Spo23596 (gene)

Overview
NameSpo23596
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRhamnogalacturonate lyase family protein
Locationchr2 : 52016081 .. 52017192 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGATGTGATGCACAAATGGGTGAGTTGATGGTGTATGAGCCTCCTCGAGATGGACCAACCTTGTGGGAAATTGGAATTCCTGATCGTACTGCAACCCTTGCTGAAGTACAGGTAAATTTTTAAGCTCCTATGAGACAACCATATGCATAAGACTGTTGATGTCAGCATTAAAGAAGATAACTATTTGACTAAAAACTATGACTATTTGATTGGAGTATAATTACTAACACAGAGTAGTAGAATATACCTATTTGATTAAAAAAATATACTTTAAATTATTGGGTAAGAAGTTGGTCTTATACATAAGACCGCCTTAACGCCTTACTCCATAAGTTTTTGTAAATGGTTTATCGCTTATCGGCCCCCCTTTTTGGTTTGTTATTGTGGTCAAAATCAAACATACGTTTTTGGTAAACTTTGACCAAAAATACGTTTTGTAAATGATTTTATTATTGTGGTTTGAAAATTGGGCTTTTAAGCCGAAAATGAAACTATAATTTAAATGATTATTTTTGCTTAAAAGACCGGTAAATGTTATATAGGTACGGATGAACGATCCAAATGCAAATCGGCCCATATTTACAACTGGACTAATAGGGAGGGATAACTCAATTGCAAGACATGGTAGCCATGGATTACACTGGCTTTATGACGCCGAGATACAGGGTTCGAAGTTCGTTAAAGGAGATAATACTCTATTTTTAACTCAACCAAGGAACCAAAGCCCATTCTAAGGAATATTGTATGATTATCTACGTCTTGAATGCCCTCCTACTCCAAATGCAATCTAAATAATACACAAGTTGTATTATTTTCCACTATTATCTTTCAGTTCCTTACCTTTTATTTCTCTCACTCCATATTCCGCAAACGGTTTCTTATAATGATTCATGTTAGCCGACCTTATCATTGTGGGACTGAGGCTTAATTGTTGTATTATCTTTCGGATCCTTATCACTTTGTATGACGAAGTACTTGTATTTAATTGATTTATTGTATATATTTTTTTTCATTTCCTTATTGTAAAGTATTAATTTGATATATCATATTGTTTTACTAGCTAACATAAATGAATAATAAAGTGAATGATTTAGTATGATACCCAA

mRNA sequence

ATGTCAGGATGTGATGCACAAATGGGTGAGTTGATGGTGTATGAGCCTCCTCGAGATGGACCAACCTTGTGGGAAATTGGAATTCCTGATCGTACTGCAACCCTTGCTGAAGTACAGGTACGGATGAACGATCCAAATGCAAATCGGCCCATATTTACAACTGGACTAATAGGGAGGGATAACTCAATTGCAAGACATGGTAGCCATGGATTACACTGGCTTTATGACGCCGAGATACAGGGTTCGAAGTTCGTTAAAGGAGATAATACTCTATTTTTAACTCAACCAAGGAACCAAAGCCCATTCTAAGGAATATTGTATGATTATCTACGTCTTGAATGCCCTCCTACTCCAAATGCAATCTAAATAATACACAAGTTGTATTATTTTCCACTATTATCTTTCAGTTCCTTACCTTTTATTTCTCTCACTCCATATTCCGCAAACGGTTTCTTATAATGATTCATGTTAGCCGACCTTATCATTGTGGGACTGAGGCTTAATTGTTGTATTATCTTTCGGATCCTTATCACTTTGTATGACGAAGTACTTGTATTTAATTGATTTATTGTATATATTTTTTTTCATTTCCTTATTGTAAAGTATTAATTTGATATATCATATTGTTTTACTAGCTAACATAAATGAATAATAAAGTGAATGATTTAGTATGATACCCAA

Coding sequence (CDS)

ATGTCAGGATGTGATGCACAAATGGGTGAGTTGATGGTGTATGAGCCTCCTCGAGATGGACCAACCTTGTGGGAAATTGGAATTCCTGATCGTACTGCAACCCTTGCTGAAGTACAGGTACGGATGAACGATCCAAATGCAAATCGGCCCATATTTACAACTGGACTAATAGGGAGGGATAACTCAATTGCAAGACATGGTAGCCATGGATTACACTGGCTTTATGACGCCGAGATACAGGGTTCGAAGTTCGTTAAAGGAGATAATACTCTATTTTTAACTCAACCAAGGAACCAAAGCCCATTCTAA

Protein sequence

MSGCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSKFVKGDNTLFLTQPRNQSPF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23596.1Spo23596.1mRNA


Homology
[Close]
BLAST of Spo23596.1 vs. NCBI nr
Match: gi|902237331|gb|KNA24756.1| (hypothetical protein SOVF_012930 [Spinacia oleracea])

HSP 1 Score: 216.1 bits (549), Expect = 2.900e-53
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 1 

		  

Query: 2   SGCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN 61
           +GCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN
Sbjct: 20  NGCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN 79

Query: 62  SIARHGSHGLHWLYDAEIQGSKFVKGDNTLFLTQPRNQSPF 103
           SIARHGSHGLHWLYDAEIQGSKFVKGD TLFLTQPRNQSPF
Sbjct: 80  SIARHGSHGLHWLYDAEIQGSKFVKGDKTLFLTQPRNQSPF 120
[Close]
BLAST of Spo23596.1 vs. NCBI nr
Match: gi|731311840|ref|XP_010671338.1| (PREDICTED: rhamnogalacturonate lyase B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 130.6 bits (327), Expect = 1.600e-27
Identity = 57/80 (71.25%), Postives = 71/80 (88.75%), Query Frame = 1 

		  

Query: 23  LWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGS 82
           ++++ +   +ATLAEVQVR+NDP ANRP+FTTGL+GRDNSIARHG HGL+WLY+ +IQGS
Sbjct: 561 IYKLRLAIASATLAEVQVRVNDPKANRPVFTTGLMGRDNSIARHGIHGLYWLYNVDIQGS 620

Query: 83  KFVKGDNTLFLTQPRNQSPF 103
           K V+GDN L+LTQPRNQSPF
Sbjct: 621 KLVQGDNVLYLTQPRNQSPF 640
[Close]
BLAST of Spo23596.1 vs. NCBI nr
Match: gi|698500308|ref|XP_009795926.1| (PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 124.8 bits (312), Expect = 8.700e-26
Identity = 55/79 (69.62%), Postives = 69/79 (87.34%), Query Frame = 1 

		  

Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ I   +ATLAEVQVR+NDPN NRP+F+TGLIGRDNSIARHG HGL+WLY+ +IQG+ 
Sbjct: 576 YKLRIAIASATLAEVQVRVNDPNTNRPLFSTGLIGRDNSIARHGIHGLYWLYNIDIQGNL 635

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT++L QPRNQSPF
Sbjct: 636 LVQGDNTIYLGQPRNQSPF 654
[Close]
BLAST of Spo23596.1 vs. NCBI nr
Match: gi|697172975|ref|XP_009595414.1| (PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 124.8 bits (312), Expect = 8.700e-26
Identity = 55/79 (69.62%), Postives = 69/79 (87.34%), Query Frame = 1 

		  

Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ I   +ATLAEVQVR+NDPN NRP+F+TGLIGRDNSIARHG HGL+WLY+ +IQG+ 
Sbjct: 577 YKLRIAIASATLAEVQVRVNDPNTNRPLFSTGLIGRDNSIARHGIHGLYWLYNIDIQGNL 636

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT++L QPRNQSPF
Sbjct: 637 LVQGDNTIYLGQPRNQSPF 655
[Close]
BLAST of Spo23596.1 vs. NCBI nr
Match: gi|697172977|ref|XP_009595415.1| (PREDICTED: probable rhamnogalacturonate lyase B isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 124.8 bits (312), Expect = 8.700e-26
Identity = 55/79 (69.62%), Postives = 69/79 (87.34%), Query Frame = 1 

		  

Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ I   +ATLAEVQVR+NDPN NRP+F+TGLIGRDNSIARHG HGL+WLY+ +IQG+ 
Sbjct: 544 YKLRIAIASATLAEVQVRVNDPNTNRPLFSTGLIGRDNSIARHGIHGLYWLYNIDIQGNL 603

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT++L QPRNQSPF
Sbjct: 604 LVQGDNTIYLGQPRNQSPF 622
[Close]
BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZ16_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_012930 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.000e-53
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 1 

		  

Query: 2   SGCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN 61
           +GCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN
Sbjct: 20  NGCDAQMGELMVYEPPRDGPTLWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDN 79

Query: 62  SIARHGSHGLHWLYDAEIQGSKFVKGDNTLFLTQPRNQSPF 103
           SIARHGSHGLHWLYDAEIQGSKFVKGD TLFLTQPRNQSPF
Sbjct: 80  SIARHGSHGLHWLYDAEIQGSKFVKGDKTLFLTQPRNQSPF 120
[Close]
BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D883_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g005360 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.100e-27
Identity = 57/80 (71.25%), Postives = 71/80 (88.75%), Query Frame = 1 

		  

Query: 23  LWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGS 82
           ++++ +   +ATLAEVQVR+NDP ANRP+FTTGL+GRDNSIARHG HGL+WLY+ +IQGS
Sbjct: 561 IYKLRLAIASATLAEVQVRVNDPKANRPVFTTGLMGRDNSIARHGIHGLYWLYNVDIQGS 620

Query: 83  KFVKGDNTLFLTQPRNQSPF 103
           K V+GDN L+LTQPRNQSPF
Sbjct: 621 KLVQGDNVLYLTQPRNQSPF 640
[Close]
BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Match: K4BUA4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.700e-25
Identity = 53/79 (67.09%), Postives = 69/79 (87.34%), Query Frame = 1 

		  

Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ I   +ATLAEVQVR+N+P+ NRP+F+TGLIGRDNSIARHG HGL+WLY+ +IQG+ 
Sbjct: 577 YKLRIAIASATLAEVQVRVNNPSTNRPVFSTGLIGRDNSIARHGIHGLYWLYNIDIQGNL 636

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT++L QPRNQSPF
Sbjct: 637 LVQGDNTIYLGQPRNQSPF 655
[Close]
BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Match: A0A022QSM2_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002710mg PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.700e-24
Identity = 50/80 (62.50%), Postives = 69/80 (86.25%), Query Frame = 1 

		  

Query: 23  LWEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGS 82
           ++++ +   +A+LAE+QVR+N+P ANRP+F++GLIGRDNSIARHG HGLHWLY+ EI G 
Sbjct: 548 IYKLRVALASASLAELQVRVNNPKANRPLFSSGLIGRDNSIARHGIHGLHWLYNIEINGD 607

Query: 83  KFVKGDNTLFLTQPRNQSPF 103
             V+GDNT++L+QPR+QSPF
Sbjct: 608 LLVEGDNTIYLSQPRSQSPF 627
[Close]
BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Match: K4BUA3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.700e-24
Identity = 51/79 (64.56%), Postives = 68/79 (86.08%), Query Frame = 1 

		  

Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ I   +ATLAEVQVR+N+P+ N+P+FTTGL GRDNSIARHG HGL+WLY+ +IQG+ 
Sbjct: 545 YKLRIAIASATLAEVQVRVNNPSTNQPLFTTGLFGRDNSIARHGIHGLYWLYNIDIQGNL 604

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT++L QPR+QSPF
Sbjct: 605 LVQGDNTIYLGQPRHQSPF 623
[Close]
BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Match: AT1G09890.1 (Rhamnogalacturonate lyase family protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.100e-23
Identity = 46/71 (64.79%), Postives = 63/71 (88.73%), Query Frame = 1 

		  

Query: 32  TATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSKFVKGDNTL 91
           +AT +E+Q+R+N+ NA+ P+FT+GLIGRDNSIARHG HGL+WL++ E+ GSK ++G+NTL
Sbjct: 534 SATFSELQIRVNNANAS-PMFTSGLIGRDNSIARHGIHGLYWLFNVEVAGSKLLEGENTL 593

Query: 92  FLTQPRNQSPF 103
           FLTQPR+ SPF
Sbjct: 594 FLTQPRSTSPF 603
[Close]
BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Match: AT1G09910.1 (Rhamnogalacturonate lyase family protein)

HSP 1 Score: 103.6 bits (257), Expect = 7.300e-23
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1 

		  

Query: 24  WEIGIPDRTATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSK 83
           +++ +   +ATLAE+Q+R+ND  A RP+FTTGLIGRDNSIARHG HG++ LY   I G++
Sbjct: 582 YKLRVAIASATLAELQIRINDAEAIRPLFTTGLIGRDNSIARHGIHGVYMLYAVNIPGNR 641

Query: 84  FVKGDNTLFLTQPRNQSPF 103
            V+GDNT+FL QPR   PF
Sbjct: 642 LVQGDNTIFLKQPRCNGPF 660
[Close]
BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Match: AT4G24430.1 (Rhamnogalacturonate lyase family protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.400e-18
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 1 

		  

Query: 24  WEIGIPDRTATLAEVQVRMNDPNANR--PIFTTGLIGRDNSIARHGSHGLHWLYDAEIQG 83
           ++I I   TA +AE+QVRMND +  +  PIFTTG+IG DN+IARHG HG++ LY+ ++  
Sbjct: 545 YKIRIALATANVAELQVRMNDDDTEKTTPIFTTGVIGHDNAIARHGIHGIYRLYNVDVPS 604

Query: 84  SKFVKGDNTLFLTQ 96
            K V+GDNTLFLTQ
Sbjct: 605 EKLVEGDNTLFLTQ 618
[Close]
BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Match: AT2G22620.1 (Rhamnogalacturonate lyase family protein)

HSP 1 Score: 85.1 bits (209), Expect = 2.700e-17
Identity = 38/71 (53.52%), Postives = 55/71 (77.46%), Query Frame = 1 

		  

Query: 32  TATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSKFVKGDNTL 91
           +A  +E+Q+R+NDP ++  IFTTG IG+DN+IARHG HGL+ LY  ++ G+    GDNT+
Sbjct: 592 SAADSELQIRINDPKSDA-IFTTGFIGKDNAIARHGIHGLYRLYSIDVAGNLLSVGDNTI 651

Query: 92  FLTQPRNQSPF 103
           FLTQ R+++PF
Sbjct: 652 FLTQTRSRTPF 661
[Close]
BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Match: AT1G09880.1 (Rhamnogalacturonate lyase family protein)

HSP 1 Score: 84.3 bits (207), Expect = 4.600e-17
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1 

		  

Query: 32  TATLAEVQVRMNDPNANRPIFTTGLIGRDNSIARHGSHGLHWLYDAEIQGSKFVKGDNTL 91
           T+ +AE+QVR+ND +A+ P+F T  IGRDN+IARHG HGL+WLY   +  +    G+NT+
Sbjct: 539 TSNVAELQVRVNDLSADPPLFRTEQIGRDNTIARHGIHGLYWLYSVNVPAASLHVGNNTI 598

Query: 92  FLTQPRNQSPF 103
           +LTQ    SPF
Sbjct: 599 YLTQALATSPF 609
The following BLAST results are available for this feature:
BLAST of Spo23596.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902237331|gb|KNA24756.1|2.9e-5398.0hypothetical protein SOVF_0129... [more]
gi|731311840|ref|XP_010671338.1|1.6e-2771.2PREDICTED: rhamnogalacturonate... [more]
gi|698500308|ref|XP_009795926.1|8.7e-2669.6PREDICTED: probable rhamnogala... [more]
gi|697172975|ref|XP_009595414.1|8.7e-2669.6PREDICTED: probable rhamnogala... [more]
gi|697172977|ref|XP_009595415.1|8.7e-2669.6PREDICTED: probable rhamnogala... [more]
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BLAST of Spo23596.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RZ16_SPIOL2.0e-5398.0Uncharacterized protein OS=Spi... [more]
A0A0J8D883_BETVU1.1e-2771.2Uncharacterized protein OS=Bet... [more]
K4BUA4_SOLLC6.7e-2567.0Uncharacterized protein OS=Sol... [more]
A0A022QSM2_ERYGU5.7e-2462.5Uncharacterized protein OS=Ery... [more]
K4BUA3_SOLLC9.7e-2464.5Uncharacterized protein OS=Sol... [more]
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BLAST of Spo23596.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23596.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G09890.11.1e-2364.7Rhamnogalacturonate lyase fami... [more]
AT1G09910.17.3e-2358.2Rhamnogalacturonate lyase fami... [more]
AT4G24430.11.4e-1856.7Rhamnogalacturonate lyase fami... [more]
AT2G22620.12.7e-1753.5Rhamnogalacturonate lyase fami... [more]
AT1G09880.14.6e-1752.1Rhamnogalacturonate lyase fami... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008979Galactose-binding domain-likeGENE3D2.60.120.260coord: 36..100
score: 8.5
IPR008979Galactose-binding domain-likeunknownSSF49785Galactose-binding domain-likecoord: 19..100
score: 2.13
NoneNo IPR availablePANTHERPTHR32018FAMILY NOT NAMEDcoord: 33..102
score: 4.5
NoneNo IPR availablePANTHERPTHR32018:SF8RHAMNOGALACTURONATE LYASE-LIKE PROTEINcoord: 33..102
score: 4.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0009813 flavonoid biosynthetic process
biological_process GO:0030259 lipid glycosylation
biological_process GO:0010214 seed coat development
biological_process GO:0009845 seed germination
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0007020 microtubule nucleation
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0016310 phosphorylation
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0006468 protein phosphorylation
biological_process GO:0050896 response to stimulus
biological_process GO:0009308 amine metabolic process
biological_process GO:0009904 chloroplast accumulation movement
biological_process GO:0007018 microtubule-based movement
biological_process GO:0009744 response to sucrose
biological_process GO:0043562 cellular response to nitrogen levels
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0006811 ion transport
biological_process GO:0008295 spermidine biosynthetic process
biological_process GO:0006597 spermine biosynthetic process
biological_process GO:0006557 S-adenosylmethioninamine biosynthetic process
biological_process GO:0000272 polysaccharide catabolic process
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0046950 cellular ketone body metabolic process
biological_process GO:0009644 response to high light intensity
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0006574 valine catabolic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006457 protein folding
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0009408 response to heat
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0006857 oligopeptide transport
biological_process GO:0006525 arginine metabolic process
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006554 lysine catabolic process
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006568 tryptophan metabolic process
biological_process GO:0046685 response to arsenic-containing substance
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0009688 abscisic acid biosynthetic process
biological_process GO:0019852 L-ascorbic acid metabolic process
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0016123 xanthophyll biosynthetic process
biological_process GO:0009966 regulation of signal transduction
biological_process GO:0006508 proteolysis
biological_process GO:0042545 cell wall modification
biological_process GO:0045490 pectin catabolic process
biological_process GO:0009411 response to UV
biological_process GO:0046251 limonene catabolic process
biological_process GO:0006547 histidine metabolic process
biological_process GO:0009753 response to jasmonic acid
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0046835 carbohydrate phosphorylation
biological_process GO:0006002 fructose 6-phosphate metabolic process
biological_process GO:0006000 fructose metabolic process
biological_process GO:0006012 galactose metabolic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006013 mannose metabolic process
biological_process GO:0043132 NAD transport
biological_process GO:0046486 glycerolipid metabolic process
biological_process GO:0018108 peptidyl-tyrosine phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0071805 potassium ion transmembrane transport
biological_process GO:0019260 1,2-dichloroethane catabolic process
biological_process GO:0019482 beta-alanine metabolic process
biological_process GO:0006699 bile acid biosynthetic process
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0006560 proline metabolic process
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0009805 coumarin biosynthetic process
biological_process GO:0009639 response to red or far red light
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0009658 chloroplast organization
biological_process GO:0005992 trehalose biosynthetic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0016311 dephosphorylation
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0042128 nitrate assimilation
biological_process GO:0055085 transmembrane transport
biological_process GO:0030029 actin filament-based process
biological_process GO:0050789 regulation of biological process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009791 post-embryonic development
biological_process GO:0008152 metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0030001 metal ion transport
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009651 response to salt stress
biological_process GO:0006810 transport
biological_process GO:0009414 response to water deprivation
biological_process GO:0009611 response to wounding
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009555 pollen development
biological_process GO:0009954 proximal/distal pattern formation
biological_process GO:0010227 floral organ abscission
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006096 glycolytic process
biological_process GO:0009553 embryo sac development
biological_process GO:0048439 flower morphogenesis
biological_process GO:0009637 response to blue light
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0016573 histone acetylation
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005618 cell wall
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0016602 CCAAT-binding factor complex
cellular_component GO:0005576 extracellular region
cellular_component GO:0005945 6-phosphofructokinase complex
cellular_component GO:0005871 kinesin complex
cellular_component GO:0005874 microtubule
cellular_component GO:0045298 tubulin complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0005739 mitochondrion
cellular_component GO:0048046 apoplast
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005634 nucleus
cellular_component GO:0016020 membrane
cellular_component GO:0005788 endoplasmic reticulum lumen
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0000123 histone acetyltransferase complex
cellular_component GO:0005622 intracellular
cellular_component GO:0016459 myosin complex
cellular_component GO:0030659 cytoplasmic vesicle membrane
cellular_component GO:0000785 chromatin
cellular_component GO:0005829 cytosol
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0015293 symporter activity
molecular_function GO:0045330 aspartyl esterase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004029 aldehyde dehydrogenase (NAD) activity
molecular_function GO:0008422 beta-glucosidase activity
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0000822 inositol hexakisphosphate binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0052663 antheraxanthin epoxidase activity
molecular_function GO:0052662 zeaxanthin epoxidase activity
molecular_function GO:0009540 zeaxanthin epoxidase [overall] activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0008886 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003712 transcription coregulator activity
molecular_function GO:0003777 microtubule motor activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004805 trehalose-phosphatase activity
molecular_function GO:0019706 protein-cysteine S-palmitoyltransferase activity
molecular_function GO:0003774 motor activity
molecular_function GO:0043531 ADP binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0016906 sterol 3-beta-glucosyltransferase activity
molecular_function GO:0008080 N-acetyltransferase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups
molecular_function GO:0004419 hydroxymethylglutaryl-CoA lyase activity
molecular_function GO:0016987 sigma factor activity
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0015297 antiporter activity
molecular_function GO:0016161 beta-amylase activity
molecular_function GO:0004014 adenosylmethionine decarboxylase activity
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0005200 structural constituent of cytoskeleton
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0005267 potassium channel activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0004715 non-membrane spanning protein tyrosine kinase activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0051724 NAD transmembrane transporter activity
molecular_function GO:0003872 6-phosphofructokinase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0051087 chaperone binding
molecular_function GO:0020037 heme binding
molecular_function GO:0016829 lyase activity
molecular_function GO:0004402 histone acetyltransferase activity
molecular_function GO:0008017 microtubule binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0008131 primary amine oxidase activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0030599 pectinesterase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo236480.77Barchart | Table
Spo216170.76Barchart | Table
Spo073010.75Barchart | Table
Spo149480.75Barchart | Table
Spo157070.73Barchart | Table
Spo130900.73Barchart | Table
Spo017960.73Barchart | Table
Spo011740.72Barchart | Table
Spo212470.72Barchart | Table
Spo098210.72Barchart | Table
Spo136470.72Barchart | Table
Spo254440.71Barchart | Table
Spo194870.71Barchart | Table
Spo167510.71Barchart | Table
Spo235950.71Barchart | Table
Spo152930.70Barchart | Table
Spo172380.70Barchart | Table
Spo041950.70Barchart | Table
Spo217910.70Barchart | Table
Spo239930.70Barchart | Table
Spo096380.70Barchart | Table
Spo263350.70Barchart | Table
Spo114410.70Barchart | Table
Spo128890.70Barchart | Table
Spo159900.70Barchart | Table
Spo244900.69Barchart | Table
Spo213640.69Barchart | Table
Spo047540.69Barchart | Table
Spo024330.69Barchart | Table
Spo067190.69Barchart | Table
Spo010870.69Barchart | Table
Spo157030.69Barchart | Table
Spo217490.69Barchart | Table
Spo213780.69Barchart | Table
Spo011170.69Barchart | Table
Spo200430.69Barchart | Table
Spo039750.68Barchart | Table
Spo013160.68Barchart | Table
Spo071090.68Barchart | Table
Spo238540.68Barchart | Table
Spo075260.68Barchart | Table
Spo015920.68Barchart | Table
Spo267390.68Barchart | Table
Spo085950.68Barchart | Table
Spo233370.68Barchart | Table
Spo157040.68Barchart | Table
Spo028330.68Barchart | Table
Spo128900.68Barchart | Table
Spo130300.68Barchart | Table
Spo038990.68Barchart | Table
Spo153080.68Barchart | Table
Spo242530.68Barchart | Table
Spo058980.68Barchart | Table
Spo060120.68Barchart | Table
Spo062400.67Barchart | Table
Spo079100.67Barchart | Table
Spo133330.67Barchart | Table
Spo015330.67Barchart | Table
Spo045920.67Barchart | Table
Spo065190.67Barchart | Table
Spo067740.67Barchart | Table
Spo186360.67Barchart | Table
Spo112010.67Barchart | Table
Spo256110.67Barchart | Table
Spo113980.67Barchart | Table
Spo184840.67Barchart | Table
Spo252620.67Barchart | Table
Spo017230.67Barchart | Table
Spo153070.67Barchart | Table
Spo172030.67Barchart | Table
Spo273410.67Barchart | Table
Spo241560.66Barchart | Table
Spo005610.66Barchart | Table
Spo055480.66Barchart | Table
Spo063300.66Barchart | Table
Spo068520.66Barchart | Table
Spo069750.66Barchart | Table
Spo069890.66Barchart | Table
Spo075940.66Barchart | Table
Spo078130.66Barchart | Table
Spo080480.66Barchart | Table
Spo083090.66Barchart | Table
Spo113680.66Barchart | Table
Spo116530.66Barchart | Table
Spo119410.66Barchart | Table
Spo122830.66Barchart | Table
Spo143460.66Barchart | Table
Spo144730.66Barchart | Table
Spo167890.66Barchart | Table
Spo205180.66Barchart | Table
Spo256890.66Barchart | Table
Spo153530.65Barchart | Table
Spo141330.65Barchart | Table
Spo101420.65Barchart | Table
Spo094120.65Barchart | Table
Spo041940.65Barchart | Table
Spo256480.65Barchart | Table
Spo256560.65Barchart | Table
Spo005000.65Barchart | Table
Spo017240.65Barchart | Table
Spo016070.65Barchart | Table
Spo273240.65Barchart | Table
Spo001350.65Barchart | Table