Spo23770 (gene)

Overview
NameSpo23770
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionAvr9/Cf-9 rapidly elicited protein 75
Locationchr2 : 53597044 .. 53597631 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGAATCACAAGTATGGGAAGACAACAATGCAAAAAGCACCCCAAACACCGCCAATCCCCTGGTGTTTGCTCACTTTGTCTCTCGGAAAAACTATCTAAAGTCTCCACCACCACCACCGCCGCCCGTTCCGCCATCATCCGAGCTCGTGCTCGTGTCTACTATCAGTCCTCTTCCTCTTCCTCCTCCTCCTCATCTCTTTCCTCCACGAACGACTCTTCGGCCGCGGCCTCCCCCTTACACGACGGCGGAGGCTCCTCCACGGCTCGCCACCGGAGGATCGTTTCCGATGTGCGAACCAAGGAGGGGTCATCGTCGTCGTCGTTGTTGTTTTTTAGTAAGAGTAAATCCATGGCGGCTCATGTTGGAAAAGGGAAGTTATTATTAAGATCATCAAAAGATAATGAAGATGAAGATGATAAAAAGAAGAATATGAAAAAGAATGTGAGGAGATTATGGGCTAATCTGATTCGATTAGGGAGAAATGAGCAAAAACGTGTTAATGCAGAAGATGTTGATCTTAAGATTATACCTCATCATCATCAGCTTGCTAGTTCTAGCAGTGCTAGTATGGTTGTTTATTGA

mRNA sequence

ATGATGAGAATCACAAGTATGGGAAGACAACAATGCAAAAAGCACCCCAAACACCGCCAATCCCCTGGTGTTTGCTCACTTTGTCTCTCGGAAAAACTATCTAAAGTCTCCACCACCACCACCGCCGCCCGTTCCGCCATCATCCGAGCTCGTGCTCGTGTCTACTATCAGTCCTCTTCCTCTTCCTCCTCCTCCTCATCTCTTTCCTCCACGAACGACTCTTCGGCCGCGGCCTCCCCCTTACACGACGGCGGAGGCTCCTCCACGGCTCGCCACCGGAGGATCGTTTCCGATGTGCGAACCAAGGAGGGGTCATCGTCGTCGTCGTTGTTGTTTTTTAGTAAGAGTAAATCCATGGCGGCTCATGTTGGAAAAGGGAAGTTATTATTAAGATCATCAAAAGATAATGAAGATGAAGATGATAAAAAGAAGAATATGAAAAAGAATGTGAGGAGATTATGGGCTAATCTGATTCGATTAGGGAGAAATGAGCAAAAACGTGTTAATGCAGAAGATGTTGATCTTAAGATTATACCTCATCATCATCAGCTTGCTAGTTCTAGCAGTGCTAGTATGGTTGTTTATTGA

Coding sequence (CDS)

ATGATGAGAATCACAAGTATGGGAAGACAACAATGCAAAAAGCACCCCAAACACCGCCAATCCCCTGGTGTTTGCTCACTTTGTCTCTCGGAAAAACTATCTAAAGTCTCCACCACCACCACCGCCGCCCGTTCCGCCATCATCCGAGCTCGTGCTCGTGTCTACTATCAGTCCTCTTCCTCTTCCTCCTCCTCCTCATCTCTTTCCTCCACGAACGACTCTTCGGCCGCGGCCTCCCCCTTACACGACGGCGGAGGCTCCTCCACGGCTCGCCACCGGAGGATCGTTTCCGATGTGCGAACCAAGGAGGGGTCATCGTCGTCGTCGTTGTTGTTTTTTAGTAAGAGTAAATCCATGGCGGCTCATGTTGGAAAAGGGAAGTTATTATTAAGATCATCAAAAGATAATGAAGATGAAGATGATAAAAAGAAGAATATGAAAAAGAATGTGAGGAGATTATGGGCTAATCTGATTCGATTAGGGAGAAATGAGCAAAAACGTGTTAATGCAGAAGATGTTGATCTTAAGATTATACCTCATCATCATCAGCTTGCTAGTTCTAGCAGTGCTAGTATGGTTGTTTATTGA

Protein sequence

MMRITSMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSSSSSSSLSSTNDSSAAASPLHDGGGSSTARHRRIVSDVRTKEGSSSSSLLFFSKSKSMAAHVGKGKLLLRSSKDNEDEDDKKKNMKKNVRRLWANLIRLGRNEQKRVNAEDVDLKIIPHHHQLASSSSASMVVY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23770.1Spo23770.1mRNA


Homology
[Close]
BLAST of Spo23770.1 vs. NCBI nr
Match: gi|902193083|gb|KNA12195.1| (hypothetical protein SOVF_128090 [Spinacia oleracea])

HSP 1 Score: 352.1 bits (902), Expect = 6.400e-94
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1 

		  

Query: 1   MMRITSMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSS 60
           MMRITSMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSS
Sbjct: 1   MMRITSMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSS 60

Query: 61  SSSSSSSLSSTNDSSAAASPLHDGGGSSTARHRRIVSDVRTKEGSSSSSLLFFSKSKSMA 120
           SSSSSSSLSSTNDSSAAASPLHDGGGSSTARHRRIVSDVRTKEGSSSSSLLFFSKSKSMA
Sbjct: 61  SSSSSSSLSSTNDSSAAASPLHDGGGSSTARHRRIVSDVRTKEGSSSSSLLFFSKSKSMA 120

Query: 121 AHVGKGKLLLRSSKDNEDEDDKKKNMKKNVRRLWANLIRLGRNEQKRVNAEDVDLKIIPH 180
           AHVGKGKLLLRSSKDNEDEDDKKKNMKKNVRRLWANLIRLGRNEQKRVNAEDVDLKIIPH
Sbjct: 121 AHVGKGKLLLRSSKDNEDEDDKKKNMKKNVRRLWANLIRLGRNEQKRVNAEDVDLKIIPH 180

Query: 181 HHQLASSSSASMVVY 196
           HHQLASSSSASMVVY
Sbjct: 181 HHQLASSSSASMVVY 195
[Close]
BLAST of Spo23770.1 vs. NCBI nr
Match: gi|731313112|ref|XP_010678096.1| (PREDICTED: uncharacterized protein LOC104893660 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.4 bits (350), Expect = 6.500e-30
Identity = 107/195 (54.87%), Postives = 129/195 (66.15%), Query Frame = 1 

		  

Query: 11  QCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSSSSSSSLSS 70
           QCKKH KH+QSPGVCSLCLSEKLSKV  TT  +RSA+IRARARVYY SSSSSSSSS LSS
Sbjct: 33  QCKKHSKHKQSPGVCSLCLSEKLSKVPPTT--SRSAMIRARARVYYHSSSSSSSSSDLSS 92

Query: 71  TNDSSAAASPLHDGGGSSTARHRRIVSDVR---TKEGSSSSSLLFFSKSKSMAAHVGKGK 130
             DS A+ +       S T  HRRIVSDVR    KE + ++ ++ FSKSKSM AHV K  
Sbjct: 93  GCDSYASPTV-----ASPTRHHRRIVSDVRAMNVKEDNITNEVV-FSKSKSM-AHVEK-- 152

Query: 131 LLLRSSKDNEDEDDKKKNMKKNVRRLWANLIRLGRNEQKRVNAEDVDLKIIPHHHQLASS 190
                     ++ +KKKN   NV R W NL+RLGRN+QKRVNAE +D K++      +SS
Sbjct: 153 ----------EKTNKKKN-NNNVGRFWTNLLRLGRNDQKRVNAEVIDRKVLIKSRSSSSS 205

Query: 191 -------SSASMVVY 196
                  SS+++V Y
Sbjct: 213 LQQPPLPSSSTVVAY 205
[Close]
BLAST of Spo23770.1 vs. NCBI nr
Match: gi|729440053|ref|XP_010521295.1| (PREDICTED: uncharacterized protein LOC104800226 [Tarenaya hassleriana])

HSP 1 Score: 62.0 bits (149), Expect = 1.300e-6
Identity = 54/110 (49.09%), Postives = 63/110 (57.27%), Query Frame = 1 

		  

Query: 3   RITSMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSS 62
           R ++MG  QCKKHPKHRQSPGVCSLCL++KLS++ST   A+ S      A  Y  SS  S
Sbjct: 31  RSSAMG--QCKKHPKHRQSPGVCSLCLNQKLSRLSTLDHASSSGAGPETAS-YCSSSDVS 90

Query: 63  SSSSSLSSTNDSSAAASPLHDGGGSSTARHRRIVSDVRTKEGSSSSSLLF 113
           SSSSS SS    S   SPLH        R+  IVS    K+G      LF
Sbjct: 91  SSSSSYSSV---SPCLSPLHH-------RYGEIVS---KKKGGKKQGFLF 124
[Close]
BLAST of Spo23770.1 vs. NCBI nr
Match: gi|976913471|gb|KVH99728.1| (Uncharacterized protein family UPF0503 [Cynara cardunculus var. scolymus])

HSP 1 Score: 61.2 bits (147), Expect = 2.300e-6
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 1 

		  

Query: 3  RITSMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSS 62
          R +S    +CKKHPKH+QSPGVCSLCL E+LSK+S ++    S +I       Y SS S 
Sbjct: 8  RPSSSSSMKCKKHPKHQQSPGVCSLCLRERLSKISRSS----SRVITYACSSSYSSSGSI 67

Query: 63 SSSSSLSSTNDSSAAASPLH 83
          SS SS +S+   S  ASP+H
Sbjct: 68 SSISSAASSGALSNTASPMH 83
[Close]
BLAST of Spo23770.1 vs. NCBI nr
Match: gi|697129280|ref|XP_009618697.1| (PREDICTED: uncharacterized protein LOC104110843 [Nicotiana tomentosiformis])

HSP 1 Score: 61.2 bits (147), Expect = 2.300e-6
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 1 

		  

Query: 12  CKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSSSSSSSLSST 71
           CKKHPKH+Q+PGVCS+CLSEKLS +S TT+ + +  I          +SSSSS SSLSS+
Sbjct: 29  CKKHPKHKQNPGVCSVCLSEKLSMLSKTTSRSNTTTI----------TSSSSSLSSLSSS 88

Query: 72  NDSSAAASPLHDGGGSST-ARHRRIVSDVRTKEG 105
           +D S+ +SP H    ++   + R +   +R +EG
Sbjct: 89  SDVSSCSSPPHYRTDNNVLTKSRSLALIMRRREG 112
[Close]
BLAST of Spo23770.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QY68_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_128090 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 4.500e-94
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 1 

		  

Query: 1   MMRITSMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSS 60
           MMRITSMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSS
Sbjct: 1   MMRITSMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSS 60

Query: 61  SSSSSSSLSSTNDSSAAASPLHDGGGSSTARHRRIVSDVRTKEGSSSSSLLFFSKSKSMA 120
           SSSSSSSLSSTNDSSAAASPLHDGGGSSTARHRRIVSDVRTKEGSSSSSLLFFSKSKSMA
Sbjct: 61  SSSSSSSLSSTNDSSAAASPLHDGGGSSTARHRRIVSDVRTKEGSSSSSLLFFSKSKSMA 120

Query: 121 AHVGKGKLLLRSSKDNEDEDDKKKNMKKNVRRLWANLIRLGRNEQKRVNAEDVDLKIIPH 180
           AHVGKGKLLLRSSKDNEDEDDKKKNMKKNVRRLWANLIRLGRNEQKRVNAEDVDLKIIPH
Sbjct: 121 AHVGKGKLLLRSSKDNEDEDDKKKNMKKNVRRLWANLIRLGRNEQKRVNAEDVDLKIIPH 180

Query: 181 HHQLASSSSASMVVY 196
           HHQLASSSSASMVVY
Sbjct: 181 HHQLASSSSASMVVY 195
[Close]
BLAST of Spo23770.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D6F8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g008470 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.600e-30
Identity = 107/195 (54.87%), Postives = 129/195 (66.15%), Query Frame = 1 

		  

Query: 11  QCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSSSSSSSLSS 70
           QCKKH KH+QSPGVCSLCLSEKLSKV  TT  +RSA+IRARARVYY SSSSSSSSS LSS
Sbjct: 33  QCKKHSKHKQSPGVCSLCLSEKLSKVPPTT--SRSAMIRARARVYYHSSSSSSSSSDLSS 92

Query: 71  TNDSSAAASPLHDGGGSSTARHRRIVSDVR---TKEGSSSSSLLFFSKSKSMAAHVGKGK 130
             DS A+ +       S T  HRRIVSDVR    KE + ++ ++ FSKSKSM AHV K  
Sbjct: 93  GCDSYASPTV-----ASPTRHHRRIVSDVRAMNVKEDNITNEVV-FSKSKSM-AHVEK-- 152

Query: 131 LLLRSSKDNEDEDDKKKNMKKNVRRLWANLIRLGRNEQKRVNAEDVDLKIIPHHHQLASS 190
                     ++ +KKKN   NV R W NL+RLGRN+QKRVNAE +D K++      +SS
Sbjct: 153 ----------EKTNKKKN-NNNVGRFWTNLLRLGRNDQKRVNAEVIDRKVLIKSRSSSSS 205

Query: 191 -------SSASMVVY 196
                  SS+++V Y
Sbjct: 213 LQQPPLPSSSTVVAY 205
[Close]
BLAST of Spo23770.1 vs. UniProtKB/TrEMBL
Match: A0A103XZF9_CYNCS (Uncharacterized protein family UPF0503 OS=Cynara cardunculus var. scolymus GN=Ccrd_022043 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.600e-6
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 1 

		  

Query: 3  RITSMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSS 62
          R +S    +CKKHPKH+QSPGVCSLCL E+LSK+S ++    S +I       Y SS S 
Sbjct: 8  RPSSSSSMKCKKHPKHQQSPGVCSLCLRERLSKISRSS----SRVITYACSSSYSSSGSI 67

Query: 63 SSSSSLSSTNDSSAAASPLH 83
          SS SS +S+   S  ASP+H
Sbjct: 68 SSISSAASSGALSNTASPMH 83
[Close]
BLAST of Spo23770.1 vs. UniProtKB/TrEMBL
Match: A0A0D2TST8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G280100 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.600e-6
Identity = 62/151 (41.06%), Postives = 82/151 (54.30%), Query Frame = 1 

		  

Query: 6   SMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSSSSS 65
           S   + CK+HPKHRQSPGVCSLCL +KLSK+ +      ++ IR   ++   + S SSSS
Sbjct: 14  SKPNEGCKRHPKHRQSPGVCSLCLVDKLSKLPSPPHC--TSTIRTATKLADSNCSPSSSS 73

Query: 66  SSLSSTNDSSAAASPLHDGGGSSTARHRRIVSDVRTKEGSSSSSLLFFS------KSKSM 125
           SSLSS   SSA+ S L+    S   R+R      + +   SS SLL+FS      KS+S+
Sbjct: 74  SSLSSP-CSSASDSALYSSSSSPMHRYR----FGKDRGAGSSFSLLWFSGKNLLTKSRSV 133

Query: 126 AAHVGKGKLLLRSSKDNEDEDDKKKNMKKNV 151
           A           S  +N   DDKKK  KK +
Sbjct: 134 A---------FVSRIENNGYDDKKKKKKKKI 148
[Close]
BLAST of Spo23770.1 vs. UniProtKB/TrEMBL
Match: A0A061FFT3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_034853 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.000e-6
Identity = 56/140 (40.00%), Postives = 75/140 (53.57%), Query Frame = 1 

		  

Query: 6   SMGRQQCKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSSSSS 65
           S   + C++HPKHRQSPGVCSLCL EKLS++S  T++      R+       SSSSSSS 
Sbjct: 21  SKPNEGCRRHPKHRQSPGVCSLCLGEKLSQLSAHTSS------RSITTTVSSSSSSSSSL 80

Query: 66  SSLSSTNDSSAAASPLHDGGGSSTARHRRIVSDVRTKEGSSSS-SLLFFSKSKSMAAHVG 125
           SS  S++ +S+ +SP+H        R+R       T EG  +S SLL FS    +     
Sbjct: 81  SSYHSSSSASSCSSPMH--------RYR------FTTEGKGTSLSLLLFSGKNILTK--- 137

Query: 126 KGKLLLRSSKDNEDEDDKKK 145
              L   S    ++ DDKKK
Sbjct: 141 SRSLAFASRMRRKEGDDKKK 137
[Close]
BLAST of Spo23770.1 vs. TAIR (Arabidopsis)
Match: AT1G22470.1 (unknown protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.800e-7
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 1 

		  

Query: 12  CKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSSSSSSSLSST 71
           CKKHPKHRQSPG+CSLCL+E LSK+S+                 +   SSS SSSSL+ T
Sbjct: 41  CKKHPKHRQSPGICSLCLNESLSKLSSE----------------FYDYSSSMSSSSLAKT 100

Query: 72  NDSSAAASPLHDGGGSSTA 91
             S ++AS   +   SSTA
Sbjct: 101 MSSCSSASSESESDFSSTA 103
[Close]
BLAST of Spo23770.1 vs. TAIR (Arabidopsis)
Match: AT1G35210.1 (unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 8.300e-7
Identity = 45/125 (36.00%), Postives = 65/125 (52.00%), Query Frame = 1 

		  

Query: 12  CKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSSSSSSSLSST 71
           CKKHPKHRQSPGVCSLCL+E+LS      ++      R R+R    +SSS++SS S   +
Sbjct: 31  CKKHPKHRQSPGVCSLCLNERLSLFIKAASSR-----RPRSRQILSTSSSTTSSLSSDGS 90

Query: 72  NDSSAAASPLHDGGGSSTARHRRIVSDVRTKEGSSSSSLLFFSKSKSMAAHVGKGKLLLR 131
           +  S+  SP+ D         RR    +    G     + + +KS+S+A  V   K   +
Sbjct: 91  SSVSSCPSPIVD---------RRRYLLMSGGSGRGEKVISWMTKSRSVAYKVDDEKRRKK 141

Query: 132 SSKDN 137
            +K N
Sbjct: 151 KTKTN 141
[Close]
BLAST of Spo23770.1 vs. TAIR (Arabidopsis)
Match: AT1G72240.1 (unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 8.300e-7
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1 

		  

Query: 12 CKKHPKHRQSPGVCSLCLSEKLSKVSTTTTAARSAIIRARARVYYQSSSSSSSSSSLSST 71
          CKKH KHRQSPG+CSLCL+E+LSK+S          +         S+SSSSS SS  S+
Sbjct: 24 CKKHTKHRQSPGICSLCLTERLSKLSLEYYDYTKKAVETATYCGSTSTSSSSSVSSCYSS 83

Query: 72 NDSSAAASPL 82
          +  S+ +SPL
Sbjct: 84 SSVSSCSSPL 93
The following BLAST results are available for this feature:
BLAST of Spo23770.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902193083|gb|KNA12195.1|6.4e-94100.hypothetical protein SOVF_1280... [more]
gi|731313112|ref|XP_010678096.1|6.5e-3054.8PREDICTED: uncharacterized pro... [more]
gi|729440053|ref|XP_010521295.1|1.3e-649.0PREDICTED: uncharacterized pro... [more]
gi|976913471|gb|KVH99728.1|2.3e-650.0Uncharacterized protein family... [more]
gi|697129280|ref|XP_009618697.1|2.3e-645.7PREDICTED: uncharacterized pro... [more]
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BLAST of Spo23770.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QY68_SPIOL4.5e-94100.Uncharacterized protein OS=Spi... [more]
A0A0J8D6F8_BETVU4.6e-3054.8Uncharacterized protein OS=Bet... [more]
A0A103XZF9_CYNCS1.6e-650.0Uncharacterized protein family... [more]
A0A0D2TST8_GOSRA4.6e-641.0Uncharacterized protein OS=Gos... [more]
A0A061FFT3_THECC6.0e-640.0Uncharacterized protein OS=The... [more]
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BLAST of Spo23770.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23770.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G22470.12.8e-748.1unknown protein[more]
AT1G35210.18.3e-736.0unknown protein[more]
AT1G72240.18.3e-748.5unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34046FAMILY NOT NAMEDcoord: 12..174
score: 2.3
NoneNo IPR availablePANTHERPTHR34046:SF3SUBFAMILY NOT NAMEDcoord: 12..174
score: 2.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0031347 regulation of defense response
biological_process GO:0030001 metal ion transport
biological_process GO:0009693 ethylene biosynthetic process
biological_process GO:0010029 regulation of seed germination
biological_process GO:0048510 regulation of timing of transition from vegetative to reproductive phase
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0014070 response to organic cyclic compound
biological_process GO:0033554 cellular response to stress
biological_process GO:0007165 signal transduction
biological_process GO:0051707 response to other organism
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006073 cellular glucan metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0002376 immune system process
biological_process GO:1901701 cellular response to oxygen-containing compound
biological_process GO:0071229 cellular response to acid chemical
biological_process GO:0044237 cellular metabolic process
biological_process GO:0065007 biological regulation
biological_process GO:0009725 response to hormone
biological_process GO:0009743 response to carbohydrate
biological_process GO:0001101 response to acid chemical
biological_process GO:0051179 localization
biological_process GO:0016567 protein ubiquitination
biological_process GO:0045087 innate immune response
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0071310 cellular response to organic substance
biological_process GO:0042538 hyperosmotic salinity response
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0006857 oligopeptide transport
biological_process GO:0016310 phosphorylation
biological_process GO:0009741 response to brassinosteroid
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0006810 transport
biological_process GO:0009966 regulation of signal transduction
biological_process GO:0052542 defense response by callose deposition
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0010200 response to chitin
biological_process GO:0009620 response to fungus
biological_process GO:0009414 response to water deprivation
biological_process GO:0009611 response to wounding
biological_process GO:0009863 salicylic acid mediated signaling pathway
biological_process GO:0071555 cell wall organization
biological_process GO:0006468 protein phosphorylation
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0048046 apoplast
cellular_component GO:0005618 cell wall
cellular_component GO:0016020 membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0009505 plant-type cell wall
cellular_component GO:0017177 glucosidase II complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0000785 chromatin
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005834 heterotrimeric G-protein complex
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0016762 xyloglucan:xyloglucosyl transferase activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0031683 G-protein beta/gamma-subunit complex binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0019001 guanyl nucleotide binding
molecular_function GO:0043167 ion binding
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004575 sucrose alpha-glucosidase activity
molecular_function GO:0046872 metal ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo054640.79Barchart | Table
Spo253500.79Barchart | Table
Spo091860.77Barchart | Table
Spo198880.77Barchart | Table
Spo127120.77Barchart | Table
Spo087690.77Barchart | Table
Spo230360.76Barchart | Table
Spo158660.75Barchart | Table
Spo215090.74Barchart | Table
Spo238420.74Barchart | Table
Spo006110.74Barchart | Table
Spo048720.73Barchart | Table
Spo198680.73Barchart | Table
Spo191710.73Barchart | Table
Spo050460.72Barchart | Table
Spo238430.72Barchart | Table
Spo108260.72Barchart | Table
Spo149020.72Barchart | Table
Spo271650.71Barchart | Table
Spo115120.71Barchart | Table
Spo119750.71Barchart | Table
Spo165870.71Barchart | Table
Spo177250.71Barchart | Table
Spo243050.71Barchart | Table
Spo179750.70Barchart | Table
Spo058420.70Barchart | Table
Spo220330.70Barchart | Table
Spo104850.69Barchart | Table
Spo146820.69Barchart | Table
Spo084190.69Barchart | Table
Spo135720.69Barchart | Table
Spo096360.69Barchart | Table
Spo041290.68Barchart | Table
Spo035580.68Barchart | Table
Spo096350.68Barchart | Table
Spo077840.68Barchart | Table
Spo268100.68Barchart | Table
Spo111860.68Barchart | Table
Spo063720.68Barchart | Table
Spo117250.68Barchart | Table
Spo041300.68Barchart | Table
Spo221640.68Barchart | Table
Spo024810.67Barchart | Table
Spo020910.67Barchart | Table
Spo268310.67Barchart | Table
Spo093460.67Barchart | Table
Spo200940.67Barchart | Table
Spo043790.66Barchart | Table
Spo117760.66Barchart | Table
Spo247690.66Barchart | Table
Spo207290.66Barchart | Table
Spo217850.66Barchart | Table
Spo028240.66Barchart | Table
Spo178800.65Barchart | Table
Spo095750.65Barchart | Table
Spo166400.65Barchart | Table