbjct: 241 SG-------------GPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHS 300

Query: 301 NPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEG---EGNLLSQFASAVPPTVS 360
           NPQILQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP EG   EG++  Q    +P  ++
Sbjct: 301 NPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAIN 360

Query: 361 VTTEEREAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDN 401
           VT  E+EAI RLE MGF RA V++ + AC++NEELAANYLL++  +F++
Sbjct: 361 VTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371

[Close]

BLAST of Spo24108.1 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana GN=RAD23A PE=1 SV=2)

HSP 1 Score: 326.2 bits (835), Expect = 4.900e-88
Identity = 201/404 (49.75%), Postives = 262/404 (64.85%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MK+ VKTLKG++FEI     D+++ VKK+IE SQ  D YP   Q+LI  GKVLKD TTL 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPAAVAPASVAPQAQT 120
           EN V +  FLVVM+SK+K A+      SA P++     QP S+TT    +    AP    
Sbjct: 61  ENKVTEEGFLVVMLSKSKTAS------SAGPSS----TQPTSTTTSTISSTTLAAPSTTQ 120

Query: 121 QTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVRAL 180
             A     + P     +   + YGQAAS LV+GSS+E  +QQI++MGGGSWD++TV RAL
Sbjct: 121 SIAVPASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRAL 180

Query: 181 RAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPLAQ 240
           RAAYNNPERAV+YLY+GIPE   +P    T  +G                   +G  L  
Sbjct: 181 RAAYNNPERAVDYLYSGIPETVTIP---ATNLSG-----------------VGSGRELTA 240

Query: 241 APQAAVPATGPNASPLDLFPQGLPNVGSTAGG-ASSLDFLRNSQQFQALRAMVQANPQIL 300
            P    P+ GPN+SPLDLFPQ    V   AGG   +L+FLR + QFQ LR+MV +NPQIL
Sbjct: 241 PP----PSGGPNSSPLDLFPQ--EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQIL 300

Query: 301 QPMLQELGKQNPQLMRLIQEHQADFLRLINEPVE---GEGNLLSQFASAVPPTVSVTTEE 360
           QPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP E   G+ ++  Q    +P +V+VT EE
Sbjct: 301 QPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEE 360

Query: 361 REAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDN 401
           +E+I RLE MGF RA V++ + +C++NEELAANYLL+H  +F++
Sbjct: 361 QESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368

[Close]

BLAST of Spo24108.1 vs. TAIR (Arabidopsis)
Match: AT5G38470.1 (Rad23 UV excision repair protein family)

HSP 1 Score: 458.0 bits (1177), Expect = 6.100e-129
Identity = 268/405 (66.17%), Postives = 310/405 (76.54%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTL G+NFEIE    D V DVK +IE  +GA+ YPA+ QMLI QGKVLKD TTL 
Sbjct: 1   MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSA-APAAPANQAQPQSSTTPAAVAPASVAPQAQ 120
           EN VV+ SF+V+M+SK K + +GAS+ SA AP+A     QPQ+  TP   AP +  P   
Sbjct: 61  ENNVVENSFIVIMLSKTKASPSGASTASAPAPSA----TQPQTVATPQVSAPTASVPVPT 120

Query: 121 TQTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVRA 180
           + TAT    AA  A AAS   +VYGQAASNLVAG++LE+T+QQILDMGGGSWDRDTVVRA
Sbjct: 121 SGTAT----AAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRA 180

Query: 181 LRAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPLA 240
           LRAA+NNPERAVEYLY+GIP QAE+PPVA+ PA G                  +A NPLA
Sbjct: 181 LRAAFNNPERAVEYLYSGIPAQAEIPPVAQAPATGE-----------------QAANPLA 240

Query: 241 QAPQAAVPAT---GPNASPLDLFPQGLPNVGSTAGGASSLDFLRNSQQFQALRAMVQANP 300
           Q  QAA PA    GPNA+PL+LFPQG+P   + AG A +LDFLRNSQQFQALRAMVQANP
Sbjct: 241 QPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAG-AGNLDFLRNSQQFQALRAMVQANP 300

Query: 301 QILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEE 360
           QILQPMLQELGKQNPQL+RLIQEHQADFLRLINEPVEGE N++ Q  +A+P  V+VT EE
Sbjct: 301 QILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEENVMEQLEAAMPQAVTVTPEE 360

Query: 361 REAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDNE 402
           REAI RLEGMGF RA VL+V+FACNKNEELAANYLLDHM EF+++
Sbjct: 361 REAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFEDQ 378

[Close]

BLAST of Spo24108.1 vs. TAIR (Arabidopsis)
Match: AT3G02540.1 (Rad23 UV excision repair protein family)

HSP 1 Score: 455.7 bits (1171), Expect = 3.000e-128
Identity = 276/436 (63.30%), Postives = 314/436 (72.02%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MKIFVKTLKGT+FEIE   +DSVVDVKK+IE  QGADVYPA+ QMLI QGKVLKD TT+ 
Sbjct: 1   MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSA----APAAPANQAQPQ-SSTTPAAV----AP 120
           EN V + SF+V+M++K+KPA+A ASS SA    A + P + +QP  S  TPA+V    AP
Sbjct: 61  ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAP 120

Query: 121 ASV-----------APQAQTQTATEPV-----------VAAPAAPAASGDENVYGQAASN 180
           A             AP A T+T T P+             AP +       +VYGQAASN
Sbjct: 121 APTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASN 180

Query: 181 LVAGSSLETTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYNGIPEQAEVPPVAR 240
           L AGS+LE+TIQQILDMGGG+WDR+TVV ALRAA+NNPERAVEYLY GIPEQAEVPPVAR
Sbjct: 181 LAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPVAR 240

Query: 241 TPAAGPTDLQVDDPLVQALNPLAEAGNPLAQAPQ-AAVPATGPNASPLDLFPQGLPNVGS 300
            PA+                   +  NP AQ  Q AA PA+GPNA+PLDLFPQGLPNVG 
Sbjct: 241 PPASA-----------------GQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGG 300

Query: 301 TAGGASSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLI 360
              GA +LDFLRNSQQFQALRAMVQANPQ+LQPMLQELGKQNP LMRLIQ+HQADFLRLI
Sbjct: 301 NP-GAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLI 360

Query: 361 NEPVEG---EGNLLSQFASAV--PPTVSVTTEEREAIGRLEGMGFRRATVLQVYFACNKN 400
           NEPVEG    GNLL Q A+ +  P  + VT EEREAI RLE MGF RA VL+V+FACNKN
Sbjct: 361 NEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKN 418

[Close]

BLAST of Spo24108.1 vs. TAIR (Arabidopsis)
Match: AT1G79650.4 (Rad23 UV excision repair protein family)

HSP 1 Score: 327.4 bits (838), Expect = 1.200e-89
Identity = 211/421 (50.12%), Postives = 271/421 (64.37%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MK+ VKTLKG++FEI     D+++ VKK+IE SQG D YP   Q+LI  GKVLKD T+L 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60

Query: 61  ENGVVDCSFLVVMISKNKP------AAAGASSVSAAPAAPANQAQPQS-STTPAAVAPAS 120
           EN V +  FLVVM+SK+K       A+   SSVS   +A  +  +P + STT ++  PAS
Sbjct: 61  ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPAS 120

Query: 121 VAPQAQTQTATEPVVAAPAAPA----------ASGDENVYGQAASNLVAGSSLETTIQQI 180
             P AQ Q A    V + A  A          +    + YGQAAS LV+GSSLE  +QQI
Sbjct: 121 PIP-AQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTLVSGSSLEQMVQQI 180

Query: 181 LDMGGGSWDRDTVVRALRAAYNNPERAVEYLYNGIPEQAEVP-PVARTPAAGPTDLQVDD 240
           ++MGGGSWD++TV RALRAAYNNPERAV+YLY+GIP+ AEV  PV     AG        
Sbjct: 181 MEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPVPEAQIAG-------- 240

Query: 241 PLVQALNPLAEAGNPLAQAPQAAVPATGPNASPLDLFPQGLPNVGSTAGGASSLDFLRNS 300
                  P+A A               GPN+SPLDLFPQ      + +G   +L+FLRN+
Sbjct: 241 ---SGAAPVAPASG-------------GPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNN 300

Query: 301 QQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEG---EGNLL 360
            QFQ LR MV +NPQILQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP EG   EG++ 
Sbjct: 301 DQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMF 360

Query: 361 SQFASAVPPTVSVTTEEREAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFD 401
            Q    +P  ++VT  E+EAI RLE MGF RA V++ + AC++NEELAANYLL++  +F+
Sbjct: 361 DQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFE 395

[Close]

BLAST of Spo24108.1 vs. TAIR (Arabidopsis)
Match: AT1G16190.1 (Rad23 UV excision repair protein family)

HSP 1 Score: 326.2 bits (835), Expect = 2.800e-89
Identity = 201/404 (49.75%), Postives = 262/404 (64.85%), Query Frame = 1


		  
Query: 1   MKIFVKTLKGTNFEIEADSDDSVVDVKKSIEKSQGADVYPASLQMLIFQGKVLKDATTLG 60
           MK+ VKTLKG++FEI     D+++ VKK+IE SQ  D YP   Q+LI  GKVLKD TTL 
Sbjct: 1   MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60

Query: 61  ENGVVDCSFLVVMISKNKPAAAGASSVSAAPAAPANQAQPQSSTTPAAVAPASVAPQAQT 120
           EN V +  FLVVM+SK+K A+      SA P++     QP S+TT    +    AP    
Sbjct: 61  ENKVTEEGFLVVMLSKSKTAS------SAGPSS----TQPTSTTTSTISSTTLAAPSTTQ 120

Query: 121 QTATEPVVAAPAAPAASGDENVYGQAASNLVAGSSLETTIQQILDMGGGSWDRDTVVRAL 180
             A     + P     +   + YGQAAS LV+GSS+E  +QQI++MGGGSWD++TV RAL
Sbjct: 121 SIAVPASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRAL 180

Query: 181 RAAYNNPERAVEYLYNGIPEQAEVPPVARTPAAGPTDLQVDDPLVQALNPLAEAGNPLAQ 240
           RAAYNNPERAV+YLY+GIPE   +P    T  +G                   +G  L  
Sbjct: 181 RAAYNNPERAVDYLYSGIPETVTIP---ATNLSG-----------------VGSGRELTA 240

Query: 241 APQAAVPATGPNASPLDLFPQGLPNVGSTAGG-ASSLDFLRNSQQFQALRAMVQANPQIL 300
            P    P+ GPN+SPLDLFPQ    V   AGG   +L+FLR + QFQ LR+MV +NPQIL
Sbjct: 241 PP----PSGGPNSSPLDLFPQ--EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQIL 300

Query: 301 QPMLQELGKQNPQLMRLIQEHQADFLRLINEPVE---GEGNLLSQFASAVPPTVSVTTEE 360
           QPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP E   G+ ++  Q    +P +V+VT EE
Sbjct: 301 QPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEE 360

Query: 361 REAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHMDEFDN 401
           +E+I RLE MGF RA V++ + +C++NEELAANYLL+H  +F++
Sbjct: 361 QESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368

[Close]

BLAST of Spo24108.1 vs. TAIR (Arabidopsis)
Match: AT5G16090.1 (INVOLVED IN: nucleotide-excision repair)

HSP 1 Score: 80.9 bits (198), Expect = 2.000e-15
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 1


		  
Query: 298 ILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGEGNLLSQFASAVPPTVSVTTEER 357
           I +  L+E+ KQNP L ++I+ + A F+ ++N+      N L+Q    +   + VT  + 
Sbjct: 74  ITKGCLEEMEKQNPPLFQMIRHNSAGFVPVLNKESFERDNELAQPEEDLLQ-LQVTAVDD 133

Query: 358 EAIGRLEGMGFRRATVLQVYFACNKNEELAANYLLDHM 396
           EAI RLE MGF R  VL+V+ ACNKNE+LAAN+LLDH+
Sbjct: 134 EAINRLEAMGFERRVVLEVFLACNKNEQLAANFLLDHI 170

The following BLAST results are available for this feature:

BLAST of Spo24108.1 vs. NCBI nr
BLAST of Spo24108.1 vs. UniProtKB/TrEMBL
BLAST of Spo24108.1 vs. ExPASy Swiss-Prot
BLAST of Spo24108.1 vs. TAIR (Arabidopsis)

BLAST of Spo24108.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902224482\|gb\|KNA19800.1\|	1.3e-216	100.	hypothetical protein SOVF_0582...	[more]
gi\|731315784\|ref\|XP_010692904.1\|	3.1e-175	83.5	PREDICTED: ubiquitin receptor ...	[more]
gi\|1009127201\|ref\|XP_015880567.1\|	3.7e-136	69.9	PREDICTED: ubiquitin receptor ...	[more]
gi\|565394960\|ref\|XP_006363121.1\|	1.1e-135	69.9	PREDICTED: ubiquitin receptor ...	[more]
gi\|970011177\|ref\|XP_015066493.1\|	3.9e-133	69.6	PREDICTED: ubiquitin receptor ...	[more]

BLAST of Spo24108.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RJX7_SPIOL	8.7e-217	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CXU4_BETVU	2.2e-175	83.5	Uncharacterized protein OS=Bet...	[more]
M1AYC6_SOLTU	7.6e-136	69.9	Uncharacterized protein OS=Sol...	[more]
Q9STA6_SOLLC	3.5e-133	68.5	RAD23 protein OS=Solanum lycop...	[more]
M5WSP8_PRUPE	4.6e-133	68.9	Uncharacterized protein OS=Pru...	[more]

BLAST of Spo24108.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RD23D_ARATH	1.1e-127	66.1	Ubiquitin receptor RAD23d OS=A...	[more]
RD23C_ARATH	5.4e-127	63.3	Ubiquitin receptor RAD23c OS=A...	[more]
RAD23_ORYSJ	3.9e-109	57.0	Probable ubiquitin receptor RA...	[more]
RD23B_ARATH	2.1e-91	51.5	Ubiquitin receptor RAD23b OS=A...	[more]
RD23A_ARATH	4.9e-88	49.7	Probable ubiquitin receptor RA...	[more]

BLAST of Spo24108.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G38470.1	6.1e-129	66.1	Rad23 UV excision repair prote...	[more]
AT3G02540.1	3.0e-128	63.3	Rad23 UV excision repair prote...	[more]
AT1G79650.4	1.2e-89	50.1	Rad23 UV excision repair prote...	[more]
AT1G16190.1	2.8e-89	49.7	Rad23 UV excision repair prote...	[more]
AT5G16090.1	2.0e-15	44.9	INVOLVED IN: nucleotide-excisi...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 3..76 score: 1.3
IPR000626	Ubiquitin domain	SMART	SM00213	ubq_7	coord: 1..75 score: 3.7
IPR000626	Ubiquitin domain	PROFILE	PS50053	UBIQUITIN_2	coord: 1..79 score: 18
IPR004806	UV excision repair protein Rad23	PRINTS	PR01839	RAD23PROTEIN	coord: 350..366 score: 1.1E-30coord: 382..397 score: 1.1E-30coord: 302..324 score: 1.1E-30coord: 367..381 score: 1.1
IPR004806	UV excision repair protein Rad23	TIGRFAMs	TIGR00601	TIGR00601	coord: 1..398 score: 5.1E
IPR006636	Heat shock chaperonin-binding	SMART	SM00727	CBM	coord: 274..317 score: 4.
IPR009060	UBA-like	unknown	SSF46934	UBA-like	coord: 153..208 score: 2.12E-12coord: 337..399 score: 4.09
IPR015360	XPC-binding domain	GENE3D	1.10.10.540		coord: 272..337 score: 7.4
IPR015360	XPC-binding domain	PFAM	PF09280	XPC-binding	coord: 276..331 score: 4.0
IPR015360	XPC-binding domain	unknown	SSF101238	XPC-binding domain	coord: 272..337 score: 4.45
IPR015940	Ubiquitin-associated domain	PFAM	PF00627	UBA	coord: 156..194 score: 3.0E-15coord: 356..391 score: 1.7
IPR015940	Ubiquitin-associated domain	SMART	SM00165	uba_6	coord: 156..196 score: 1.2E-5coord: 356..393 score: 3.
IPR015940	Ubiquitin-associated domain	PROFILE	PS50030	UBA	coord: 154..197 score: 12.836coord: 353..394 score: 13
None	No IPR available	unknown	Coil	Coil	coord: 303..323 scor
None	No IPR available	GENE3D	1.10.8.10		coord: 149..200 score: 5.2E-20coord: 353..398 score: 5.7
None	No IPR available	GENE3D	3.10.20.90		coord: 1..79 score: 7.6
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 247..396 score: 8.9E-203coord: 2..226 score: 8.9E
None	No IPR available	PANTHER	PTHR10621:SF12	SUBFAMILY NOT NAMED	coord: 2..226 score: 8.9E-203coord: 247..396 score: 8.9E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0006499	N-terminal protein myristoylation
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006605	protein targeting
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0019048	modulation by virus of host morphology or physiology
biological_process	GO:0006417	regulation of translation
biological_process	GO:0009987	cellular process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015976	carbon utilization
biological_process	GO:0009408	response to heat
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006457	protein folding
biological_process	GO:0034976	response to endoplasmic reticulum stress
biological_process	GO:0001731	formation of translation preinitiation complex
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0016004	phospholipase activator activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004743	pyruvate kinase activity
molecular_function	GO:0030955	potassium ion binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo23747	0.77	Barchart \| Table
Spo15819	0.75	Barchart \| Table
Spo26421	0.74	Barchart \| Table
Spo12500	0.72	Barchart \| Table
Spo24150	0.72	Barchart \| Table
Spo26841	0.69	Barchart \| Table
Spo14447	0.67	Barchart \| Table
Spo09974	0.66	Barchart \| Table
Spo20638	0.66	Barchart \| Table
Spo21754	0.66	Barchart \| Table
Spo18763	0.65	Barchart \| Table
Spo14170	0.65	Barchart \| Table
Spo09845	0.65	Barchart \| Table