Spo23441 (gene)

Overview
NameSpo23441
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRmlC-like cupins superfamily protein
Locationchr3 : 24654610 .. 24654930 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATAGAGAAGCCTTTGGAAGAGCTATACAAGATAAGGGTAGAAAGAAAAGTATCTCCAGAACGTTTAAATGAGCTTGGAGTATCAAGATGGACAACATGGAAGACTGGAAAATGCAGATTGCCTTGGGACTGGCATGTGGATCAGCTGGTTTACATTGAAGAGGGAGAGGTTAGAGTTGTCCCTGAAGGTAGCAAACATTATATGAGTTTCAAAGCTGGTGATCTTGTGCGTTACCCTAAATGGTTCGAGGCTGACCTCTGGTTCAACGCTTTTTACCAAGAACGTTATAGCTTTCGAGCTTATGGTGATGATTAG

mRNA sequence

ATGAGGATAGAGAAGCCTTTGGAAGAGCTATACAAGATAAGGGTAGAAAGAAAAGTATCTCCAGAACGTTTAAATGAGCTTGGAGTATCAAGATGGACAACATGGAAGACTGGAAAATGCAGATTGCCTTGGGACTGGCATGTGGATCAGCTGGTTTACATTGAAGAGGGAGAGGTTAGAGTTGTCCCTGAAGGTAGCAAACATTATATGAGTTTCAAAGCTGGTGATCTTGTGCGTTACCCTAAATGGTTCGAGGCTGACCTCTGGTTCAACGCTTTTTACCAAGAACGTTATAGCTTTCGAGCTTATGGTGATGATTAG

Coding sequence (CDS)

ATGAGGATAGAGAAGCCTTTGGAAGAGCTATACAAGATAAGGGTAGAAAGAAAAGTATCTCCAGAACGTTTAAATGAGCTTGGAGTATCAAGATGGACAACATGGAAGACTGGAAAATGCAGATTGCCTTGGGACTGGCATGTGGATCAGCTGGTTTACATTGAAGAGGGAGAGGTTAGAGTTGTCCCTGAAGGTAGCAAACATTATATGAGTTTCAAAGCTGGTGATCTTGTGCGTTACCCTAAATGGTTCGAGGCTGACCTCTGGTTCAACGCTTTTTACCAAGAACGTTATAGCTTTCGAGCTTATGGTGATGATTAG

Protein sequence

MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23441.1Spo23441.1mRNA


Homology
[Close]
BLAST of Spo23441.1 vs. NCBI nr
Match: gi|902182919|gb|KNA10012.1| (hypothetical protein SOVF_148320 [Spinacia oleracea])

HSP 1 Score: 231.5 bits (589), Expect = 6.900e-58
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. NCBI nr
Match: gi|731366911|ref|XP_010695324.1| (PREDICTED: uncharacterized protein LOC104907987 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 215.7 bits (548), Expect = 3.900e-53
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY IRVERKVS ERL ELGVSRW+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 67  MRIEKPLEELYNIRVERKVSSERLKELGVSRWSMWKTGKCKLPWDWHVDQLVYIEEGEVR 126

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFN FYQERY+FRAYGDD
Sbjct: 127 VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNDFYQERYNFRAYGDD 172
[Close]
BLAST of Spo23441.1 vs. NCBI nr
Match: gi|870844892|gb|KMS97754.1| (hypothetical protein BVRB_5g124250 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 215.7 bits (548), Expect = 3.900e-53
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY IRVERKVS ERL ELGVSRW+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNIRVERKVSSERLKELGVSRWSMWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFN FYQERY+FRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNDFYQERYNFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. NCBI nr
Match: gi|661885047|emb|CDP11330.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 200.7 bits (509), Expect = 1.300e-48
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY +RVER VS ERL ELGVS+W+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNVRVERNVSKERLAELGVSKWSVWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ +M F AGDLVRYPKWFEADLWFN FYQERY FRAYGDD
Sbjct: 98  VVPEGSERFMRFVAGDLVRYPKWFEADLWFNDFYQERYKFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. NCBI nr
Match: gi|657975610|ref|XP_008379657.1| (PREDICTED: uncharacterized protein LOC103442632 [Malus domestica])

HSP 1 Score: 198.4 bits (503), Expect = 6.500e-48
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MR+EKPLEELY++RVERKVS ERL ELGVSRW+ WKTGKC+LPWDW VDQLVYIEEGEVR
Sbjct: 40  MRVEKPLEELYQVRVERKVSQERLAELGVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVR 99

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ YM F AGDLVRYPKW EADLWFN  YQERYSFRAYGDD
Sbjct: 100 VVPEGSQQYMQFVAGDLVRYPKWLEADLWFNGPYQERYSFRAYGDD 145
[Close]
BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRT7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_148320 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.800e-58
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8X6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g124250 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.700e-53
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY IRVERKVS ERL ELGVSRW+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNIRVERKVSSERLKELGVSRWSMWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFN FYQERY+FRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNDFYQERYNFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A068US20_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033517001 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 9.100e-49
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY +RVER VS ERL ELGVS+W+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNVRVERNVSKERLAELGVSKWSVWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ +M F AGDLVRYPKWFEADLWFN FYQERY FRAYGDD
Sbjct: 98  VVPEGSERFMRFVAGDLVRYPKWFEADLWFNDFYQERYKFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: M5WSX4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013006mg PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.000e-47
Identity = 91/106 (85.85%), Postives = 96/106 (90.57%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY++RVERKVSPERL ELGVSRW+ WKTGKC+LPWDW VDQLVYIEEGEVR
Sbjct: 40  MRIEKPLEELYQVRVERKVSPERLAELGVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVR 99

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSK YM F AGDLVRYPKW EADL+FN  YQERY FRAYGDD
Sbjct: 100 VVPEGSKQYMRFVAGDLVRYPKWLEADLFFNGPYQERYRFRAYGDD 145
[Close]
BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A059A0X3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00770 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.700e-47
Identity = 90/106 (84.91%), Postives = 95/106 (89.62%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY +RVERKVS ERL ELGVSRW+ WKTGKCRLPWDW VDQLVY+EEGEVR
Sbjct: 38  MRIEKPLEELYNVRVERKVSKERLEELGVSRWSVWKTGKCRLPWDWQVDQLVYVEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ YM F AGDLV YPKWFEADL+FN  YQERYSFRAYGDD
Sbjct: 98  VVPEGSERYMQFLAGDLVLYPKWFEADLYFNGPYQERYSFRAYGDD 143
[Close]
BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT2G32650.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 185.3 bits (469), Expect = 2.000e-47
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           M+ EKPLEELY ++VERKVS +RL ELGVSRW+ WKTGKC+LPWDW VDQLVYIE+GEVR
Sbjct: 34  MQTEKPLEELYNVKVERKVSQKRLEELGVSRWSVWKTGKCKLPWDWQVDQLVYIEQGEVR 93

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSK YM F AGDLVRYPKW EADL+FNA Y ERY F+AYGDD
Sbjct: 94  VVPEGSKRYMQFLAGDLVRYPKWLEADLFFNAPYIERYCFKAYGDD 139
[Close]
BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT2G32180.1 (plastid transcriptionally active 18)

HSP 1 Score: 185.3 bits (469), Expect = 2.000e-47
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 1 

		  

Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           M+ EKPLEELY ++VERKVS +RL ELGVSRW+ WKTGKC+LPWDW VDQLVYIE+GEVR
Sbjct: 34  MQTEKPLEELYNVKVERKVSQKRLEELGVSRWSVWKTGKCKLPWDWQVDQLVYIEQGEVR 93

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSK YM F AGDLVRYPKW EADL+FNA Y ERY F+AYGDD
Sbjct: 94  VVPEGSKRYMQFLAGDLVRYPKWLEADLFFNAPYIERYCFKAYGDD 139
[Close]
BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT4G10300.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 8.200e-9
Identity = 25/88 (28.41%), Postives = 41/88 (46.59%), Query Frame = 1 

		  

Query: 13  IRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEGSKHYMSF 72
           I +E+     +L +LGV  W  W     + PW +   +  Y+ +G+V+V P GS   +  
Sbjct: 46  ITIEKNPPESKLTQLGVRSWPKWGCPPSKFPWTYSAKETCYLLQGKVKVYPNGSDEGVEI 105

Query: 73  KAGDLVRYPKWFEADLWFNAFYQERYSF 101
           +AGD V +PK        +    + Y F
Sbjct: 106 EAGDFVVFPKGMSCTWDVSVAVDKHYQF 133
[Close]
BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT3G04300.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.400e-8
Identity = 28/88 (31.82%), Postives = 43/88 (48.86%), Query Frame = 1 

		  

Query: 13  IRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEGSKHYMSF 72
           I +E   S  RL++LGV  W  W     +    +   +  Y+ +G+V+V P+GS  ++ F
Sbjct: 3   IVIENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKGSSEFVEF 62

Query: 73  KAGDLVRYPKWFEADLWFNAFYQERYSF 101
            AGDLV  PK        + F  + Y F
Sbjct: 63  GAGDLVTIPKGLSCTWDVSLFIDKHYKF 90
[Close]
BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT4G10290.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 9.100e-8
Identity = 25/77 (32.47%), Postives = 44/77 (57.14%), Query Frame = 1 

		  

Query: 9  ELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEG--- 68
          E++ ++V R+ S  +L ELGV+ W  W++   + PW +   + +Y  EG+++V  E    
Sbjct: 16 EIHGVKVMRQTSDAKLAELGVTSWQLWESMPRKFPWKFKKTETMYFVEGKLKVKVEDHHK 75

Query: 69 SKHYMSFKAGDLVRYPK 83
              + F AGDLV +P+
Sbjct: 76 EGEALEFVAGDLVVFPQ 92
The following BLAST results are available for this feature:
BLAST of Spo23441.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902182919|gb|KNA10012.1|6.9e-58100.hypothetical protein SOVF_1483... [more]
gi|731366911|ref|XP_010695324.1|3.9e-5392.4PREDICTED: uncharacterized pro... [more]
gi|870844892|gb|KMS97754.1|3.9e-5392.4hypothetical protein BVRB_5g12... [more]
gi|661885047|emb|CDP11330.1|1.3e-4884.9unnamed protein product [Coffe... [more]
gi|657975610|ref|XP_008379657.1|6.5e-4884.9PREDICTED: uncharacterized pro... [more]
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BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QRT7_SPIOL4.8e-58100.Uncharacterized protein OS=Spi... [more]
A0A0J8B8X6_BETVU2.7e-5392.4Uncharacterized protein OS=Bet... [more]
A0A068US20_COFCA9.1e-4984.9Uncharacterized protein OS=Cof... [more]
M5WSX4_PRUPE1.0e-4785.8Uncharacterized protein OS=Pru... [more]
A0A059A0X3_EUCGR1.7e-4784.9Uncharacterized protein OS=Euc... [more]
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BLAST of Spo23441.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT2G32650.12.0e-4779.2RmlC-like cupins superfamily p... [more]
AT2G32180.12.0e-4779.2plastid transcriptionally acti... [more]
AT4G10300.18.2e-928.4RmlC-like cupins superfamily p... [more]
AT3G04300.11.4e-831.8RmlC-like cupins superfamily p... [more]
AT4G10290.19.1e-832.4RmlC-like cupins superfamily p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008579Domain of unknown function DUF861, cupin-3PFAMPF05899Cupin_3coord: 25..98
score: 9.6
IPR011051RmlC-like cupin domainunknownSSF51182RmlC-like cupinscoord: 19..86
score: 5.9
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 6..98
score: 7.1
NoneNo IPR availablePANTHERPTHR33271FAMILY NOT NAMEDcoord: 1..106
score: 1.1
NoneNo IPR availablePANTHERPTHR33271:SF7PLASTID TRANSCRIPTIONALLY ACTIVE 18coord: 1..106
score: 1.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0010028 xanthophyll cycle
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0042779 tRNA 3'-trailer cleavage
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0006412 translation
biological_process GO:0009657 plastid organization
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0044272 sulfur compound biosynthetic process
biological_process GO:0048481 plant ovule development
biological_process GO:0000096 sulfur amino acid metabolic process
biological_process GO:0009416 response to light stimulus
biological_process GO:0009408 response to heat
biological_process GO:0019216 regulation of lipid metabolic process
biological_process GO:0030154 cell differentiation
biological_process GO:0031408 oxylipin biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008652 cellular amino acid biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009072 aromatic amino acid family metabolic process
biological_process GO:0032774 RNA biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0042793 plastid transcription
biological_process GO:0051607 defense response to virus
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009451 RNA modification
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0015031 protein transport
biological_process GO:0000413 protein peptidyl-prolyl isomerization
biological_process GO:0006457 protein folding
biological_process GO:0016556 mRNA modification
biological_process GO:0000023 maltose metabolic process
biological_process GO:0030488 tRNA methylation
biological_process GO:0008654 phospholipid biosynthetic process
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006886 intracellular protein transport
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0006396 RNA processing
biological_process GO:0006449 regulation of translational termination
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0043488 regulation of mRNA stability
biological_process GO:0051083 'de novo' cotranslational protein folding
biological_process GO:0009637 response to blue light
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0051258 protein polymerization
biological_process GO:0007017 microtubule-based process
biological_process GO:0010020 chloroplast fission
biological_process GO:0051301 cell division
biological_process GO:0007049 cell cycle
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0009058 biosynthetic process
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0015979 photosynthesis
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0009987 cellular process
biological_process GO:0006897 endocytosis
biological_process GO:0008380 RNA splicing
biological_process GO:0006014 D-ribose metabolic process
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0033036 macromolecule localization
biological_process GO:0006418 tRNA aminoacylation for protein translation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0019748 secondary metabolic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0009106 lipoate metabolic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0006546 glycine catabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0009108 coenzyme biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0042545 cell wall modification
biological_process GO:0006950 response to stress
biological_process GO:0071702 organic substance transport
biological_process GO:0009658 chloroplast organization
biological_process GO:0046835 carbohydrate phosphorylation
biological_process GO:0044237 cellular metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006364 rRNA processing
biological_process GO:0006167 AMP biosynthetic process
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0006206 pyrimidine nucleobase metabolic process
cellular_component GO:0009295 nucleoid
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0018444 translation release factor complex
cellular_component GO:0005874 microtubule
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009536 plastid
cellular_component GO:0005730 nucleolus
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0009020 tRNA (guanosine-2'-O-)-methyltransferase activity
molecular_function GO:0004747 ribokinase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003755 peptidyl-prolyl cis-trans isomerase activity
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0004001 adenosine kinase activity
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0003747 translation release factor activity
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters
molecular_function GO:0005525 GTP binding
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0046422 violaxanthin de-epoxidase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0008146 sulfotransferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0015297 antiporter activity
molecular_function GO:0042802 identical protein binding
molecular_function GO:0043621 protein self-association
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003924 GTPase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo030270.77Barchart | Table
Spo019700.76Barchart | Table
Spo055100.75Barchart | Table
Spo085330.74Barchart | Table
Spo229990.74Barchart | Table
Spo215010.74Barchart | Table
Spo181110.74Barchart | Table
Spo025790.74Barchart | Table
Spo272910.74Barchart | Table
Spo143100.74Barchart | Table
Spo140130.74Barchart | Table
Spo028160.73Barchart | Table
Spo215310.73Barchart | Table
Spo036090.72Barchart | Table
Spo057330.72Barchart | Table
Spo208890.72Barchart | Table
Spo158410.72Barchart | Table
Spo020010.72Barchart | Table
Spo170810.71Barchart | Table
Spo210710.71Barchart | Table
Spo172880.71Barchart | Table
Spo173190.70Barchart | Table
Spo029640.70Barchart | Table
Spo062870.70Barchart | Table
Spo112210.70Barchart | Table
Spo266440.69Barchart | Table
Spo240540.69Barchart | Table
Spo178030.69Barchart | Table
Spo059690.69Barchart | Table
Spo030570.69Barchart | Table
Spo076040.69Barchart | Table
Spo085990.68Barchart | Table
Spo216090.68Barchart | Table
Spo009210.68Barchart | Table
Spo038350.68Barchart | Table
Spo088790.68Barchart | Table
Spo169040.68Barchart | Table
Spo189800.68Barchart | Table
Spo268570.68Barchart | Table
Spo022210.68Barchart | Table
Spo174900.68Barchart | Table
Spo018310.68Barchart | Table
Spo234400.68Barchart | Table
Spo026480.67Barchart | Table
Spo064880.67Barchart | Table
Spo089980.67Barchart | Table
Spo001780.67Barchart | Table
Spo119280.67Barchart | Table
Spo148570.67Barchart | Table
Spo001290.67Barchart | Table
Spo018280.67Barchart | Table
Spo005010.67Barchart | Table
Spo226660.67Barchart | Table
Spo003910.67Barchart | Table
Spo241530.67Barchart | Table
Spo267270.67Barchart | Table
Spo056070.67Barchart | Table
Spo238980.66Barchart | Table
Spo225430.66Barchart | Table
Spo051150.66Barchart | Table
Spo227150.66Barchart | Table
Spo132380.66Barchart | Table
Spo202950.66Barchart | Table
Spo102330.66Barchart | Table
Spo012010.66Barchart | Table
Spo231270.66Barchart | Table
Spo223260.66Barchart | Table
Spo105850.65Barchart | Table
Spo259130.65Barchart | Table
Spo097840.65Barchart | Table
Spo043770.65Barchart | Table
Spo180270.65Barchart | Table
Spo184780.65Barchart | Table
Spo167080.65Barchart | Table
Spo194010.65Barchart | Table