Spo23440 (gene)

Overview
NameSpo23440
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 24653936 .. 24654575 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCCATTCAACTTCAACCCTATTTCTTTCTTTCTTTTTTCATCCCTTTTTCTCAATTTCAAGGTTATCTCAATCTGAATTCCGGTATCAGTCAATTAATTAGGTAAATCATTCAATTTCTTTTATTTGCTCAACTCTTTCGATTTCAAATTTGTAAGATTTGGGCAATGATTTCAAATATTTTAGTAAAAATACTTTCGAACTAGCAATTCATCATAAATTGTTACTCATATTTTGTTGCTCAAATTGAGCAAACGCCATTACTAACCTGTGTTTATTTCATATGATTACGAACTGTTCGTGCACTCCAAGTGTTCGATAAAATGCCCCAATAAAATAAGTTTGCTATTACTGAATTAGTTTGTTCTATTGTCAAACTACTTTGGGATTGGAGTGATTCATACATTGAAATGGAGGAAGGGGGATCGTAAAATTTGCAAACCAAACACTATATTGACCCAAATAATTTTCCTTTAGGGGTTTAATTAAGTTTATATTGAGCTTAGTATGTTGTTGTGCAGGAAATTAAGGGAAAAGAAGCCGGGAACTATATCCAGTGATGGCCAGTGTTATTTGGTCACCAACATTTCACAGCTCTGTGATTCGAACCAACAAGTCAGAACTAAAACGGTGTGA

mRNA sequence

ATGTTTTCCATTCAACTTCAACCCTATTTCTTTCTTTCTTTTTTCATCCCTTTTTCTCAATTTCAAGGTTATCTCAATCTGAATTCCGGTATCAGTCAATTAATTAGGAAATTAAGGGAAAAGAAGCCGGGAACTATATCCAGTGATGGCCAGTGTTATTTGGTCACCAACATTTCACAGCTCTGTGATTCGAACCAACAAGTCAGAACTAAAACGGTGTGA

Coding sequence (CDS)

ATGTTTTCCATTCAACTTCAACCCTATTTCTTTCTTTCTTTTTTCATCCCTTTTTCTCAATTTCAAGGTTATCTCAATCTGAATTCCGGTATCAGTCAATTAATTAGGAAATTAAGGGAAAAGAAGCCGGGAACTATATCCAGTGATGGCCAGTGTTATTTGGTCACCAACATTTCACAGCTCTGTGATTCGAACCAACAAGTCAGAACTAAAACGGTGTGA

Protein sequence

MFSIQLQPYFFLSFFIPFSQFQGYLNLNSGISQLIRKLREKKPGTISSDGQCYLVTNISQLCDSNQQVRTKTV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23440.1Spo23440.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo23440.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23440.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23440.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23440.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0009157 deoxyribonucleoside monophosphate biosynthetic process
biological_process GO:0016070 RNA metabolic process
biological_process GO:0009657 plastid organization
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0009987 cellular process
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0009934 regulation of meristem structural organization
biological_process GO:0030488 tRNA methylation
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0008361 regulation of cell size
biological_process GO:0009956 radial pattern formation
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0010014 meristem initiation
biological_process GO:0009554 megasporogenesis
biological_process GO:0010305 leaf vascular tissue pattern formation
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0016556 mRNA modification
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0061025 membrane fusion
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016049 cell growth
biological_process GO:0002943 tRNA dihydrouridine synthesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0043269 regulation of ion transport
biological_process GO:1901679 nucleotide transmembrane transport
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0043069 negative regulation of programmed cell death
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0015802 basic amino acid transport
biological_process GO:0015696 ammonium transport
biological_process GO:0043090 amino acid import
biological_process GO:0006397 mRNA processing
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0045727 positive regulation of translation
biological_process GO:0031425 chloroplast RNA processing
biological_process GO:0009658 chloroplast organization
biological_process GO:0009926 auxin polar transport
biological_process GO:0010015 root morphogenesis
biological_process GO:0006952 defense response
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0080005 photosystem stoichiometry adjustment
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0051604 protein maturation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0001510 RNA methylation
biological_process GO:0032774 RNA biosynthetic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0010951 negative regulation of endopeptidase activity
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0003333 amino acid transmembrane transport
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0008380 RNA splicing
biological_process GO:0071702 organic substance transport
biological_process GO:0033036 macromolecule localization
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0009295 nucleoid
cellular_component GO:0005773 vacuole
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005840 ribosome
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0016607 nuclear speck
cellular_component GO:0005730 nucleolus
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0009536 plastid
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005634 nucleus
cellular_component GO:0009579 thylakoid
cellular_component GO:0031965 nuclear membrane
cellular_component GO:0044424 intracellular part
molecular_function GO:0004809 tRNA (guanine-N2-)-methyltransferase activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0019003 GDP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity
molecular_function GO:0015297 antiporter activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0016773 phosphotransferase activity, alcohol group as acceptor
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0019136 deoxynucleoside kinase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0015215 nucleotide transmembrane transporter activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0015171 amino acid transmembrane transporter activity
molecular_function GO:0016301 kinase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo019700.74Barchart | Table
Spo068020.73Barchart | Table
Spo022210.72Barchart | Table
Spo003910.71Barchart | Table
Spo215310.71Barchart | Table
Spo225430.71Barchart | Table
Spo046820.71Barchart | Table
Spo152750.71Barchart | Table
Spo119510.71Barchart | Table
Spo172910.70Barchart | Table
Spo085890.70Barchart | Table
Spo215010.70Barchart | Table
Spo030270.69Barchart | Table
Spo001780.69Barchart | Table
Spo225070.69Barchart | Table
Spo223260.69Barchart | Table
Spo028160.68Barchart | Table
Spo025790.68Barchart | Table
Spo031950.68Barchart | Table
Spo036090.68Barchart | Table
Spo085330.68Barchart | Table
Spo129590.68Barchart | Table
Spo140130.68Barchart | Table
Spo232830.68Barchart | Table
Spo234410.68Barchart | Table
Spo245900.68Barchart | Table
Spo256150.68Barchart | Table
Spo110730.67Barchart | Table
Spo258510.67Barchart | Table
Spo025130.67Barchart | Table
Spo005010.67Barchart | Table
Spo226660.67Barchart | Table
Spo227150.67Barchart | Table
Spo259490.67Barchart | Table
Spo232860.67Barchart | Table
Spo272910.67Barchart | Table
Spo071140.67Barchart | Table
Spo235800.67Barchart | Table
Spo056400.67Barchart | Table
Spo237670.66Barchart | Table
Spo173670.66Barchart | Table
Spo238980.66Barchart | Table
Spo272390.66Barchart | Table
Spo186460.66Barchart | Table
Spo189800.66Barchart | Table
Spo258260.66Barchart | Table
Spo168920.66Barchart | Table
Spo201550.66Barchart | Table
Spo067890.66Barchart | Table
Spo222010.66Barchart | Table
Spo041040.66Barchart | Table
Spo233840.66Barchart | Table
Spo132380.65Barchart | Table
Spo101360.65Barchart | Table
Spo175470.65Barchart | Table
Spo190260.65Barchart | Table
Spo271020.65Barchart | Table
Spo237100.65Barchart | Table
Spo106240.65Barchart | Table
Spo110150.65Barchart | Table
Spo105850.65Barchart | Table
Spo133890.65Barchart | Table