Spo24087 (gene)

Overview
NameSpo24087
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionB12d-like protein
Locationchr1 : 29115773 .. 29119568 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATTCGGAGAAAACGCCTCGTTCAATCCTCCAATAATTCAACTCTTAGAAATTATTGCTTTTTTTTTAAAAAAAAGGTTAGGTTTTAAAATACCTTCTTCCCCATTTAGACGCCCCAAAAATAACGTCCTGCCTGCTTGTTATATTGACCTCTCCGTCCTTCTGTTTTCTCTCTCCTCCATCTCTGTTTATCTCTCTAACTCAATCATGGGCGGCTTCCGATGGGTCAGACCCGAGGTACTCTCTCCTCCGTCTCTCTTCATCTCTCTTAATTTATCTAATTTTCAAGTTTTTTCTACGATTAACTCAATATTGTTAGATCTGTGTAAATTTTCCGTAGTTAACACGCTAATTTTAACGATTTTAGTTGAAATTGATTTAGATCTAATGGATTAATATATATACATATAGAAAAAGTATTTTTTTGATTTTATTTTTTTAATTAAATGATGTTTGCAGGTTTACCCTCTGTTTGCTTCGGTTGGTGTAGCCGTCGGAATTTGTGGGTTTCAGCTCGTCCGGAATATCTGCGGTAACCCTGAAGTCAGGTATATTTCTCTATCAATTCCTATTATTTTATTTCTTTATTTTCATTTCAGAAACGAATTATGAAAATGATAAAGCGTGGATCCATAATTTTATTAGTTCTGAATTATTTAATTTCATTAGATTGTTTTGGTATATTATTACGGAGTATCGATCTTCAATAGCTGCAATTTCATTACGGAGCACATAGTTTTTATTTAAATTTGATTGAAATTAAGTAAAAGAAAATTTGAGGTCATTGTATATTTGTATAAGTTGGAAGGTAAAATAATAAATTATGGTGTTTCTTTTTTATATTCTTGTGGATCAATTATGGAGCATATGAGGGGTTCATTTAAAAGCTGGGATGAATTTCCCTCAAAATAAGGAAGGAAAATACCTGGGCTGAATGATTTGTAATGCCATTATCGAGTACGGAGTATCTATCTGGCGTAGCCGCGTAGGTGAATGTTTTAACATAGGTTGCCCTGCTCCAGAACAGAAAATCCTATTTTCCGGTTGAAATTTCCGTTAAATGATTGTTCGTGTGCTATTAGTAACTCTTTGATTATAGACTGTTGGATGGTTCCAATCAAGTTGTTGTTTGAGATTTGGAATTACTTAAAACTTGCAGAAGTTGTATGTGTAGTTGCTTTTCTAGGGATGGCATTGGAGTTGTGAATATGCCTTAATTTTTTTGTTAGGCTTGTAAATTGGATGGTTAGGTTTGTGGACATATGGACGATTAGTATCACCTAATTGTCCTATCGCCAATCCTTCTCTTGTGCCCATAAATATTAGCTAGCTAGTGTTCTTCACTGCTGCTAATCACAGTTTGATTGGAAAGTGGCCTAATGAATGTGTGCATGTCGACTGTTACTTGGCTACCTTGAAAGTATTAAGGATGTTGCCATGTTGGTCACTCATATTTCAATTTGGAATCTGAAAGTCCTCGTAGTTTTTTCTTTTCCCCAGATGAGAAAGTACTTGAAGTTGATAGGAACCTTAGTTGCTTGTGTTTTTCCAATTGTACACCAATAATAATGATCGTAATACTTAAACCTGTAGCTGAGAGCCTGAGAGTATTGTGTCTATTGACCTCTGTCCCGTGTTGCCTCAATCAGCAGCTGTTGGAAAGTACTCTCTGGACATAGGACTTCATTGTTTTTGTTTAAGATACTATTCATTATGATGATGAGGAAATTATAGACATTAATTATCCGGATTCCGGAAACTAAAAGGGTGAAAACTTAACTGGTGTGTTACTACTTAGTGCTGAAAGCTTTAAGCAGTTCAAACACATTGTTTAAGACTCCTGCATTCTGTATTTATCTTGTTTATTAGTTCCATACACCAAAATACACCTTTACATTTAGGCTCCGTTTGGTATGGTGTAAAATATTTTCATGGAAAACGATTTTTCCCTTTTCAATCATTTTACTTTGTTTGGTTTGGCAAGGATGAAAAACAATTTTCTATAACTCACTCAAAGGTGAAACAACCTTTTCCATTTGAAAGGGAGGGAAACCACTTTTCCACCTTTCCACCTTTCGTCCCTACCTCCCTCTCACTTCTTCCCCTCAATCTTCACCATCTTCTCCCATTTTCTTTTAAGGAACCAAATGAAGAAAAACTAGTTTGAAATTGTATTTTTCCTTGGAAAATCATTTTGCACTGAAAACGTTTTAACCAAACCAAACGGAGCTTTAGTACAGCTCTCTGATTAAAATCCAGGAATCAAAACTGAGTCTAATAAGGGACAGTATTCTTCTTGCTTCCTGCATTTTATCTATTTTGTTCCAGCTTGCATACACCAACAGTCTAACATATCTAATAATTCATAGTGATGCTATGGAGTATCACAGAGTATACTTTTACTCACGATTCAATAGATGTTCGGTTATGTTGACGAATGATGCATTTGATTATGAGTTAGAACCTCTCTTTTGGCCAAAATGTAGCATAAGAAAGTATGATGAAGCAATAAGAACCACAAATAGGTTGCATCCATCTTTTGATAGAACTGGTGTGGCATGTGAAAGAGAGGAATCACAAATGAGTTCATGACTTTTTAAGTTATGTTTTTCAATAGTATTGTGAGAATTAAAATCGTACCTTTCTTAGAATATTTTGATATTCAATCAATCAATTGAAATGGAGTATCAAAAGTTGAAGCACAATACGGATATTACTAGTAATAGCTCAAGATTTGCATAAGTGTAAGTTTAAACTGCGACTTAAAAGTGAGCTTCGTTGCTGTATAGTGTGTGTGTGTGGTTAGAAATCTTAGAGGGAAGAGGAGGAAAGATTTTTTTTTCTTTCTAATTTTTTGAATATTGAAAAGATTTGAGTTTCTAAAGGTGTAAGAACAATGGATTATTAGCTCTATTCTCCAATTCCCTTACTTTCCATAATCAAACAAGGAAATATTGGCCCCTCTTTCAACACATTGTTAGCTCTATTCTACAAACTTACAAAGTGAAGACTTGTTCATTGTGCATTTTAATTTCTACCGTGCTTGACATTCTTAGTTTCTTAGTACCACGAAAGAAATATTGGGTTAATTTTGTCAAATTCACGGTATTTGTTTACAGACCCTTGCACATTTTTGTTGCTTAGCTTTTCCTTTGAAATGTCCAGGGTGATTAAGGAAAAGCGAGCTGCTGGAATCCTTGATAATTTTGCAGAGGGAGAGAAATATGCACAGCATTCTCTCAGGAAGTTTGTGCGCAACAAGAGCCCTGAAATTATGCCAGGTCTTAACAGCTTCTTCAGTGACCCACAGTGAACGTGTTGATTCTGTTCCTGATTTATAATGGTGGATCTTTACTGAAAGTTTCTTCCCTATTTGACAAACGAACTTGATCATGTGATATAATGTTTGAACGAAGATAGCAATGGGTTACTTGGTCTACCCTCTAATTTTTTTGAACTCTTTGAGATATTTGATTATCGAAACTGGTTCAACCCATTCAAGGGAGACCATGTAAATTTAAAAAACATAGTCTCATTGCTTTTTGAATAATCGTATCAAGTTTCAATATTTGCTTCAATTGATTTTAGTTAGTAGATAAAAGAAATGGAGTTGTATGGTGTACTGGTGTTGCTGTATTTGAGCTCGTATCGCTCCTTGTCATTTTGTTTTCACAAATTCTTATTTACAATGGGTGTACAACCGGAGTAAAAGTTAACTCAAAATGCTTAAAAGTTAAGCATATATATGTAAAAGTTATCTATTTTTCCATGATAAATTTTTTTATTTTAGTAAAAC

mRNA sequence

ATATTCGGAGAAAACGCCTCGTTCAATCCTCCAATAATTCAACTCTTAGAAATTATTGCTTTTTTTTTAAAAAAAAGGTTAGGTTTTAAAATACCTTCTTCCCCATTTAGACGCCCCAAAAATAACGTCCTGCCTGCTTGTTATATTGACCTCTCCGTCCTTCTGTTTTCTCTCTCCTCCATCTCTGTTTATCTCTCTAACTCAATCATGGGCGGCTTCCGATGGGTCAGACCCGAGGTTTACCCTCTGTTTGCTTCGGTTGGTGTAGCCGTCGGAATTTGTGGGTTTCAGCTCGTCCGGAATATCTGCGGTAACCCTGAAGTCAGGGTGATTAAGGAAAAGCGAGCTGCTGGAATCCTTGATAATTTTGCAGAGGGAGAGAAATATGCACAGCATTCTCTCAGGAAGTTTGTGCGCAACAAGAGCCCTGAAATTATGCCAGGTCTTAACAGCTTCTTCAGTGACCCACAGTGAACGTGTTGATTCTGTTCCTGATTTATAATGGTGGATCTTTACTGAAAGTTTCTTCCCTATTTGACAAACGAACTTGATCATGTGATATAATGTTTGAACGAAGATAGCAATGGGTTACTTGGTCTACCCTCTAATTTTTTTGAACTCTTTGAGATATTTGATTATCGAAACTGGTTCAACCCATTCAAGGGAGACCATGTAAATTTAAAAAACATAGTCTCATTGCTTTTTGAATAATCGTATCAAGTTTCAATATTTGCTTCAATTGATTTTAGTTAGTAGATAAAAGAAATGGAGTTGTATGGTGTACTGGTGTTGCTGTATTTGAGCTCGTATCGCTCCTTGTCATTTTGTTTTCACAAATTCTTATTTACAATGGGTGTACAACCGGAGTAAAAGTTAACTCAAAATGCTTAAAAGTTAAGCATATATATGTAAAAGTTATCTATTTTTCCATGATAAATTTTTTTATTTTAGTAAAAC

Coding sequence (CDS)

ATGGGCGGCTTCCGATGGGTCAGACCCGAGGTTTACCCTCTGTTTGCTTCGGTTGGTGTAGCCGTCGGAATTTGTGGGTTTCAGCTCGTCCGGAATATCTGCGGTAACCCTGAAGTCAGGGTGATTAAGGAAAAGCGAGCTGCTGGAATCCTTGATAATTTTGCAGAGGGAGAGAAATATGCACAGCATTCTCTCAGGAAGTTTGTGCGCAACAAGAGCCCTGAAATTATGCCAGGTCTTAACAGCTTCTTCAGTGACCCACAGTGA

Protein sequence

MGGFRWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKYAQHSLRKFVRNKSPEIMPGLNSFFSDPQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo24087.1Spo24087.1mRNA


Homology
[Close]
BLAST of Spo24087.1 vs. NCBI nr
Match: gi|902171786|gb|KNA08045.1| (hypothetical protein SOVF_166260 [Spinacia oleracea])

HSP 1 Score: 186.8 bits (473), Expect = 1.600e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

		  

Query: 1  MGGFRWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKY 60
          MGGFRWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKY
Sbjct: 1  MGGFRWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKY 60

Query: 61 AQHSLRKFVRNKSPEIMPGLNSFFSDPQ 89
          AQHSLRKFVRNKSPEIMPGLNSFFSDPQ
Sbjct: 61 AQHSLRKFVRNKSPEIMPGLNSFFSDPQ 88
[Close]
BLAST of Spo24087.1 vs. NCBI nr
Match: gi|697122934|ref|XP_009615457.1| (PREDICTED: uncharacterized protein LOC104108174 [Nicotiana tomentosiformis])

HSP 1 Score: 159.8 bits (403), Expect = 2.100e-36
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 1 

		  

Query: 5  RWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKYAQHS 64
          RW+RPEVYPLFA+VGVAVGICG QLVRNICGNPEVRV KE RAAG+LDNF+EGEKYA+H+
Sbjct: 8  RWLRPEVYPLFAAVGVAVGICGMQLVRNICGNPEVRVTKENRAAGVLDNFSEGEKYAEHA 67

Query: 65 LRKFVRNKSPEIMPGLNSFFSDPQ 89
          LRKFVRNKSPEIMP +N FFSDP+
Sbjct: 68 LRKFVRNKSPEIMPSINGFFSDPK 91
[Close]
BLAST of Spo24087.1 vs. NCBI nr
Match: gi|698559017|ref|XP_009771458.1| (PREDICTED: uncharacterized protein LOC104221988 [Nicotiana sylvestris])

HSP 1 Score: 159.8 bits (403), Expect = 2.100e-36
Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 1 

		  

Query: 5  RWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKYAQHS 64
          RW+RPEVYPLFA+VGVAVGICG QLVRNICGNPEVRV KE RAAG+LDNF+EGEKYA+H+
Sbjct: 8  RWLRPEVYPLFAAVGVAVGICGMQLVRNICGNPEVRVTKENRAAGVLDNFSEGEKYAEHA 67

Query: 65 LRKFVRNKSPEIMPGLNSFFSDPQ 89
          LRKFVRNKSPEIMP +N FFSDP+
Sbjct: 68 LRKFVRNKSPEIMPNINGFFSDPK 91
[Close]
BLAST of Spo24087.1 vs. NCBI nr
Match: gi|729410750|ref|XP_010556171.1| (PREDICTED: uncharacterized protein LOC104825524 [Tarenaya hassleriana])

HSP 1 Score: 156.0 bits (393), Expect = 3.100e-35
Identity = 72/88 (81.82%), Postives = 77/88 (87.50%), Query Frame = 1 

		  

Query: 1  MGGFRWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKY 60
          M   RW+RPEVYPLFASVGVAVGICG QLVRNIC NPEVRV KE RAAGIL+NF EGEKY
Sbjct: 1  MTASRWIRPEVYPLFASVGVAVGICGMQLVRNICSNPEVRVTKENRAAGILENFEEGEKY 60

Query: 61 AQHSLRKFVRNKSPEIMPGLNSFFSDPQ 89
           +H LRKFVR+KSPEIMP +NSFFSDPQ
Sbjct: 61 KEHRLRKFVRSKSPEIMPSINSFFSDPQ 88
[Close]
BLAST of Spo24087.1 vs. NCBI nr
Match: gi|700209184|gb|KGN64280.1| (hypothetical protein Csa_1G045780 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 4.000e-35
Identity = 69/83 (83.13%), Postives = 78/83 (93.98%), Query Frame = 1 

		  

Query: 5  RWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKYAQHS 64
          RW+RPEVYPLFA+VGVAVGICGFQL+RNIC NPEVRV KE RAAG+LDNFAEGEKY++H 
Sbjct: 9  RWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAEGEKYSEHF 68

Query: 65 LRKFVRNKSPEIMPGLNSFFSDP 88
          LRKFVRNKSPEIMP +N+FF+DP
Sbjct: 69 LRKFVRNKSPEIMPSINNFFTDP 91
[Close]
BLAST of Spo24087.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLA9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_166260 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.100e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

		  

Query: 1  MGGFRWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKY 60
          MGGFRWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKY
Sbjct: 1  MGGFRWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKY 60

Query: 61 AQHSLRKFVRNKSPEIMPGLNSFFSDPQ 89
          AQHSLRKFVRNKSPEIMPGLNSFFSDPQ
Sbjct: 61 AQHSLRKFVRNKSPEIMPGLNSFFSDPQ 88
[Close]
BLAST of Spo24087.1 vs. UniProtKB/TrEMBL
Match: A0A059CZL2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00320 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.800e-35
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 1 

		  

Query: 1  MGGFRWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKY 60
          M G RW+RPEVYPLFA+VGVAVGICGF LVR+IC NPEVRV KE RAAG+LDNF EGEKY
Sbjct: 1  MAGNRWIRPEVYPLFAAVGVAVGICGFSLVRHICINPEVRVTKENRAAGVLDNFKEGEKY 60

Query: 61 AQHSLRKFVRNKSPEIMPGLNSFFSDP 88
          A+HSLRKFVRN+SPEIMP LNSFF+ P
Sbjct: 61 AEHSLRKFVRNRSPEIMPSLNSFFTSP 87
[Close]
BLAST of Spo24087.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LQT3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045780 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.800e-35
Identity = 69/83 (83.13%), Postives = 78/83 (93.98%), Query Frame = 1 

		  

Query: 5  RWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKYAQHS 64
          RW+RPEVYPLFA+VGVAVGICGFQL+RNIC NPEVRV KE RAAG+LDNFAEGEKY++H 
Sbjct: 9  RWLRPEVYPLFAAVGVAVGICGFQLIRNICINPEVRVTKENRAAGVLDNFAEGEKYSEHF 68

Query: 65 LRKFVRNKSPEIMPGLNSFFSDP 88
          LRKFVRNKSPEIMP +N+FF+DP
Sbjct: 69 LRKFVRNKSPEIMPSINNFFTDP 91
[Close]
BLAST of Spo24087.1 vs. UniProtKB/TrEMBL
Match: M0ZLV5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001395 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.600e-35
Identity = 69/83 (83.13%), Postives = 77/83 (92.77%), Query Frame = 1 

		  

Query: 5  RWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKYAQHS 64
          RW+RPEVYPLFA+VGVAVGICG QLVRNIC NPEVRV KE RAAG+LDNF+EGEKY++H+
Sbjct: 8  RWLRPEVYPLFAAVGVAVGICGMQLVRNICTNPEVRVTKENRAAGVLDNFSEGEKYSEHA 67

Query: 65 LRKFVRNKSPEIMPGLNSFFSDP 88
          LRKFVRNKSPEIMP +N FFSDP
Sbjct: 68 LRKFVRNKSPEIMPSINGFFSDP 90
[Close]
BLAST of Spo24087.1 vs. UniProtKB/TrEMBL
Match: A0A0D2N5K0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G047700 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.600e-35
Identity = 69/84 (82.14%), Postives = 79/84 (94.05%), Query Frame = 1 

		  

Query: 5  RWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKYAQHS 64
          RW+RPEVYPLFA+VGVAVGICGFQLVRNIC NPEVRV KE RAAG+LDNFAEGEKY++H 
Sbjct: 4  RWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVTKENRAAGVLDNFAEGEKYSEHF 63

Query: 65 LRKFVRNKSPEIMPGLNSFFSDPQ 89
          LRK+VRNK+PEIMP +NSFF+DP+
Sbjct: 64 LRKYVRNKTPEIMPSINSFFTDPK 87
[Close]
BLAST of Spo24087.1 vs. TAIR (Arabidopsis)
Match: AT3G48140.1 (B12D protein)

HSP 1 Score: 143.3 bits (360), Expect = 7.200e-35
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = 1 

		  

Query: 5  RWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKYAQHS 64
          RW+RPEVYPLFA+ GVAVGIC F L+RNI GNPEVR  KE RAAGILDN AEGEKY ++ 
Sbjct: 4  RWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENF 63

Query: 65 LRKFVRNKSPEIMPGLNSFFSDP 88
          LRKFVRNK PEIMPGLN FF+DP
Sbjct: 64 LRKFVRNKKPEIMPGLNKFFTDP 86
[Close]
BLAST of Spo24087.1 vs. TAIR (Arabidopsis)
Match: AT3G29970.1 (B12D protein)

HSP 1 Score: 102.4 bits (254), Expect = 1.400e-22
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1 

		  

Query: 5  RWVRPEVYPLFASVGVAVGICGFQLVRNICGNPEVRVIKEKRAAGILDNFAEGEKYAQHS 64
          RWVRPEVYPL  ++G    +  FQL RN   NP+ R+ KE R  GIL+N  EGEKYAQH+
Sbjct: 3  RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHN 62

Query: 65 LRKFVRNKSPEIMPGLNSFFS 86
           RK++R + P++MP LN FFS
Sbjct: 63 FRKYLRTRQPQVMPSLNRFFS 83
The following BLAST results are available for this feature:
BLAST of Spo24087.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902171786|gb|KNA08045.1|1.6e-44100.hypothetical protein SOVF_1662... [more]
gi|697122934|ref|XP_009615457.1|2.1e-3684.5PREDICTED: uncharacterized pro... [more]
gi|698559017|ref|XP_009771458.1|2.1e-3684.5PREDICTED: uncharacterized pro... [more]
gi|729410750|ref|XP_010556171.1|3.1e-3581.8PREDICTED: uncharacterized pro... [more]
gi|700209184|gb|KGN64280.1|4.0e-3583.1hypothetical protein Csa_1G045... [more]
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BLAST of Spo24087.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QLA9_SPIOL1.1e-44100.Uncharacterized protein OS=Spi... [more]
A0A059CZL2_EUCGR2.8e-3581.6Uncharacterized protein OS=Euc... [more]
A0A0A0LQT3_CUCSA2.8e-3583.1Uncharacterized protein OS=Cuc... [more]
M0ZLV5_SOLTU3.6e-3583.1Uncharacterized protein OS=Sol... [more]
A0A0D2N5K0_GOSRA3.6e-3582.1Uncharacterized protein OS=Gos... [more]
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BLAST of Spo24087.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo24087.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G48140.17.2e-3578.3B12D protein[more]
AT3G29970.11.4e-2255.5B12D protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010530NADH-ubiquinone reductase complex 1 MLRQ subunitPFAMPF06522B12Dcoord: 8..75
score: 1.8
NoneNo IPR availablePANTHERPTHR33417FAMILY NOT NAMEDcoord: 1..88
score: 6.8
NoneNo IPR availablePANTHERPTHR33417:SF2SUBFAMILY NOT NAMEDcoord: 1..88
score: 6.8

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043248 proteasome assembly
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005634 nucleus
cellular_component GO:0000502 proteasome complex
molecular_function GO:0005515 protein binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo198650.70Barchart | Table
Spo055310.65Barchart | Table