Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACCAGATGCTCATCATCATCGTCGTTTCAACTTCCAAGGAGAGAGAGAGAGATGGATTTAGCAAGCAAAGCGATGAACATAGTGAACAAATTGGTAAACAGCAACACATTCGTCAACATATGCTTAGTGGGTTCATTCACAGCTCTTGGAATCAGATCATTGAATCAAGAAAACCTAATTGCAGCCCTTGAATCAGAGAGACAAACTCTTTCCAACACCAACAAAGCTATGAAGAAATCAATTTGGGATTGGAAACAGAAGCTTTACGCTGAAGCTTCTTCCTCTGAAACCGCCATTGTTCCTCTTTCTCGGCTTAAAGCCATCTATGGCGAAGTTGTCACTGCCCCTTCTGGTAATTCCAGTCTTTTTTAATTTTAATTTTCTGGATTTTATTGTTTTTTTTTGCTGTGTTGGGTTGATTTGTTTGTTTGTTGGGGAATTGTGACTATTTGAAGTTGGGGTTTTGTGTGGATTGTGAAAGGGTTTATGGTATTTTTGTAGAATTTGTGAAAATGGAGATTTTTTGCGGAATCAAAAGATTGAAGTTGTTTGATCTTGTCAAGGGCTAGTAGCTGGATATTATTCTGTGTATTGTGTTGATTGAATTTTGAAAATTGAGAATGTTGAGGATCATGATTGTACTTTTTAGGGGAGATGGCGAGGCGAAGCGTTGATTATTGAGAAAAGTAGTGAGTAATGATGTAGCTGGTTTCCGAGTGGAGCTGTTAAATTAACTGTTGAACAAAAAAAAATGTTGGCTTTGCGCTCTATGCCTGCTGCTAGGTGTTACATTGGACCATGTAATAAGCCTCGAAACGATTTCTAGGGTTTTCGTGTGAAAAGGGGTGAGAATTTTGAATAATTTCTGAAATGAACTTAGATGTGCAGCCCGATTTTTAGGGGAGATGGCGAGGCAAAGGCTTGATTATTGAGTAATTTATTGAGTAAGCTAATGACTAATGATGTAGCTAGTTTCCGAGTGGAGCTGTTAAATTAACTGTTGAACAAAAATATGTTGGCTTTGAGCTCTATGCCTTCTGCTAGGTGTTATATTGGAGCATGTAAGTAGGCCTCAAAGGATTTCTAGGGTTTTCGTGTGAAAAAGGGGTGAGAATTCCAAATTAATTTCTGAAATGAACTTAGATGTGCAACCCGATTTAAGAGCTAACCTGATCAAATTCAACTCAAGTATTGATCAATAAAGCGTAATAGTCACTAACATAGTTTAGAAAGGAGGGTATTCCATGAGACTTTCTTACAGATGGAGACAAGAGACAGATCTTTCTTTGCATATCACCCAAACATAATGACGGTTTTATGGCTCAGCATATAACCAGAGTCAACTCCGTAGAGATGTACATCTTCATGTTTACACTAAGCTTATTTGCTAGAACAGAATGACCATGGCTGTGAGCATGGCCAGGTTGATCTGGTTTTTGTCCAACTTACTTCAAAATGCTCTACAGGGTCAGCTGTGGTATGCTAGAGTATGTCATATTTGGCCTATCCCGCCGTTTTCAGGCTTTCAGCCACTTGCAAGTTGCAAGTCTTCTTGTAGCCTTGATTGTCCGCCAAACCACTCAGCTGCCAGCCTGCCATATTCATAGCTACTAGGCTCATTTTCTAGGATGGTTGAGTCAAACTCCCCTAGGAGTTGCCTTTAGACACACCGCACTAGCCTAATAAACTATCCATGCCCACAAATGAATTTTCTTAAGTCTCCTCAAAAACTTCTTCACCATCCAAAAAAGATACTCACATTTATATATTTTGGAATTTGGAGACATATGATAATGTAAAGTTTATAGATCTGTGTTCTGATTCTGAAATTCTGTGAGGGACTAGATACTGCTGGAAAGGGGCTATAATGGTTTATAAATGATTCACCCTCCCGTTTGAACAACATGAATGAAAAGGCATCTAATATACACAACAGCTTCTTAGGATTTATTATGTCTCCTCAATGTGCTATGTGGTTCAGTCTACAATGTTCTACGGCAGTGGTGAGAAATATCCATTTTCACTTATTTATCCGCTTTCCGCTACAATGGGATAGGACCCAGCTTGTTTTCTTGGAAGTTTGTTTATCAGAATAGGCTTTTTTTTTTGTTGTGGCTTGAATTAGTGCATGCGCTGCATGGCAGTTGAAGGATTACTATATCCTGATTAGTGGATTCTAATGAAAGAATATTTGAACTCTACCCTAATACTCCGTATTTACTAGTGGATAAAATATAAATTGTTTTAATGTGAAATCTCAAGCATGGGAATACCAGATCACAATCCTATCATTTGGAGGAAGAGGGATACTTAAAGGGTCTGTCATCGAAAAATCTATAGCATGATGACTTTCGTTACGTATGACCTGAAGATTGAAGTTTCTAAAGTTTGTTTACAGTTTGGGGCATACAATATCAGTGGTTCACTAGTTCTACACTTCTACGTACATATTGACAACTAGAATTCTATTTGTATGAATTCAACTCCGCTGAAATAGGCTCTATCTGAATCAGAATTTTAGTGCAACATACTGAATAGAATTTTAATGCATTGTGTCAACATACTGAATCATAACTTTCAAGCTTAGTTATAACATACTGAATCAGAATTTTAGTGCATTGTGTTCCACATTTTAATTCTTGTGAACTAGCAGAGAATTCACTAGCTTGTTGACCGGTAGATATTCCTTTATTGTTTACCTCCGAAGTACGATGGTGCAGCATATTGCTCTTCCTTTTTAAGCCAAGAATTCGTTGAACTTCCACAACTTTATCGAAGATGGAATTTGATTTTATCACATCCAGAAAACAACTACTCTAGGTCTCTAGGTTACATGAAACTGACCCCATTTTGGACCACAGGCACGAGTCTTATGATACACTAGGGTAATAACTTAGAGAATTGATAACTTGAGAATGTTTGAGGAGAGCAAAAGGTTTTAAATGATAAGATCTCCCCTTGTTCAAGTTTATTGATTCGGGTATTACTTTGGCATCTAATATTTAATGTTTGCTGAACTAATTGTGTAGTTTCCATGGGTTCTAGGCTGCTAGTCCGTATATTGTCCTGTTTTAATTCTAAATTAAGAAGTAATATGTCCTTGAATGATTTTCTACATAATATTGGTGATAGATTTCACATTGTTCTTGTTTCATTGGTTATGCGGGAAGCGTAGAGGTAAAATACAGATTATCTTTTGGGTTAAGAACTGGTGCTGTGGCCATTTTCTACTGGTCATTTATCTCACCCATTTCTTTTAACAAACCTTATAAGCATCTGCAAGAAAGGTCATTTTGTGAGTGCTTGGTGCAGAATCATGCTTTTGTGGTTGACCAAGCCCGCCAAGGCATTTGTTGACTCTTAAGGATAATTGACTAATTGCAAGGATTTATCCATCTAGTTTTATGTAATGTAATATGAAGTTACTACCGGATTTTAGAGCACTGAATTTAGAAATTCATAATATAAGGCCGAACAATTTTGCTGTCATGGAATATTTTGTATACAATGCGCTATGGTGGCACCTGAGTGGAATTGTTGTTAATAATAGTCCCTCTATCTCAGGCCTTGTTCTTTTTACCTGATCTGGTCTGATGGTGTGGTGTTGGTCCGGTCTCTGTGAGTGTTTTTTGTTGTTTCTGATCTGATCTGATCTGATATGATTTTTCTGGTCTGATTTAATAAATAATAATAATAATGTGAAGAGAACAAAACCTAAATCTTGCGAGGCACAATGACCCAAGTTCATTGATGCACATTTTTAACAAGATGAACTACGAAAACAATAATGAGCCATTTCTTGATTTCTGCACTTCTGTATGTTTCGTTTCGTTCCCCTGTTAAAATTTCTGCTTATTTGATTTTGAATTGACTTCTTTCATCCAAACCTTTGCAGATGAGGAGAAAACTGCAGAATCATCGACTAAGCTTCTTATTTGATGTTGTCTTTGTAATGACAAATGCTACCTTAGTTTCAGGAGCGACATTTTGTTCTATAGAAGATTAGATATAGAAATCCTGTAATTGGTGCTGCCATGAATTTCTGAAGGGCTTGATACTTTGATATGAAAGGAAACTTGTATGCCAAAATAAGGAAATTTTGACAGATTACAATGGTGTTGTTGCCACAAGCTGGGCTAGACATGATCCTCAGCCATAAACAAACAAATAATTCTCTATATAAATCCAATTTAAGCTAATTACCGAAACCGATACGAGACCAA ACCAGATGCTCATCATCATCGTCGTTTCAACTTCCAAGGAGAGAGAGAGAGATGGATTTAGCAAGCAAAGCGATGAACATAGTGAACAAATTGGTAAACAGCAACACATTCGTCAACATATGCTTAGTGGGTTCATTCACAGCTCTTGGAATCAGATCATTGAATCAAGAAAACCTAATTGCAGCCCTTGAATCAGAGAGACAAACTCTTTCCAACACCAACAAAGCTATGAAGAAATCAATTTGGGATTGGAAACAGAAGCTTTACGCTGAAGCTTCTTCCTCTGAAACCGCCATTGTTCCTCTTTCTCGGCTTAAAGCCATCTATGGCGAAGTTGTCACTGCCCCTTCTGATGAGGAGAAAACTGCAGAATCATCGACTAAGCTTCTTATTTGATGTTGTCTTTGTAATGACAAATGCTACCTTAGTTTCAGGAGCGACATTTTGTTCTATAGAAGATTAGATATAGAAATCCTGTAATTGGTGCTGCCATGAATTTCTGAAGGGCTTGATACTTTGATATGAAAGGAAACTTGTATGCCAAAATAAGGAAATTTTGACAGATTACAATGGTGTTGTTGCCACAAGCTGGGCTAGACATGATCCTCAGCCATAAACAAACAAATAATTCTCTATATAAATCCAATTTAAGCTAATTACCGAAACCGATACGAGACCAA ATGGATTTAGCAAGCAAAGCGATGAACATAGTGAACAAATTGGTAAACAGCAACACATTCGTCAACATATGCTTAGTGGGTTCATTCACAGCTCTTGGAATCAGATCATTGAATCAAGAAAACCTAATTGCAGCCCTTGAATCAGAGAGACAAACTCTTTCCAACACCAACAAAGCTATGAAGAAATCAATTTGGGATTGGAAACAGAAGCTTTACGCTGAAGCTTCTTCCTCTGAAACCGCCATTGTTCCTCTTTCTCGGCTTAAAGCCATCTATGGCGAAGTTGTCACTGCCCCTTCTGATGAGGAGAAAACTGCAGAATCATCGACTAAGCTTCTTATTTGA MDLASKAMNIVNKLVNSNTFVNICLVGSFTALGIRSLNQENLIAALESERQTLSNTNKAMKKSIWDWKQKLYAEASSSETAIVPLSRLKAIYGEVVTAPSDEEKTAESSTKLLI Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo23709.1 vs. NCBI nr
Match: gi|902177470|gb|KNA08963.1| (hypothetical protein SOVF_157960 [Spinacia oleracea]) HSP 1 Score: 213.8 bits (543), Expect = 1.600e-52 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
BLAST of Spo23709.1 vs. NCBI nr
Match: gi|902231710|gb|KNA22364.1| (hypothetical protein SOVF_034500 [Spinacia oleracea]) HSP 1 Score: 176.0 bits (445), Expect = 3.700e-41 Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 1
BLAST of Spo23709.1 vs. NCBI nr
Match: gi|731361524|ref|XP_010692400.1| (PREDICTED: uncharacterized protein LOC104905519 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 157.9 bits (398), Expect = 1.000e-35 Identity = 81/116 (69.83%), Postives = 103/116 (88.79%), Query Frame = 1
BLAST of Spo23709.1 vs. NCBI nr
Match: gi|1009136717|ref|XP_015885674.1| (PREDICTED: uncharacterized protein LOC107421052 [Ziziphus jujuba]) HSP 1 Score: 117.1 bits (292), Expect = 2.000e-23 Identity = 58/101 (57.43%), Postives = 81/101 (80.20%), Query Frame = 1
BLAST of Spo23709.1 vs. NCBI nr
Match: gi|641861979|gb|KDO80666.1| (hypothetical protein CISIN_1g033431mg [Citrus sinensis]) HSP 1 Score: 115.5 bits (288), Expect = 5.900e-23 Identity = 65/119 (54.62%), Postives = 87/119 (73.11%), Query Frame = 1
BLAST of Spo23709.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQJ7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157960 PE=4 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 1.100e-52 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
BLAST of Spo23709.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTW7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_034500 PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 2.600e-41 Identity = 92/100 (92.00%), Postives = 96/100 (96.00%), Query Frame = 1
BLAST of Spo23709.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BGV5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g020310 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 7.200e-36 Identity = 81/116 (69.83%), Postives = 103/116 (88.79%), Query Frame = 1
BLAST of Spo23709.1 vs. UniProtKB/TrEMBL
Match: A0A067GZE9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033431mg PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 4.100e-23 Identity = 65/119 (54.62%), Postives = 87/119 (73.11%), Query Frame = 1
BLAST of Spo23709.1 vs. UniProtKB/TrEMBL
Match: A0A067GPS0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033431mg PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 7.000e-23 Identity = 63/120 (52.50%), Postives = 86/120 (71.67%), Query Frame = 1
BLAST of Spo23709.1 vs. TAIR (Arabidopsis)
Match: AT1G48200.1 (unknown protein) HSP 1 Score: 94.4 bits (233), Expect = 5.000e-20 Identity = 48/111 (43.24%), Postives = 76/111 (68.47%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23709.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo23709.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo23709.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo23709.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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