Spo23610 (gene)

Overview
NameSpo23610
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionTransmembrane protein 50a, putative
Locationchr2 : 51398697 .. 51404102 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCGACCACTTGATCTTGAAGGTGATAAGTCGCAACAAATATCTTTTGAATTCCATGCATGTCTTATATTTTTTCCCCTTATAAGCATCACAATCTTACTCTTTACCGACTCACGTTGCGTTTAGCCGTTTAGGGGTCACAAAATGACACTGAAGTAAAAGTTCTCAACAACACCTTATTCTTAAATCTTAATAAGCCTGTTGACAACAAGTAGAAGAAAAACCCATCAATCATTCCCATTTCCCAGCTTCCACTACACGTAAAACCAAACAAAAGAATGGATATACCGGAGCTACTTGCAATATTCGGGCCGGGTATCGCCGGCGCCGTATTCGGGGCGGGCTGGTGGTTTTGGGTTGACGCCGTGGTTTGCAGCTCCATCGTCGTCTCTTTCGTCCACTATCTCCCTGGTATCTCTCTCTCTTTCTTTTCTCTCTCCTCAATCTTTCTCCCCCCAAAACTCACTGATTTTAGGGTTTCTGCTTTGGTAATGTTTTTGATTAGGAATATTTGCATCTTTGGCGGCTTTGATGTTCAATTGTGTGAGGAAAGAAGACATCGATTACTCCCCTTACGATGATGGGGAGTGGAGGTATTTTTCCTTTTCTTTGAATCAAACTTCTGACTTTTTGATTTTCTATTGCAATTCGTAGTGTTTTTAGTGTTGTGTCTAATTTGATTGCTCAATGCCATAATTTTTTTATGCTGAAGTGTTTGATTTGATGATGATGATCAGAGATTTTGGCTTTGATGTTATTCTCATCATCTGATCATATATTAGAGTGGTTTATTGTAATCGTATGATCTTATCTGCATATATTAGAGTGTTTTATTGTAATCATATGATCTTATCTACATATTGGTTCTGCTTGAAAAACAGATACTTTTTTGTTTCACTCTTCTTTATCTTATCATCATTTTCGAAATTCTCTGATCACAGATACGTCCCTCGTGGATTGTGGTCACAGTAGGGAAATTTGATTAATTTTACTTTGTTGGCAAATGAGTACTTTGTTTTATGGAGTTGTGGGTTGGTTTAGGTCTCCTGTAGAAAAGATTGTTGGATGGGTATCGTCGATGATGGTAGAGTTATGTTTATAGATACTGAAACGTAGCTTGCAGCGAACTAGGATAATTACTTCTATGAGTAATCTTTTATAATTAATTGACATGGGATGGAAGTATGGAATTGAAGAGAAATGAATTGATGGGGTGGAAATGCTTGCTTATCTTATAGACTGGTAGCTATTAGCTAGACAGAATGTGGTAGAACTATTGGAATGTGTATTGCTGCTTGCATGTGAAATTTTGGATATCAACTCAGCTGCTACTGCTAGCCTATAACTATTTTAATATGCTTATATGTTCTTCTAAACGATATCGCAGATTGAAGCTCTGGCTTTTCCTTGCTTATGTCGTATCTTTTGTGTCACTTGCGGCATCAGTTGGGCTGCTTATACAAGATGCCATGTTGCCTTCTGGACCATCAACATGGACTGGGGTTGCGGGTGTCTTGCAGTGTGTATTTGTGCTGATTAGGTTGGTATTGTTTTTCTGACATTCAATTTACTTTCTTTTCTGTCAATTTTATTTGTATGCATTTGACACATTTTGATGCTCCATTTTGGCATTTTTTGAAGTATACATCTTCCTCGCACTGTTTTATACCCTTCCTCCCAAAGAAAATGCATAATTTGAAACTTGGGATTGCTTTCTTTGTTTTAGACTCATTATGTGGTTATAGAACTTGGATAACTGGTATGGAGGAAATGGTCATTAAACACATTCTAGCCCACTATGTTAACAAGATAAGAGCTGAGTGTCTGAGTGCTTCAAGTTTAGTTAAGAATGAGGTGCCTTGTCATCTACAACAAGGGAAAATAGTAAAATTGGAAAGTTTTGATTTTTTGGAAGTTAACTTTCAGTTAGTTTAAAATTATATAAAAGATCCATCAAGTTTGGATGATCCTTGACCTTTTAACTTCACTTCTATTTTTAATTTTGAGTGTGTGTGTTGGGAAAGGGGCCTTTAAGTTTGAACTTCACTTACGAATATGCTCTTGTGTTTCTAAGTTCAAAGAATCATCAAGTTTGGGTGATCCTTATATGGATGCACATGCACTTTCAGTCTTACAGACCTTTTAACTTCACTTCTTTTTGTTCTTGTTTTTTTGTTTTGTTTTTTGTGTGTCTAAGTTTGTTTATTTTCCCATGGCTGACTCTTGGTTTTACCTGAATCTAGTACCCGTAACTTGGTGCATAGCATTTGATAGTAGCATAAGAACCAAGATTCATTTCTCTTCTCAAATGTTACTCATGACCAAGAACCCCTTATAAACACCCGTTGAAGATCTCAGTTAAAGTTGCATGAATGCTTCCTAACTTCTTAGCAACATTGTGTTGTTATGTGAGTCATACGACTCGTGTGAAGGCCCCTTTAAGGGTATAAACCCTCTCATGTGATCTTTACTTTGGGTAATCTAAAGCATACTCATAGCAAATTAATGCCTACAAAATTGATTGCATTGGGTAAAATTCATAAGCCATGACTAAAATCATATGCCATGAACTAGTGGAATTCTATTTAACCATGGGAGGGTATTTTTCTTTTTCTTTGGGGGGGGGGGGGGTGGAGGGATTGAAGGGCAATCTCGAGTTGCTGATGTGATGATAGTGGACATGATCTAGTAGTGGTTTTAAGACCCACCTAATAACTCCTGTTAGAAGACCATGATGATTCCCAATAAAAATTGGATAGAAGTCGCGTTGACAGCGAAGAAGCTTCAGATGTTAACTCTTAGTGAACCTTGCCCCTGACAGACTCGTTACAAATTGATGTGCATGAGACACTTTTAGAGTTAGAGAAAACCTCAGTGTGACTTGGAGGGAATTATATATTTTATGAAGATCCCTAGACACTAGTCATAATATAATCTCCTAATGACGGCAGAAAATCTCAAGTGACTTGCTAGAATCATTCTAAAGGTGATATCCTCTAACAATGGCCCTAGATATAAATAGGAACATTTTCTTAATCTTTTTCTAATGGATAATAGGAAAGTCTTCTATCTATAAGTATTTGACCAATCATGCCAGATGTCAACATCCTAGAATGGAGCTTGTTTCAAATTGGTAAGTTAGACTGTAATAGGAGATGCTGAACTCAATAATTCCTAAGAAATTTCCATTTTGAAGGATATAACTTTTGTAGATCTATCTCGAGGCACTAGTAAAGGTTAATAGAATCTTTTGTCCATCAATAGGCAGGTCCTCCGTAGATGAACGTAGCCCATTACTGATCACTTTTCACCAAATTATAAGTCATATATGTAGACCTTTTTCGGGCACAGAATCTTCCATCGAAATTTGTGGCAAACTCTCTTGTGCCATGGTTTCTTAAGTGGTTAATAATGACCATTGGTTGCTTAAGTGGTTAATGATGACCCATGGCTGCTTAAGTGGTTGATAATGACCATTGTTTTCATAAAATGTTTTAGGACCACTGTTAGGTCTAAATGAAGTTTGTAAGAAAGCATCCTTAGATCTAACAGTTGCTACGAATCAAAATTATGGAGAGGGGCACTTTAGGTAGTATCTTAAGTTAGTTATGGGTAGCTTGGGGAATAACTTAGGGAGCTAGCTAGGGAAAGGAGTGTTATATACAGAGCATATTAGAGTTAGGGAAAGGCATGTTTGATTAGAGTATTTCGGGTTAGCTTAGTAAGCTAAATTGGGAGAGAATCCACCTCTCAAAAGTGGAATTGTCATTCACATTTGCTGTAACTTCCATCTTAATCAAATCATCATCTTCATCCAATTTTCTGACATTAATGATGCTCAAGCTATGTTAATTCATAGCAACAACCAATAGATTAATGATGCGAGATTGATGATTCTACCAACAACATTGAGCCCTCTCAATGCGAGATTGTTTGTTTCTTCCCACTTTTATTGTTTTTGGCTTTTCGTTCAACCTTCTAAATAAAATCACTCTTCTATAAAGACTAACATGAAAGGAGGGTATTTTTGGTGATGAAAAAGAAGTCAAAATATATAAAGCCTTTTGCGAAAATATTTCCCTTGTGCGTGCCTTTGCCTCATGACTCACACCTCGACACAGGAAACTTTTTGTGCCTCAGAGTACTCCATGCTTAGCCTTTCCCCATGGGACATTGCTTCCATTCTCTCAAACCAGAGAGTAATTTGAAACTACGAAAGTTTTTTCTTTTTCATTTTTTTGTTTTAGGTCAAGAAATCTCTCTTTGGAGTTTGGAGGAAAATAACATTCTTGCCATATTTCTTTTCACTGTACAAATTGAATTATTTTGGTTAACAATGAAACGAGTTGGCTTTATTGTCTACAATTAGGCGAAATACACGTTTTGTGAATGAACTATGAGAAATTGGATACTTTGTGCCATGTGGAAAGCCTCTACGCTTATAAGGTATTTTCAAGTAATAAATATTTAAGAACACAAATAAGATCCCATCCATTATACTTCATACTCCTCTGTATGATTTCCCTTGTAGGTCCTTTTTACTTTAGTCTATGATGCGTGCTTGTGTATTCTGGCTTCTGCCTGCTTGCTCTAGTAACTGCATGCATTGCCGCTCTGTTAACGTTCACGTTTCCTTTGTCCTGAGTCTATGACTCTCCTGAGACTTCTGATCTTTAAACCTTTGATTGTGTGGTTGAAATACAACTTTGGCGAATCAACAGTCGATATACTTTGTTTACTTTTATCATGCTTGCTCTGCCAAGGGTTTGTTTTGCACTTAGATATCTGCAGTCAATTACTGGGTTACTGGGTTACTGGGTATGTACAACCTATCAAGTCTTTTGTTTGCTCACAATTTGATACATTTTTTTTGTTTTGGTTTGATAGTGGGTTGATCTATTGGACTTCACATTCCGAGTAGCTGGCTACATATTGAAGGTGTTTGAGACTTGTACTTATTTTAACTCGAATGTGCAGTAAAATAGTAGTTCATCTTTGTGTAAATGTTTGTAATATGCAACTGGCTATGAGCAACTAAGACGAGCCTAACTTCAATTTCTGGAATCTCTTGGTTCTTATGCTGTGAGGTGGTGTTTGGTATAATTGTTGAGCATTTCTAGGCTTGGGAATACTACATATAATCTTAAACTTTTATTCTACATAATCTTGTCACTTAAAGCATTATCAAACATATCCGCTTATACTAACTCCGTTTCAAAATGATTTTTACATTTTCCATTGTAGTCTGTTTCATAATGTTCTTTGCATTGTATTTCATACTATTGTTTGACATGAAAATTTACTATTTTACCTTTGTTACTGCAACATTTCTTATACTTCATTCATTTTTTTGTTATACCCACACGCTTTTTGTAAATTTCTCTTATTTTATCCATATTTTATTAT

mRNA sequence

GCCCGACCACTTGATCTTGAAGGTGATAAGTCGCAACAAATATCTTTTGAATTCCATGCATGTCTTATATTTTTTCCCCTTATAAGCATCACAATCTTACTCTTTACCGACTCACGTTGCGTTTAGCCGTTTAGGGGTCACAAAATGACACTGAAGTAAAAGTTCTCAACAACACCTTATTCTTAAATCTTAATAAGCCTGTTGACAACAAGTAGAAGAAAAACCCATCAATCATTCCCATTTCCCAGCTTCCACTACACGTAAAACCAAACAAAAGAATGGATATACCGGAGCTACTTGCAATATTCGGGCCGGGTATCGCCGGCGCCGTATTCGGGGCGGGCTGGTGGTTTTGGGTTGACGCCGTGGTTTGCAGCTCCATCGTCGTCTCTTTCGTCCACTATCTCCCTGGAATATTTGCATCTTTGGCGGCTTTGATGTTCAATTGTGTGAGGAAAGAAGACATCGATTACTCCCCTTACGATGATGGGGAGTGGAGATTGAAGCTCTGGCTTTTCCTTGCTTATGTCGTATCTTTTGTGTCACTTGCGGCATCAGTTGGGCTGCTTATACAAGATGCCATGTTGCCTTCTGGACCATCAACATGGACTGGGGTTGCGGGTGTCTTGCAGTGTGTATTTGTGCTGATTAGTGGGTTGATCTATTGGACTTCACATTCCGAGTAGCTGGCTACATATTGAAGGTGTTTGAGACTTGTACTTATTTTAACTCGAATGTGCAGTAAAATAGTAGTTCATCTTTGTGTAAATGTTTGTAATATGCAACTGGCTATGAGCAACTAAGACGAGCCTAACTTCAATTTCTGGAATCTCTTGGTTCTTATGCTGTGAGGTGGTGTTTGGTATAATTGTTGAGCATTTCTAGGCTTGGGAATACTACATATAATCTTAAACTTTTATTCTACATAATCTTGTCACTTAAAGCATTATCAAACATATCCGCTTATACTAACTCCGTTTCAAAATGATTTTTACATTTTCCATTGTAGTCTGTTTCATAATGTTCTTTGCATTGTATTTCATACTATTGTTTGACATGAAAATTTACTATTTTACCTTTGTTACTGCAACATTTCTTATACTTCATTCATTTTTTTGTTATACCCACACGCTTTTTGTAAATTTCTCTTATTTTATCCATATTTTATTAT

Coding sequence (CDS)

ATGGATATACCGGAGCTACTTGCAATATTCGGGCCGGGTATCGCCGGCGCCGTATTCGGGGCGGGCTGGTGGTTTTGGGTTGACGCCGTGGTTTGCAGCTCCATCGTCGTCTCTTTCGTCCACTATCTCCCTGGAATATTTGCATCTTTGGCGGCTTTGATGTTCAATTGTGTGAGGAAAGAAGACATCGATTACTCCCCTTACGATGATGGGGAGTGGAGATTGAAGCTCTGGCTTTTCCTTGCTTATGTCGTATCTTTTGTGTCACTTGCGGCATCAGTTGGGCTGCTTATACAAGATGCCATGTTGCCTTCTGGACCATCAACATGGACTGGGGTTGCGGGTGTCTTGCAGTGTGTATTTGTGCTGATTAGTGGGTTGATCTATTGGACTTCACATTCCGAGTAG

Protein sequence

MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRKEDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCVFVLISGLIYWTSHSE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23610.1Spo23610.1mRNA


Homology
[Close]
BLAST of Spo23610.1 vs. NCBI nr
Match: gi|902195578|gb|KNA12878.1| (hypothetical protein SOVF_121180 [Spinacia oleracea])

HSP 1 Score: 280.4 bits (716), Expect = 1.600e-72
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 

		  

Query: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60
           MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK
Sbjct: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60

Query: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120
           EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV
Sbjct: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120

Query: 121 FVLISGLIYWTSHSE 136
           FVLISGLIYWTSHSE
Sbjct: 121 FVLISGLIYWTSHSE 135
[Close]
BLAST of Spo23610.1 vs. NCBI nr
Match: gi|731310686|ref|XP_010671732.1| (PREDICTED: transmembrane protein 50 homolog isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 265.8 bits (678), Expect = 4.200e-68
Identity = 123/135 (91.11%), Postives = 131/135 (97.04%), Query Frame = 1 

		  

Query: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60
           MDIPELLAIFGPG AGAVFGAGWWFWVDAVVCS++ VSFVHYLPGIFASL+ALMFNCVRK
Sbjct: 1   MDIPELLAIFGPGFAGAVFGAGWWFWVDAVVCSAVAVSFVHYLPGIFASLSALMFNCVRK 60

Query: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120
           EDIDYSPYD+GEWRLKLWLFLAYV+SFVSLAASVGLLIQDA++P+GPS WTG AGVLQCV
Sbjct: 61  EDIDYSPYDEGEWRLKLWLFLAYVISFVSLAASVGLLIQDALVPTGPSAWTGTAGVLQCV 120

Query: 121 FVLISGLIYWTSHSE 136
           FVLISGLIYWTSHSE
Sbjct: 121 FVLISGLIYWTSHSE 135
[Close]
BLAST of Spo23610.1 vs. NCBI nr
Match: gi|510937263|gb|AGN52920.1| (hypothetical protein [Silene latifolia])

HSP 1 Score: 261.9 bits (668), Expect = 6.100e-67
Identity = 121/135 (89.63%), Postives = 132/135 (97.78%), Query Frame = 1 

		  

Query: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60
           M+I ELLAIFGPGI+GAVFGAGWWFWVDAVVCS++ +SF+HYLPGIFASLAALMFNCVRK
Sbjct: 1   MEISELLAIFGPGISGAVFGAGWWFWVDAVVCSAVTISFLHYLPGIFASLAALMFNCVRK 60

Query: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120
           EDIDYSPYD+GEWRLKLWLF+AYVV+FVSLAASVGLLIQDA++PSGPSTWTGVAGVLQCV
Sbjct: 61  EDIDYSPYDEGEWRLKLWLFIAYVVAFVSLAASVGLLIQDALVPSGPSTWTGVAGVLQCV 120

Query: 121 FVLISGLIYWTSHSE 136
           FVLISGLIYWTSH E
Sbjct: 121 FVLISGLIYWTSHLE 135
[Close]
BLAST of Spo23610.1 vs. NCBI nr
Match: gi|697161168|ref|XP_009589362.1| (PREDICTED: transmembrane protein 50 homolog [Nicotiana tomentosiformis])

HSP 1 Score: 259.6 bits (662), Expect = 3.000e-66
Identity = 122/135 (90.37%), Postives = 129/135 (95.56%), Query Frame = 1 

		  

Query: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60
           MD PEL AIFGPG++GAVFGAGWWFWVDAVVCSS+ VSF+HYLPGIFASLAALMFNCVRK
Sbjct: 1   MDFPELWAIFGPGVSGAVFGAGWWFWVDAVVCSSVKVSFLHYLPGIFASLAALMFNCVRK 60

Query: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120
           EDIDYSPYD+GEWRLKLWLF+AYVVSFVSLAASVGLLIQDA+  SGPS WTGVAGVLQCV
Sbjct: 61  EDIDYSPYDEGEWRLKLWLFIAYVVSFVSLAASVGLLIQDALGKSGPSAWTGVAGVLQCV 120

Query: 121 FVLISGLIYWTSHSE 136
           FVLISGLIYWTSHSE
Sbjct: 121 FVLISGLIYWTSHSE 135
[Close]
BLAST of Spo23610.1 vs. NCBI nr
Match: gi|1000977990|ref|XP_015571620.1| (PREDICTED: transmembrane protein 50A [Ricinus communis])

HSP 1 Score: 257.7 bits (657), Expect = 1.100e-65
Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 1 

		  

Query: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60
           MD+PEL AIFGPG+AGAVFGAGWWFWVDAVVCS++ VSFVHYLPGIFAS+AALMFNCVRK
Sbjct: 1   MDLPELWAIFGPGVAGAVFGAGWWFWVDAVVCSAVKVSFVHYLPGIFASIAALMFNCVRK 60

Query: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120
           EDIDYSPY++GEWRLKLWLF AYVVSFVSLAASVGLLIQD+++ SGPS WTG AGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSLVKSGPSVWTGTAGVLQCV 120

Query: 121 FVLISGLIYWTSHSE 136
           FVLISGLIYWTSHSE
Sbjct: 121 FVLISGLIYWTSHSE 135
[Close]
BLAST of Spo23610.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R041_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_121180 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.100e-72
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1 

		  

Query: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60
           MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK
Sbjct: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60

Query: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120
           EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV
Sbjct: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120

Query: 121 FVLISGLIYWTSHSE 136
           FVLISGLIYWTSHSE
Sbjct: 121 FVLISGLIYWTSHSE 135
[Close]
BLAST of Spo23610.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D757_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g000430 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 2.900e-68
Identity = 123/135 (91.11%), Postives = 131/135 (97.04%), Query Frame = 1 

		  

Query: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60
           MDIPELLAIFGPG AGAVFGAGWWFWVDAVVCS++ VSFVHYLPGIFASL+ALMFNCVRK
Sbjct: 1   MDIPELLAIFGPGFAGAVFGAGWWFWVDAVVCSAVAVSFVHYLPGIFASLSALMFNCVRK 60

Query: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120
           EDIDYSPYD+GEWRLKLWLFLAYV+SFVSLAASVGLLIQDA++P+GPS WTG AGVLQCV
Sbjct: 61  EDIDYSPYDEGEWRLKLWLFLAYVISFVSLAASVGLLIQDALVPTGPSAWTGTAGVLQCV 120

Query: 121 FVLISGLIYWTSHSE 136
           FVLISGLIYWTSHSE
Sbjct: 121 FVLISGLIYWTSHSE 135
[Close]
BLAST of Spo23610.1 vs. UniProtKB/TrEMBL
Match: R9UE90_SILLA (Uncharacterized protein OS=Silene latifolia PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.200e-67
Identity = 121/135 (89.63%), Postives = 132/135 (97.78%), Query Frame = 1 

		  

Query: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60
           M+I ELLAIFGPGI+GAVFGAGWWFWVDAVVCS++ +SF+HYLPGIFASLAALMFNCVRK
Sbjct: 1   MEISELLAIFGPGISGAVFGAGWWFWVDAVVCSAVTISFLHYLPGIFASLAALMFNCVRK 60

Query: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120
           EDIDYSPYD+GEWRLKLWLF+AYVV+FVSLAASVGLLIQDA++PSGPSTWTGVAGVLQCV
Sbjct: 61  EDIDYSPYDEGEWRLKLWLFIAYVVAFVSLAASVGLLIQDALVPSGPSTWTGVAGVLQCV 120

Query: 121 FVLISGLIYWTSHSE 136
           FVLISGLIYWTSH E
Sbjct: 121 FVLISGLIYWTSHLE 135
[Close]
BLAST of Spo23610.1 vs. UniProtKB/TrEMBL
Match: M1CNS7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027793 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.000e-65
Identity = 121/135 (89.63%), Postives = 128/135 (94.81%), Query Frame = 1 

		  

Query: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60
           MD  EL AIFGPG+AGAVFGAGWWFWVDAVVCSS+ +SF+HYLPGIFASLAALMFNCVRK
Sbjct: 1   MDFSELWAIFGPGVAGAVFGAGWWFWVDAVVCSSVKISFLHYLPGIFASLAALMFNCVRK 60

Query: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120
           EDIDYSPYD+GEWRLKLWLF+AYVVSFVSLAASVGLLIQDA+  SGPS WTGVAGVLQCV
Sbjct: 61  EDIDYSPYDEGEWRLKLWLFIAYVVSFVSLAASVGLLIQDALGKSGPSAWTGVAGVLQCV 120

Query: 121 FVLISGLIYWTSHSE 136
           FVLISGLIYWTSHSE
Sbjct: 121 FVLISGLIYWTSHSE 135
[Close]
BLAST of Spo23610.1 vs. UniProtKB/TrEMBL
Match: A0A067GZQ4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032718mg PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.800e-65
Identity = 119/135 (88.15%), Postives = 129/135 (95.56%), Query Frame = 1 

		  

Query: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60
           MD+ EL AIFGPG+AGAVFGAGWWFW+DAVVCSS+ VSFVHYLPGIFASLAALMFNCVRK
Sbjct: 1   MDLAELWAIFGPGVAGAVFGAGWWFWIDAVVCSSVKVSFVHYLPGIFASLAALMFNCVRK 60

Query: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120
           EDIDYSPY++GEWRLKLWLFLAYVVSFVSLAASVGLLIQD+++ +GPS WTG AGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCV 120

Query: 121 FVLISGLIYWTSHSE 136
           FVLISGLIYWTSHSE
Sbjct: 121 FVLISGLIYWTSHSE 135
[Close]
BLAST of Spo23610.1 vs. TAIR (Arabidopsis)
Match: AT1G36980.1 (unknown protein)

HSP 1 Score: 250.0 bits (637), Expect = 8.400e-67
Identity = 116/135 (85.93%), Postives = 126/135 (93.33%), Query Frame = 1 

		  

Query: 1   MDIPELLAIFGPGIAGAVFGAGWWFWVDAVVCSSIVVSFVHYLPGIFASLAALMFNCVRK 60
           MD+ EL AIFGPG +GAVFG GWWFWVDAVVCSSI V FVHYLPGIFASL ALMFNCVRK
Sbjct: 1   MDLAELWAIFGPGFSGAVFGTGWWFWVDAVVCSSIQVPFVHYLPGIFASLGALMFNCVRK 60

Query: 61  EDIDYSPYDDGEWRLKLWLFLAYVVSFVSLAASVGLLIQDAMLPSGPSTWTGVAGVLQCV 120
           EDIDYSPYD+GEWRLKLWLF+AYVV+FVSLAASVGLLIQD+++ +GPSTWTGVAGV QCV
Sbjct: 61  EDIDYSPYDEGEWRLKLWLFIAYVVAFVSLAASVGLLIQDSVVKTGPSTWTGVAGVFQCV 120

Query: 121 FVLISGLIYWTSHSE 136
           FVLISGL+YWTSHSE
Sbjct: 121 FVLISGLMYWTSHSE 135
The following BLAST results are available for this feature:
BLAST of Spo23610.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902195578|gb|KNA12878.1|1.6e-72100.hypothetical protein SOVF_1211... [more]
gi|731310686|ref|XP_010671732.1|4.2e-6891.1PREDICTED: transmembrane prote... [more]
gi|510937263|gb|AGN52920.1|6.1e-6789.6hypothetical protein [Silene l... [more]
gi|697161168|ref|XP_009589362.1|3.0e-6690.3PREDICTED: transmembrane prote... [more]
gi|1000977990|ref|XP_015571620.1|1.1e-6588.1PREDICTED: transmembrane prote... [more]
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BLAST of Spo23610.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R041_SPIOL1.1e-72100.Uncharacterized protein OS=Spi... [more]
A0A0J8D757_BETVU2.9e-6891.1Uncharacterized protein OS=Bet... [more]
R9UE90_SILLA4.2e-6789.6Uncharacterized protein OS=Sil... [more]
M1CNS7_SOLTU1.0e-6589.6Uncharacterized protein OS=Sol... [more]
A0A067GZQ4_CITSI1.8e-6588.1Uncharacterized protein OS=Cit... [more]
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BLAST of Spo23610.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23610.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G36980.18.4e-6785.9unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007919Uncharacterised protein family UPF0220PANTHERPTHR13180SMALL MEMBRANE PROTEIN-RELATEDcoord: 8..135
score: 2.0
IPR007919Uncharacterised protein family UPF0220PFAMPF05255UPF0220coord: 13..133
score: 8.8
NoneNo IPR availablePANTHERPTHR13180:SF3SUBFAMILY NOT NAMEDcoord: 8..135
score: 2.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006366 transcription by RNA polymerase II
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006979 response to oxidative stress
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006212 uracil catabolic process
biological_process GO:0046786 viral replication complex formation and maintenance
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0043562 cellular response to nitrogen levels
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0009451 RNA modification
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0030001 metal ion transport
biological_process GO:0006464 cellular protein modification process
biological_process GO:0006508 proteolysis
biological_process GO:0016567 protein ubiquitination
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006506 GPI anchor biosynthetic process
biological_process GO:0072593 reactive oxygen species metabolic process
biological_process GO:0010133 proline catabolic process to glutamate
biological_process GO:0006561 proline biosynthetic process
biological_process GO:0006525 arginine metabolic process
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0030091 protein repair
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006572 tyrosine catabolic process
biological_process GO:0042207 styrene catabolic process
biological_process GO:1902000 homogentisate catabolic process
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0015940 pantothenate biosynthetic process
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0000303 response to superoxide
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0006566 threonine metabolic process
biological_process GO:0046653 tetrahydrofolate metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0043631 RNA polyadenylation
biological_process GO:0009863 salicylic acid mediated signaling pathway
biological_process GO:0006897 endocytosis
biological_process GO:0010119 regulation of stomatal movement
biological_process GO:0006334 nucleosome assembly
biological_process GO:0008219 cell death
biological_process GO:0006605 protein targeting
biological_process GO:0060003 copper ion export
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0006695 cholesterol biosynthetic process
biological_process GO:0006007 glucose catabolic process
biological_process GO:0009873 ethylene-activated signaling pathway
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005829 cytosol
cellular_component GO:0009506 plasmodesma
cellular_component GO:0009705 plant-type vacuole membrane
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0005768 endosome
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0000786 nucleosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005840 ribosome
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005730 nucleolus
cellular_component GO:0030176 integral component of endoplasmic reticulum membrane
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity
molecular_function GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0004652 polynucleotide adenylyltransferase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004620 phospholipase activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0008374 O-acyltransferase activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0047598 7-dehydrocholesterol reductase activity
molecular_function GO:0051920 peroxiredoxin activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008115 sarcosine oxidase activity
molecular_function GO:0043621 protein self-association
molecular_function GO:0004157 dihydropyrimidinase activity
molecular_function GO:0004334 fumarylacetoacetase activity
molecular_function GO:0008113 peptide-methionine (S)-S-oxide reductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0016773 phosphotransferase activity, alcohol group as acceptor
molecular_function GO:0009918 sterol delta7 reductase activity
molecular_function GO:0004601 peroxidase activity
molecular_function GO:0004008 copper-exporting ATPase activity
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo185750.74Barchart | Table
Spo106020.72Barchart | Table
Spo237510.71Barchart | Table
Spo120120.70Barchart | Table
Spo015780.69Barchart | Table
Spo048650.69Barchart | Table
Spo036180.68Barchart | Table
Spo036620.68Barchart | Table
Spo206360.68Barchart | Table
Spo156390.68Barchart | Table
Spo273620.68Barchart | Table
Spo132020.68Barchart | Table
Spo087720.68Barchart | Table
Spo092960.68Barchart | Table
Spo237160.68Barchart | Table
Spo234200.68Barchart | Table
Spo021070.68Barchart | Table
Spo026060.68Barchart | Table
Spo159510.67Barchart | Table
Spo061990.67Barchart | Table
Spo068160.67Barchart | Table
Spo121760.67Barchart | Table
Spo131840.67Barchart | Table
Spo169860.67Barchart | Table
Spo190890.67Barchart | Table
Spo206770.67Barchart | Table
Spo236640.67Barchart | Table
Spo256130.67Barchart | Table
Spo259640.67Barchart | Table
Spo180500.66Barchart | Table
Spo112130.66Barchart | Table
Spo112960.66Barchart | Table
Spo146870.66Barchart | Table
Spo092440.66Barchart | Table
Spo011840.66Barchart | Table
Spo122530.66Barchart | Table
Spo081180.66Barchart | Table
Spo144380.66Barchart | Table
Spo039050.66Barchart | Table
Spo262660.66Barchart | Table
Spo213510.66Barchart | Table
Spo008980.66Barchart | Table
Spo217840.66Barchart | Table
Spo231480.66Barchart | Table
Spo019290.66Barchart | Table
Spo246250.66Barchart | Table
Spo009360.65Barchart | Table
Spo053060.65Barchart | Table
Spo050290.65Barchart | Table
Spo247520.65Barchart | Table
Spo217430.65Barchart | Table
Spo009240.65Barchart | Table
Spo101560.65Barchart | Table
Spo117330.65Barchart | Table