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Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCATGATTTTGATATTTTGACATGGAAAAGAAACCACCCACTTACAAAAGAACACAAAGCTTCCACATTGGGCCCACCTCCACATGCCCCCACACTAACGGACAAACCAACCGAATACGAGAGTGTTACCGGTTTTACGAAATTAGTTGGGCCCACATACAGGCATACAGCTCAAACAAGATTCGTTCTTTCTCTTTATATCGATCGATCCACCCACTTTCTCCATTCTCTCTGCTTCAACCATGGAGAACGATACGGCGTCGTTGCAGGTGTCGGAAGAAGTTTCCTTTTTGGGCAATAATAGAACAACTACCTTAAAGGAAGAAGAGAGAGAAAGTATTGAAATGGGTACCAGCGTCGACCGGGAACCGGAAATTACCAGTCCTCGCCGGAGAATTCCCAGTCAAGGGATCCAATCTACGACCGGACAGTCGTCGTTTCGAAGGGATTTTGAGCATGCTGCTGCTGAGACTTACCTGATGTCCGGATTTGCCTTCAAACTTCTTAGCTATCTTGGGTAATTTTTTTTTAATTACTATTTAGGATTTGATGAATTGTTTGAAGTCGTTTTTGTTTAGGTTATTAGATTATGTTTTATTGATCATTTTGAATTTGTGGAGTACTATGTTGGAATGTCCGGAAAGCATAATAGTCATAAATGAAATGTCCGACAAACGGTTGTCATCCTTTTCAAAATAGTAATGGTTAGAACATTGTTAAGAGTATTATTTAGTAGAGGGTTTGTGACCATGGACTCCACAATTAGTTATAGTATGCTGGTCTACTTGTAGGATAGAATTTTCGGAAAACTCAAGAGTTGGGTAACTTTTCGAATATGTGATTGGTTTGAGGGTAGGTTGATGGGGGTACTCATGTGAAGTACATACTACATAGTAGTTTTATTTTTTGTTGTGTATTGGGACTAAGTAGACAACTGTTGTTTGTTATTTGTTAGAAGTAGTAAGGAGTAGGAAGTAAGGTTATGTGCCTATGAGTTTAATGAGTATATGTCTTCCAGTGAACTTTCTTGGTGTGAAGTGAATGAATGGAGGAAGGGTAACTCGGGTAGGATACACACACACCAGGCTATGGTTTTGGGTTGGCATATGTAATCCTTTGTACTTTGGAGAATATGGAAATGGTGTCTCCAGAGAGAAAATATGAAAGCTGTACCTAAAACTGTAAATGTAGTGAAGATAGTGTTCAAGTGAGTGACTGGCGACAAGACTTAATATGATGGGGACTCGTGAATGGTGTGGTAAAGAATGAAATTTTGAAGGGTTAAATGGTGATTCGTAATTATGAGAGCCGGAACAAGAACACAGAAGAGAGTTCTATATAAGGAAACTATCACCTCACATCTTATTCACCTTTAGCTTCTTGAGAAGCTGCCTTCTAATTGTTTGGCCGTGATAGGTTGTTTCTAGCCTTTCGGTTTCAGATTACTTTCGCGAGCTTGTATGACTTTTATGTTATTGACGTGGATGTTTGAATTGAAGTTTGAGTTAGACTTTCTTATTTGGGAGTTATTTTGGTTTCTAATCATTTGCTCATTCAGGGTAGGTTACCGCTGGATTACTGGATTACTTGCACTTCTCTGTTACGCCATGCTACTTTTACCTGGTTTCCTTCAGGGTAAGATGATTGTTATGAGTAAATGCAACAATCTGATGTTTTTAGTAAATTGAAAGTTGTTTTCAATTGTCAGGCATAGTATATATTAGGGGCATATGGACAATTCATATCAAACAATACTAACAATACACCAATTTGAGATACTAACTACTTTGTATAAGCCTAAGTATTATCAAAGTTGGAAAAAAAAAGTACCTTAACTGTCTGTGACTGTGCAGAGCTGATCAATTAGCATATACATGCTCTTTTAGCATTTACCTTCAGCTCATAGTTTTTATTCTTAACCTTGTGATTGACCATTGTTTTGTTTATTTATATAAGTGTTGCAATAAACTTCAATAAATCTTCGTGCAGTTGCCTATTATTATTACTTTTCAAGCCAAGTACATAGGAGTATCATTTATGGAGATCAACCAAGAAATAGGTATGTCTTCACTTTATATTGTTGCTATTATTGGTTTTGAGGAGTGTGCCAACAAATTTAATAATATCGTTACATGGAAATACCTTGTGCAGTATGCTCAACTAAGAAAAATGAATTAGGACTAATATGCATAATTACCATTTATCCTACTTATTTCTTACTAATATGTTACTAAATGATTGTAATTGTCACTATGCTATGCAGGTTAGACCTTTATTTGCCGATGGATCCTCATGGAAAGAAGCCGGTTGTGATATTTGTAACAGGTGGAGCCTGGATTATTGGGTGAGTTATGTGTCAAGAACTCACTTTGAGTTATTGTTATTATTAGTTTTGTTTACAGGAAAAAGACATTTCCGTAGTTTGTCTTAGTAATAACAACATTAGTTGACTGTATCAGTAAAAAGTTTAGGAGTCAAAACTGCAGAGGCACATGAAGTTTGTTCTTATTGATTGCTCTGGAGTTATTGTCTAACAAAGAACTGGATCCTTGAAAAAAAAAAGGGTTTACAAGCTCTATTATACATCTATTTTGACGAGTAGGAACATTGGGAGTTGGGACTCTGCTATAAGTTGGCTTTCTTTTATGCTCTGGTTGAACCATTCAAGCTAGTCTCCAGTTATTACTGGTTGAGGAATGTGTGTCTTCTTTCCTGACAATTCCTCCTTCTCTTTGTCAGTTTCTCCTTTTGCTGGGTTGTTTCCTTGGAATTGGGTAATTGGAACAAGGTCTAGGGCCTCAACAGCTCTACCTTGTTACTGTTATAAGCTGTTCATGATATTTTGAGACGCAACATGTTGTTGCCAACAACTTAAAATGTATCACTCTAATTATGACTACGTATGTTCTTATTCTCTGGAAATGAGAAGTTTACCCCTTTTCAATCATAGTCGTCGTGGTTCATGTATGTACGAGCATTTGTGTTGTGAGTGTTTTCAAGGATTTGGTAAGAGTAAGTAGTAGTTATGTCACGATGCATTCATGGCCATTTTGTGGAGTTATTGTCTAACAAAGAACTGGATCCTTGAAAAGAAAAATTATGTTTACAAGCTCTATTATGCTTCTACTTTTACGAGTAGGAACATGGGAGTTGGGACTCTGCTATAAGTTGGCTTTCTTTTATGCTCTGGTTGAACCGTTCAAGCTAGTCTCCAGTTATTACTCCTCCTTCTCGTTGTCAATTTCTCCTTTTTCTGGGTTGTTTCCTTGGAATTGGGGAATCGGAGCAAGGTCTAGGGCCTCAACAGCTCAACCATGTTACTCTTTTAAGCTGTTCATGATATTTTGAGACACAAAATGTTGTTGCAATAACTTAAAATGAAACTTCTAGCCTAATTATGTACTACGTATGTTCTTATTATATGGAAAAAATGAGAACTTTATGCCTTTTCAATTATAGTCATTGTGGTTCATGTATGTACGAGCATTTGTATTGTGAGTGTTTTCGAGGATTTGGTAAGAGTAAGTAGTAGTTATTTCACGATGCATTCATGGCCATTTTGTGGTGTGTGTGGTTGGAGCTAAATCTCTGATCTTTCACGTGTTTCTTTGTCTTCTGATTAGTTGTGGGACAAAGTTAGTTTTATGACGGGCTAAGGGGGCGGGGGGTTTTCTGGGGAAATTCAAAGGAACTGGTTGATCTGTAATTTACTTTTAGAAGACAGCTTGTCCTCTTTTGCTTGTACTCCTTTTCTGGAGGTGCTATAATAGTACTTTTTTCTTATAAAAAAAATTGTTGCTTTAACTTGTGAGTGCAACCCCTTGGATTTCTGACTCGAATTTCCAGCAATGTGGTGGCATTGACTAATTATAAATACATCAGTAATGTTGTCAAGATTGAACAATTTTTTCCGTTGTGTATAATTTTGTCTTTTGTTGGTCATGCTGATTTAGATACAAAGCATGGGGTTCCCTTCTTGGGCTACAATTGGCGGAGAGAGACATCATAGTGGCCTGCCTTGACTATAGGTAAGGATTATATGCATATCCATATATCTTTTGTGTGATGAAAGACACTGATTTATTCTGCCAATTTGGTATTCAATTCAGGTTGATTGAGCTGTATATATTACTAAGATAGTTCACAAAGGAGAAGTGGAAACAATAGAAAGGCCTATTTTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTTGTTTGTGTTTCTTTTCTTCCCCCTGTGTGTAAATGTCCACGTAAAATGATTAGCGAGGCATTCTTACCACCAAACTGTTCATGCAGAAACTTTCCTCAAGGAACCGTCAGTGACATGATCAAAGATGTTTCTCAGGGTATCTCATTTGTGTGTAATAATATTGCCGCTGTTGGAGGGGATCCTGACAGGTAGTTGACTTATAACTTCAATTCAAGTTTTGCTTCTTGTCATATTGTTGATGATTTCTGCCTTATTTGGGTATAGAGTTTATCTTATTGGGCAATCAGCTGGTGCACATTTATCAACATGTGCTCTCCTGGAGCAGGCTACCAGAGAGTCACAAGGAGAGAGCTGTTTTTGGAGTGTCTCACAGATAAAAGCTTATTTTTCTTTATCTGGCGGGTATGCAATTATCTAATCATGATTTTGATATTTTGACATGGAAAAGAAACCACCCACTTACAAAAGAACACAAAGCTTCCACATTGGGCCCACCTCCACATGCCCCCACACTAACGGACAAACCAACCGAATACGAGAGTGTTACCGGTTTTACGAAATTAGTTGGGCCCACATACAGGCATACAGCTCAAACAAGATTCGTTCTTTCTCTTTATATCGATCGATCCACCCACTTTCTCCATTCTCTCTGCTTCAACCATGGAGAACGATACGGCGTCGTTGCAGGTGTCGGAAGAAGTTTCCTTTTTGGGCAATAATAGAACAACTACCTTAAAGGAAGAAGAGAGAGAAAGTATTGAAATGGGTACCAGCGTCGACCGGGAACCGGAAATTACCAGTCCTCGCCGGAGAATTCCCAGTCAAGGGATCCAATCTACGACCGGACAGTCGTCGTTTCGAAGGGATTTTGAGCATGCTGCTGCTGAGACTTACCTGATGTCCGGATTTGCCTTCAAACTTCTTAGCTATCTTGGGGTAGGTTACCGCTGGATTACTGGATTACTTGCACTTCTCTGTTACGCCATGCTACTTTTACCTGGTTTCCTTCAGGTTGCCTATTATTATTACTTTTCAAGCCAAGTACATAGGAGTATCATTTATGGAGATCAACCAAGAAATAGGTTAGACCTTTATTTGCCGATGGATCCTCATGGAAAGAAGCCGGTTGTGATATTTGTAACAGGTGGAGCCTGGATTATTGGATACAAAGCATGGGGTTCCCTTCTTGGGCTACAATTGGCGGAGAGAGACATCATAGTGGCCTGCCTTGACTATAGAAACTTTCCTCAAGGAACCGTCAGTGACATGATCAAAGATGTTTCTCAGGGTATCTCATTTGTGTGTAATAATATTGCCGCTGTTGGAGGGGATCCTGACAGAGTTTATCTTATTGGGCAATCAGCTGGTGCACATTTATCAACATGTGCTCTCCTGGAGCAGGCTACCAGAGAGTCACAAGGAGAGAGCTGTTTTTGGAGTGTCTCACAGATAAAAGCTTATTTTTCTTTATCTGGCGGGTATGCAATTATCTAA ATGGAGAACGATACGGCGTCGTTGCAGGTGTCGGAAGAAGTTTCCTTTTTGGGCAATAATAGAACAACTACCTTAAAGGAAGAAGAGAGAGAAAGTATTGAAATGGGTACCAGCGTCGACCGGGAACCGGAAATTACCAGTCCTCGCCGGAGAATTCCCAGTCAAGGGATCCAATCTACGACCGGACAGTCGTCGTTTCGAAGGGATTTTGAGCATGCTGCTGCTGAGACTTACCTGATGTCCGGATTTGCCTTCAAACTTCTTAGCTATCTTGGGGTAGGTTACCGCTGGATTACTGGATTACTTGCACTTCTCTGTTACGCCATGCTACTTTTACCTGGTTTCCTTCAGGTTGCCTATTATTATTACTTTTCAAGCCAAGTACATAGGAGTATCATTTATGGAGATCAACCAAGAAATAGGTTAGACCTTTATTTGCCGATGGATCCTCATGGAAAGAAGCCGGTTGTGATATTTGTAACAGGTGGAGCCTGGATTATTGGATACAAAGCATGGGGTTCCCTTCTTGGGCTACAATTGGCGGAGAGAGACATCATAGTGGCCTGCCTTGACTATAGAAACTTTCCTCAAGGAACCGTCAGTGACATGATCAAAGATGTTTCTCAGGGTATCTCATTTGTGTGTAATAATATTGCCGCTGTTGGAGGGGATCCTGACAGAGTTTATCTTATTGGGCAATCAGCTGGTGCACATTTATCAACATGTGCTCTCCTGGAGCAGGCTACCAGAGAGTCACAAGGAGAGAGCTGTTTTTGGAGTGTCTCACAGATAAAAGCTTATTTTTCTTTATCTGGCGGGTATGCAATTATCTAA MENDTASLQVSEEVSFLGNNRTTTLKEEERESIEMGTSVDREPEITSPRRRIPSQGIQSTTGQSSFRRDFEHAAAETYLMSGFAFKLLSYLGVGYRWITGLLALLCYAMLLLPGFLQVAYYYYFSSQVHRSIIYGDQPRNRLDLYLPMDPHGKKPVVIFVTGGAWIIGYKAWGSLLGLQLAERDIIVACLDYRNFPQGTVSDMIKDVSQGISFVCNNIAAVGGDPDRVYLIGQSAGAHLSTCALLEQATRESQGESCFWSVSQIKAYFSLSGGYAII Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo24060.1 vs. NCBI nr
Match: gi|902234206|gb|KNA23364.1| (hypothetical protein SOVF_025240 [Spinacia oleracea]) HSP 1 Score: 543.5 bits (1399), Expect = 2.100e-151 Identity = 273/274 (99.64%), Postives = 273/274 (99.64%), Query Frame = 1
BLAST of Spo24060.1 vs. NCBI nr
Match: gi|731315630|ref|XP_010692383.1| (PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 442.2 bits (1136), Expect = 6.700e-121 Identity = 219/277 (79.06%), Postives = 240/277 (86.64%), Query Frame = 1
BLAST of Spo24060.1 vs. NCBI nr
Match: gi|567174366|ref|XP_006400112.1| (hypothetical protein EUTSA_v10013599mg [Eutrema salsugineum]) HSP 1 Score: 357.1 bits (915), Expect = 2.800e-95 Identity = 180/264 (68.18%), Postives = 215/264 (81.44%), Query Frame = 1
BLAST of Spo24060.1 vs. NCBI nr
Match: gi|727642166|ref|XP_010492439.1| (PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME-like [Camelina sativa]) HSP 1 Score: 354.4 bits (908), Expect = 1.800e-94 Identity = 169/219 (77.17%), Postives = 192/219 (87.67%), Query Frame = 1
BLAST of Spo24060.1 vs. NCBI nr
Match: gi|42573379|ref|NP_974786.1| (prenylcysteine methylesterase [Arabidopsis thaliana]) HSP 1 Score: 351.7 bits (901), Expect = 1.200e-93 Identity = 180/264 (68.18%), Postives = 210/264 (79.55%), Query Frame = 1
BLAST of Spo24060.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWR5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_025240 PE=4 SV=1) HSP 1 Score: 543.5 bits (1399), Expect = 1.500e-151 Identity = 273/274 (99.64%), Postives = 273/274 (99.64%), Query Frame = 1
BLAST of Spo24060.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FRX1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026280 PE=4 SV=1) HSP 1 Score: 442.2 bits (1136), Expect = 4.700e-121 Identity = 219/277 (79.06%), Postives = 240/277 (86.64%), Query Frame = 1
BLAST of Spo24060.1 vs. UniProtKB/TrEMBL
Match: V4KUE7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10013599mg PE=4 SV=1) HSP 1 Score: 357.1 bits (915), Expect = 2.000e-95 Identity = 180/264 (68.18%), Postives = 215/264 (81.44%), Query Frame = 1
BLAST of Spo24060.1 vs. UniProtKB/TrEMBL
Match: A0A087G7H2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G166100 PE=4 SV=1) HSP 1 Score: 351.7 bits (901), Expect = 8.300e-94 Identity = 181/270 (67.04%), Postives = 212/270 (78.52%), Query Frame = 1
BLAST of Spo24060.1 vs. UniProtKB/TrEMBL
Match: R0H783_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10001044mg PE=4 SV=1) HSP 1 Score: 350.5 bits (898), Expect = 1.900e-93 Identity = 170/231 (73.59%), Postives = 195/231 (84.42%), Query Frame = 1
BLAST of Spo24060.1 vs. ExPASy Swiss-Prot
Match: ICME_ARATH (Isoprenylcysteine alpha-carbonyl methylesterase ICME OS=Arabidopsis thaliana GN=ICME PE=2 SV=1) HSP 1 Score: 351.3 bits (900), Expect = 9.800e-96 Identity = 180/262 (68.70%), Postives = 209/262 (79.77%), Query Frame = 1
BLAST of Spo24060.1 vs. ExPASy Swiss-Prot
Match: ICML2_ARATH (Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 OS=Arabidopsis thaliana GN=ICMEL2 PE=2 SV=1) HSP 1 Score: 347.8 bits (891), Expect = 1.100e-94 Identity = 179/273 (65.57%), Postives = 203/273 (74.36%), Query Frame = 1
BLAST of Spo24060.1 vs. ExPASy Swiss-Prot
Match: IMCL2_ORYSJ (Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 OS=Oryza sativa subsp. japonica GN=IMCEL2 PE=2 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 4.400e-88 Identity = 161/250 (64.40%), Postives = 191/250 (76.40%), Query Frame = 1
BLAST of Spo24060.1 vs. ExPASy Swiss-Prot
Match: IMCE_ORYSJ (Probable isoprenylcysteine alpha-carbonyl methylesterase ICME OS=Oryza sativa subsp. japonica GN=IMCE PE=2 SV=1) HSP 1 Score: 322.0 bits (824), Expect = 6.300e-87 Identity = 151/214 (70.56%), Postives = 179/214 (83.64%), Query Frame = 1
BLAST of Spo24060.1 vs. ExPASy Swiss-Prot
Match: ICML1_ARATH (Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 OS=Arabidopsis thaliana GN=ICMEL1 PE=2 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 1.600e-85 Identity = 151/223 (67.71%), Postives = 181/223 (81.17%), Query Frame = 1
BLAST of Spo24060.1 vs. TAIR (Arabidopsis)
Match: AT5G15860.1 (prenylcysteine methylesterase) HSP 1 Score: 351.3 bits (900), Expect = 5.500e-97 Identity = 180/262 (68.70%), Postives = 209/262 (79.77%), Query Frame = 1
BLAST of Spo24060.1 vs. TAIR (Arabidopsis)
Match: AT3G02410.1 (alpha/beta-Hydrolases superfamily protein) HSP 1 Score: 347.8 bits (891), Expect = 6.100e-96 Identity = 179/273 (65.57%), Postives = 203/273 (74.36%), Query Frame = 1
BLAST of Spo24060.1 vs. TAIR (Arabidopsis)
Match: AT1G26120.1 (alpha/beta-Hydrolases superfamily protein) HSP 1 Score: 317.4 bits (812), Expect = 8.800e-87 Identity = 151/223 (67.71%), Postives = 181/223 (81.17%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo24060.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo24060.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo24060.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo24060.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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