Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGTAAATTCGTCTGATAAGGGTTGTTCTATTTTCCCCTATAGAGCAAACTAGAGAGAAGAACATCACAAAACTTGTAAAAATTGGCGGGTAAACAAAAATGCTGCTGCTAAGAAGTCGTCACTTCCTCCCTCAAATATCATCCTCTCTACTGCTACCCACCATTTCCCATTCCCCAAAACCATTCAATCTCTCCCTTTCCTTTCCTCTGCAAACATCATTCTCTATCTCCTCCACCAACCTCCATCGACATGCGTTCTCCAGCTCTGCGGCTCCTCCGCCGCCTTCTGACACCGCCAAGTTCGCCAGCACCGTGCTCTTTGTCCCGCCGGGTGTCGAACCGAATGAAGTTACTGAAGATATGATCCTACCCGGGTCCAACATTGTGATTGGGCCTTATGCGGGTCATTCCCAGATTAAGGAAGTTACATTTGTGAAGAGTAGTAACCGGTCTAAAGATTGCCCGAATGATGGCTTGCCTGAATTTGCTGTTCTGGGTCGTTCTAATGTTGGGAAATCTTCTCTTATAAATACTCTTGTTAAGAAGAAAGAGGTTGCTTTGACTTCTAAGAAGCCAGGTTTTGTTCTTGCTTGTTTTCTCTCTTGCCCACCACCTGTTTGTTTAAATTCCTCAATGTGAAGAACAGTTATTGCTCAAAAAGTATGTAGAACACAATCAACTGAAATTTGAATTAGTTCTGAAATGTGATTATGTAAGGCGAGATGATTCATGCTTGGGGTTTCATTTGTTTTTGATTTGGGTGTTGAATCATCTGCAGGGAAGACTCAGCTTATTAACCATTTCCTGATTAACAAGAGTTGGTATATTGTTGATTTGCCTGGATATGGGTGAGTTCCTGGATTTTTAGTTTTATGTTATGGGTAATTTCAGTATTTTTGTAGACTCTATTCATGCTATGAATCAATACAGTAATGATGATATGCTGCATCAGTTCTTGCACAGTGTATCATGTGCATCAGCTACATCAATTCTGCAGTGTATACATCAGTTGTTATCCGCGCTAATATTTGACATCAGCTTGAATCGTCTAGTTGAATTACTCATCATTTATTTATTGCGAATTGAAATGTCTTCGTGCTACGTTGCAGCATTCAATTTTGAATTTGTTCTCGCATTTGCTGATAAGGCCATTGGCTCAGGAGAAGGGGAAAGGGGGGATATGTAGTTCCACACTTCCACTATCCTCCATTCGGTCTCCTATTGTGTTTGCTAATTTAGATCTCAGCAAGAAAGTGTTCAATTTTTGAAGTAAACATCATCATCTTGATTAAGATACTGCCCTTAAATGACTTGTATTGTGCCAGAAAACCATGTATCTTGCAGCCTTAGCTAACGTTGTTGGGGTAGCAAGTGCTGCTGTTCCTAACTTGTTACTCCGTATTTTAATGTATATAATGATCTAATAATTGTTTCAATTGTGCAGCACTTGTAAGATCACTTCTTATGTCTGATTGTACTGATTTTCTAACTCAGATTTGCCAAAGCCTCGGACTCTGCTCGAACGGATTGGTCTACATTCACTAAAGGATACTTCTTGAACAGAGATGCGCTTGTTACCGTGCTACTCCTAGTTGATGCAAGTGTTCCCCCACAAAAGATAGATGTTGATTGTGCTAATTGGCTCGGACGCAACAATGTATTAAACACACAACTACTATTGTTCGTGAATTTAATAGCTTTGGATGTATGTAGCTCAAATGTTTCACTGAATTTCCATTGTTTGTTGCTTTTGTTTGTGCCTTTCAGATACCCATCACCTTTGTGTTCACCAAGTGTGATAAGATGAAAGGTGGAAAAGGTGCACGGCCTGAGGAAAACATCAGAAGTTTCCACGAGCTTATCAGGCAGAACTACAAGCAACATCCCCCATGGATCATGACTAGCAGTGTCACTGCTTTAGGCAGGGATCAACTTCTTCTCCATATGTCACAGCTTAGAAACTATTGGGATAATTAGGAACTACCAACTATATTACAAGTTTTCTATGTTTGCAAAGTAATCAGTTTGTTAGATACTACAGTATGACATTCCAGGTTTCACAAAAGTAAATCAACATATTGTATGTTTGTAACTCTCTCCTTACCTTTATGAGATTCAAATTTTGTCAAATCACTTGTCTACTACTACACGCCAGATTGGACATTGCAGATTAGAACCATTTTGTTAATGACCTGCTGTAATATTCAATGCTCCGATTTTTTTAATTCAGCTAACTAATACAAGCTCAAGTATTGTATGTACAATAATGTAATTAAACACCTCAGTGCTTGTTGCTCAATGCCCT CGTAAATTCGTCTGATAAGGGTTGTTCTATTTTCCCCTATAGAGCAAACTAGAGAGAAGAACATCACAAAACTTGTAAAAATTGGCGGGTAAACAAAAATGCTGCTGCTAAGAAGTCGTCACTTCCTCCCTCAAATATCATCCTCTCTACTGCTACCCACCATTTCCCATTCCCCAAAACCATTCAATCTCTCCCTTTCCTTTCCTCTGCAAACATCATTCTCTATCTCCTCCACCAACCTCCATCGACATGCGTTCTCCAGCTCTGCGGCTCCTCCGCCGCCTTCTGACACCGCCAAGTTCGCCAGCACCGTGCTCTTTGTCCCGCCGGGTGTCGAACCGAATGAAGTTACTGAAGATATGATCCTACCCGGGTCCAACATTGTGATTGGGCCTTATGCGGGTCATTCCCAGATTAAGGAAGTTACATTTGTGAAGAGTAGTAACCGGTCTAAAGATTGCCCGAATGATGGCTTGCCTGAATTTGCTGTTCTGGGTCGTTCTAATGTTGGGAAATCTTCTCTTATAAATACTCTTGTTAAGAAGAAAGAGGTTGCTTTGACTTCTAAGAAGCCAGGGAAGACTCAGCTTATTAACCATTTCCTGATTAACAAGAGTTGGTATATTGTTGATTTGCCTGGATATGGATTTGCCAAAGCCTCGGACTCTGCTCGAACGGATTGGTCTACATTCACTAAAGGATACTTCTTGAACAGAGATGCGCTTGTTACCGTGCTACTCCTAGTTGATGCAAGTGTTCCCCCACAAAAGATAGATGTTGATTGTGCTAATTGGCTCGGACGCAACAATATACCCATCACCTTTGTGTTCACCAAGTGTGATAAGATGAAAGGTGGAAAAGGTGCACGGCCTGAGGAAAACATCAGAAGTTTCCACGAGCTTATCAGGCAGAACTACAAGCAACATCCCCCATGGATCATGACTAGCAGTGTCACTGCTTTAGGCAGGGATCAACTTCTTCTCCATATGTCACAGCTTAGAAACTATTGGGATAATTAGGAACTACCAACTATATTACAAGTTTTCTATGTTTGCAAAGTAATCAGTTTGTTAGATACTACAGTATGACATTCCAGGTTTCACAAAAGTAAATCAACATATTGTATGTTTGTAACTCTCTCCTTACCTTTATGAGATTCAAATTTTGTCAAATCACTTGTCTACTACTACACGCCAGATTGGACATTGCAGATTAGAACCATTTTGTTAATGACCTGCTGTAATATTCAATGCTCCGATTTTTTTAATTCAGCTAACTAATACAAGCTCAAGTATTGTATGTACAATAATGTAATTAAACACCTCAGTGCTTGTTGCTCAATGCCCT ATGCTGCTGCTAAGAAGTCGTCACTTCCTCCCTCAAATATCATCCTCTCTACTGCTACCCACCATTTCCCATTCCCCAAAACCATTCAATCTCTCCCTTTCCTTTCCTCTGCAAACATCATTCTCTATCTCCTCCACCAACCTCCATCGACATGCGTTCTCCAGCTCTGCGGCTCCTCCGCCGCCTTCTGACACCGCCAAGTTCGCCAGCACCGTGCTCTTTGTCCCGCCGGGTGTCGAACCGAATGAAGTTACTGAAGATATGATCCTACCCGGGTCCAACATTGTGATTGGGCCTTATGCGGGTCATTCCCAGATTAAGGAAGTTACATTTGTGAAGAGTAGTAACCGGTCTAAAGATTGCCCGAATGATGGCTTGCCTGAATTTGCTGTTCTGGGTCGTTCTAATGTTGGGAAATCTTCTCTTATAAATACTCTTGTTAAGAAGAAAGAGGTTGCTTTGACTTCTAAGAAGCCAGGGAAGACTCAGCTTATTAACCATTTCCTGATTAACAAGAGTTGGTATATTGTTGATTTGCCTGGATATGGATTTGCCAAAGCCTCGGACTCTGCTCGAACGGATTGGTCTACATTCACTAAAGGATACTTCTTGAACAGAGATGCGCTTGTTACCGTGCTACTCCTAGTTGATGCAAGTGTTCCCCCACAAAAGATAGATGTTGATTGTGCTAATTGGCTCGGACGCAACAATATACCCATCACCTTTGTGTTCACCAAGTGTGATAAGATGAAAGGTGGAAAAGGTGCACGGCCTGAGGAAAACATCAGAAGTTTCCACGAGCTTATCAGGCAGAACTACAAGCAACATCCCCCATGGATCATGACTAGCAGTGTCACTGCTTTAGGCAGGGATCAACTTCTTCTCCATATGTCACAGCTTAGAAACTATTGGGATAATTAG MLLLRSRHFLPQISSSLLLPTISHSPKPFNLSLSFPLQTSFSISSTNLHRHAFSSSAAPPPPSDTAKFASTVLFVPPGVEPNEVTEDMILPGSNIVIGPYAGHSQIKEVTFVKSSNRSKDCPNDGLPEFAVLGRSNVGKSSLINTLVKKKEVALTSKKPGKTQLINHFLINKSWYIVDLPGYGFAKASDSARTDWSTFTKGYFLNRDALVTVLLLVDASVPPQKIDVDCANWLGRNNIPITFVFTKCDKMKGGKGARPEENIRSFHELIRQNYKQHPPWIMTSSVTALGRDQLLLHMSQLRNYWDN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo24044.1 vs. NCBI nr
Match: gi|902196934|gb|KNA13271.1| (hypothetical protein SOVF_118330 [Spinacia oleracea]) HSP 1 Score: 618.6 bits (1594), Expect = 5.800e-174 Identity = 305/306 (99.67%), Postives = 306/306 (100.00%), Query Frame = 1
BLAST of Spo24044.1 vs. NCBI nr
Match: gi|731315595|ref|XP_010692167.1| (PREDICTED: GTP-binding protein At2g22870 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 498.0 bits (1281), Expect = 1.100e-137 Identity = 256/312 (82.05%), Postives = 272/312 (87.18%), Query Frame = 1
BLAST of Spo24044.1 vs. NCBI nr
Match: gi|802646026|ref|XP_012079436.1| (PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]) HSP 1 Score: 456.4 bits (1173), Expect = 3.800e-125 Identity = 224/304 (73.68%), Postives = 259/304 (85.20%), Query Frame = 1
BLAST of Spo24044.1 vs. NCBI nr
Match: gi|255568647|ref|XP_002525297.1| (PREDICTED: GTP-binding protein At2g22870 [Ricinus communis]) HSP 1 Score: 456.4 bits (1173), Expect = 3.800e-125 Identity = 217/280 (77.50%), Postives = 247/280 (88.21%), Query Frame = 1
BLAST of Spo24044.1 vs. NCBI nr
Match: gi|568824154|ref|XP_006466467.1| (PREDICTED: GTP-binding protein At2g22870 [Citrus sinensis]) HSP 1 Score: 455.7 bits (1171), Expect = 6.500e-125 Identity = 226/307 (73.62%), Postives = 254/307 (82.74%), Query Frame = 1
BLAST of Spo24044.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R171_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118330 PE=3 SV=1) HSP 1 Score: 618.6 bits (1594), Expect = 4.000e-174 Identity = 305/306 (99.67%), Postives = 306/306 (100.00%), Query Frame = 1
BLAST of Spo24044.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CXJ9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g026080 PE=3 SV=1) HSP 1 Score: 498.0 bits (1281), Expect = 7.900e-138 Identity = 256/312 (82.05%), Postives = 272/312 (87.18%), Query Frame = 1
BLAST of Spo24044.1 vs. UniProtKB/TrEMBL
Match: B9SH28_RICCO (GTP-binding protein engB, putative OS=Ricinus communis GN=RCOM_0581560 PE=3 SV=1) HSP 1 Score: 456.4 bits (1173), Expect = 2.600e-125 Identity = 217/280 (77.50%), Postives = 247/280 (88.21%), Query Frame = 1
BLAST of Spo24044.1 vs. UniProtKB/TrEMBL
Match: A0A067K7J6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12558 PE=3 SV=1) HSP 1 Score: 456.4 bits (1173), Expect = 2.600e-125 Identity = 224/304 (73.68%), Postives = 259/304 (85.20%), Query Frame = 1
BLAST of Spo24044.1 vs. UniProtKB/TrEMBL
Match: V4SFI5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026170mg PE=3 SV=1) HSP 1 Score: 453.8 bits (1166), Expect = 1.700e-124 Identity = 226/307 (73.62%), Postives = 252/307 (82.08%), Query Frame = 1
BLAST of Spo24044.1 vs. ExPASy Swiss-Prot
Match: Y2287_ARATH (GTP-binding protein At2g22870 OS=Arabidopsis thaliana GN=EMB2001 PE=2 SV=2) HSP 1 Score: 426.4 bits (1095), Expect = 2.600e-118 Identity = 194/243 (79.84%), Postives = 222/243 (91.36%), Query Frame = 1
BLAST of Spo24044.1 vs. ExPASy Swiss-Prot
Match: ENGB_BACFN (Probable GTP-binding protein EngB OS=Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343) GN=engB PE=3 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.200e-46 Identity = 88/196 (44.90%), Postives = 126/196 (64.29%), Query Frame = 1
BLAST of Spo24044.1 vs. ExPASy Swiss-Prot
Match: ENGB_BACFR (Probable GTP-binding protein EngB OS=Bacteroides fragilis (strain YCH46) GN=engB PE=3 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.200e-46 Identity = 88/196 (44.90%), Postives = 126/196 (64.29%), Query Frame = 1
BLAST of Spo24044.1 vs. ExPASy Swiss-Prot
Match: ENGB_BACTN (Probable GTP-binding protein EngB OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=engB PE=3 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 7.800e-46 Identity = 85/196 (43.37%), Postives = 126/196 (64.29%), Query Frame = 1
BLAST of Spo24044.1 vs. ExPASy Swiss-Prot
Match: ENGB_GRAFK (Probable GTP-binding protein EngB OS=Gramella forsetii (strain KT0803) GN=engB PE=3 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.000e-45 Identity = 86/198 (43.43%), Postives = 130/198 (65.66%), Query Frame = 1
BLAST of Spo24044.1 vs. TAIR (Arabidopsis)
Match: AT2G22870.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein) HSP 1 Score: 426.4 bits (1095), Expect = 1.500e-119 Identity = 194/243 (79.84%), Postives = 222/243 (91.36%), Query Frame = 1
BLAST of Spo24044.1 vs. TAIR (Arabidopsis)
Match: AT5G11480.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein) HSP 1 Score: 289.7 bits (740), Expect = 2.200e-78 Identity = 159/314 (50.64%), Postives = 208/314 (66.24%), Query Frame = 1
BLAST of Spo24044.1 vs. TAIR (Arabidopsis)
Match: AT5G58370.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein) HSP 1 Score: 112.1 bits (279), Expect = 6.200e-25 Identity = 70/196 (35.71%), Postives = 96/196 (48.98%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo24044.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo24044.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo24044.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo24044.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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