Spo23352 (gene)

Overview
NameSpo23352
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L35
Locationchr6 : 44840966 .. 44845921 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAAGGCAAAAGCCAGAACCAGCAAATTCAACCAAAAAACCATGAATAGGTTTTAGCAGTGAGGAAAGAGAAGAGTGTTCTGAAAATTGCAGGCAAAATTACACCAACAACGATGCAGAGATGGTGTTCCAAGCTTCGAGCTTTGGCTCTTCTTCCAACCACCACCACTACTACTACAATTAGAGCTTCATCATCTTCTTCTTCTCCTTCATTTTATCGCTTCTACTACCATCACTCTACCTCTAATTTTCAGCGCCCCTTTTCACCATTTTCGTCAATTTCTTCCCAATTAAACTCCCATTTCAATACCCCCGCTTCTCTGGCGCTTCCTACAAATGGGGTTTCCTTCTCTCTCCTTCCTCATCCTGTAAGTTTTGCTTTCATTGTTTTGTTGGGTTTAATTTGTGATTTAGATTGCTAATTCTAGGGAAGTTTATGAGTTTTTGATGTGGTTTTCTGAATGACAATGATTGGGGTTTTGGTGATTTAGGTTTAGGATTTTTTTCTGGGATGATTGGTTGTGAATGTGTAGAAATCGTATGAAATTTGATGTGTGTTGTATGTACATTTTTTAAGGTCCTTATGATTGATTTGTGTAAATGAATGTTGAACTTTTATATGGGGCTTTCTGGGTATTTATTATGTTTTCTTATTGATTGATGAGAATTTGATTTGTGTTTAATCAAGTATTTCATGTTATGTGGAGTATAGTATGCGCAAATGAGGAGCTTTTCGGCTAAATCAAAGGAGAAGAAATGGAAGAAGCTTACACCAGCCACTTCAAAGGTCAAGAAGATCAAAATTAAGGGCTATTCGTAGGTTAACCTTGTCCTGTGTTCTTTCTTGATTCCTTCCATTAGTGGGTGATGTGTTCTAGGTTATTGAAATGATTGGGTGTTCATGATTTGTCTTGATTAGGTCTTTCAAGAGAAGGTTCAAGACTTTGAATGACGGGACAATTAGGCGATGGAGGGAAGGCAAGCGGCATAATGCACATTTGAAGGTATGGGTGGTTTATTTTTCATTTTAGAGTAGAGGCACCAGTGTTACCTAATTCTCTAGTTACCTGCGAACCGCGAATTATAACATGAAAATGGTACAATTTTGGTCTAATTAGCAAATTACGTAGCGAATTAAGAATCCATACCCAATCTTATACTAGTGAATCAGGTAACATTGAGTAGAGCACTCGAGCTCGAGCTCGAGCTGCTAACATTAGCTTATATGCATAGAGAAATGAGGATGAGAAGGAATTTTTCTTCTTTTGGTTTGGTGGATAGAAATGCAATTAGTTGTCGTAGCCTTTTAGTCAAGACTTGGGTCCATTAACATTAGCTTATATGCATAGAGAAATGAGGATGAGAAGGAATTTTTCTTCTTTTGGTTTGGTGGATAGAAATGCAATTAGTTGTCGTAGCCTTTTAGTCAAGACTTGGGTCAATTTATCTTGGTGATGCAGTGTTTGGAGGTTGGTTTATGACTTCTTAAAGCTCAAAGACGATTCTAGATATTGCTAGCAGGCCTAGCACATAATGGAAATGCATACCGTAGGTTTCTTTCTTTCTATATAGCTGCTTTTTAGGGAGTTGTGGTGCTCTACTACTGTGTAGCCAAGCCTTTTTGCCAAGGGTTTAGGCTTTTCGTTTGAACTTGATATTTTGTGCGGATGGACAAAAAGTAGGGTTAGCCACAATGTGATGTACCCAAGAAAAACAAAGTTAGTGATACATTATGAAATAGTTAGCGTAAATATTAGCATAATCTTTTCATATTTAGCAAATGTATATTAGGCGTGATATTTTCCCCTTGTATAGCTAATTAGGTCCTATAATCTAGCCAGTTAGACAATACTCTTGTATATATTTACATTGATACATCAATACAAATTAGGACCTAAATATATACAAGAGAATTGTCTAACTGACAGCATAATTACAAGCTAGATTATAGGACCTAATTAGCTATACATGGGAAAGATATACCGCCTAATATACATTTGCTAAATATGAAAAGATTGTGCTAATATTTACGTTGACTATTTCATAGTCTATCAGTTAGGGGTTGGCGGAACAATCTTAGTGGTCATTTGGTTGATTGCTGAAGGTTGATCTTCCCAGGAAATTTATTTTCTAGCAATTGTAAACAACTTTTTGGTTAATTGCAGAAAGTAATACCTCCCATAGGAAGTTCATCTTACCTAGGGGGACTTGGTAAGCCACTTCTTCCAATTTTTGGGAAGTAGAACTTTCCAGGAATTGTGGTTTTGTCAACCAAACTACCCTCGACTTTCCACAACCTCTACTTTCTAAAAATGCATATATGTTGCAAAGGTGTGAATAATAGAGGGAGGAACGAAAAAAGTGAGAGATATGAAAAGGTGATTTTTTGTTAAAGCTCTGTCAATGCACTTACTGAAAGCAATGGACCACAATTATTTTATAAATTTGGTGAACGATTCATTAACCTTTAGGGTTAGCAATCCTCGTAAGAGAGGTAGAAAAGTGTTATAAATGCAATAGTTTGATTGCATCACTCTACACTATCGCATTTATGAACCTTCTCTGTTTCTCTCATGTGGGTTCTCAATGGTAAGGACCAAACAACATTTCCCAACTTTTCCCAAGCTTATTTTTATTGGATTCAAAGCATTTGGAAATTAAAGAAGAACTTTACGGTATAGCTTCTCTGAAGCTACCAGTTCGTTGTAAGTTGTAACTTCTTCCAATTAGGTAGCAAGACTTAGGGTATTTTTTTTTCTCAGTTCCTATTCCTTAAACCAAACAGCACGATTGCTGATTCCTCAACTCTCTATGTTATTCCCGTCTTTTTTATTCCAATCATCTAAAATACCAGGTAAGTTAGTTTTTTTTTCCCATTCTAATTCTAGTAGGTTCCCAACTCTTTATGCTTATATAGCATACAGCTAAATGGTGATTGTTTGCAATGTTGTTGACTTTTTGTGCTGTACCCCTTATCTTAGAGGTTCTAGAGTTTTGCTCAAAGGAAGAAGGTAACCTTGTTTGGTAATATTGTACGTCTGCTTTCACTAGATGTCACTAGCTAGGCACGGAGCCTATTTATGGTAAAGAGTAATATGAATTTCTAACCAGATACCCTCTTTTTCGGGGAAAACCGTAATGTGTATAGTTTACTAGTTTAATCTATAGGTGGAAAAATGTGTAGGTGAAGTTTCATGCCTTGTAACATCTAAAATTATACTGTTTATGTAAGATTCATGACGTTTTTCATCTTTGAATGCCTTTTTCGTTTGTCAATATTCATGATATGCCTTAATCTTTTACATTCCCAGTTCTGAACTCTCCCTTTTGTCCTTTTGCTCTTGATCTTTCTTCTCCTAAACTGGTATTTTGATTGACTGGACTACGGAAGCACATCTATGTGCCTTCTGTTACTCTTTAGGTTTTGTAAACTTCAGATTTGAGACACCATTTCTGCTGAATTTAGGCCTGGGGTCTGGGTGTTATGTTGCTCGTTCTTGTTTGTCTGTGCCATATATAACTACTACCTCCATTTCATAAAAAAAAATTACGGTTGCTATTTGCACAAATATTAAGACAAAAATGAGAAAGTTAGTTGAATATAATAAAAATATGGATAAAGTAAGAGAAATGTTTAAAAAGGTGGGTGGGTGTAAGAAAAAATGAATAAAGTAAGAGAAATCGAGTAGATTGTACTCCGTAAATATTATGGAGTAAGAATGGTAAGGTAGTAAATTTCCATGTCCATAAATAGAATAAAGCAAAGTATAAAGAACCTTATGAAACAAACTAAAACGGAAATTGTAAAAATCATTTTGAAACGGAGGTAGTATATAAGAGACCATGTCATGTTCTGTAAAAAAATCCCTTCTTATATGAATATTTGACCACACTTTTCTTACTATGTTTTCACTCTTCAAGTCTTCACCACATGTAATCACATCAACCATTTTTCTCATACAAGTTCAAGAAGTCCTCTTAGTGATTATTCTCTTTCTCGTTTGCAATTTAAGAAGTTGTTAATCCCTGTGCTCAAAACTAACAAGAAGATTATTTAGGATGAATAGACCAAGTACAAACATGCTCATCTAAAATGACACTACAAAAATTTGTATATTTTATGACAACCTAATAACGACGGGTAAAAATCCCGTCGTAAAAGGGCTTTTGCGACGGGGATAACAACCCAACAAAGACGGGAACAACCGTCGCAAATGTCTTTTACGACGGGTTAATGACGGGATTTTCCATTATCGACGGCCCCCTTTTATGACGGGTTCGCGGCGGAAAAATCCCGTCGTTAATCAACAATTATTGGCCTTTAGCGACGGGATTTCCCGTCGTTAATAGTACAATTCTTGTAGTGTGTTTTGGTATTTTTTATATCCTTTTCTGTCATTCACTGTTACCAATTCTGTGCTGAGTTGTTGCATGCCATTCTTAATAGTTATATGATTTGAACGATTAACAAAAACTTAAACGATTATGTTGCTTAATGCAGTCAAAGAAATCCAAGAGAAGGCTCAGAAAACCCGAGATTGTGCCAGCTGCTTATGCGAAAGTGATGAAGAAGCTCAACTTCTGTTCAAATTTCTGAAACAAACAAGAGGGAAAGAACGCGATGAATCTCTAGACAATTTGTTAATCACTGTTTTTTCCGGTGATGTAGTTCCTCTTCCCATTTCAGTATTGGGTTTAATGCGGAGTACAAATGTACAATGCTCTGATTCAAAGATCTGGTTAGCTACTACAAACATAAGATCTACTCCGTAGTTAATTTAGCTGCTCTAGTCCTTGATAACATTTGCCCTTGTTGCTATCAATTTATGTATGAACTAGATAGTTTTTTTTTACATAGAATCTTGAAAGTGTTTCCTTTGAAATGCAGATTACAGTTTCTAATAAGACCTATTATACATGTATCAGAAAAAAGTAAGAAAAAAAACATTTTCTGAG

mRNA sequence

CAAAAGGCAAAAGCCAGAACCAGCAAATTCAACCAAAAAACCATGAATAGGTTTTAGCAGTGAGGAAAGAGAAGAGTGTTCTGAAAATTGCAGGCAAAATTACACCAACAACGATGCAGAGATGGTGTTCCAAGCTTCGAGCTTTGGCTCTTCTTCCAACCACCACCACTACTACTACAATTAGAGCTTCATCATCTTCTTCTTCTCCTTCATTTTATCGCTTCTACTACCATCACTCTACCTCTAATTTTCAGCGCCCCTTTTCACCATTTTCGTCAATTTCTTCCCAATTAAACTCCCATTTCAATACCCCCGCTTCTCTGGCGCTTCCTACAAATGGGGTTTCCTTCTCTCTCCTTCCTCATCCTTATGCGCAAATGAGGAGCTTTTCGGCTAAATCAAAGGAGAAGAAATGGAAGAAGCTTACACCAGCCACTTCAAAGGTCAAGAAGATCAAAATTAAGGGCTATTCGTCTTTCAAGAGAAGGTTCAAGACTTTGAATGACGGGACAATTAGGCGATGGAGGGAAGGCAAGCGGCATAATGCACATTTGAAGTCAAAGAAATCCAAGAGAAGGCTCAGAAAACCCGAGATTGTGCCAGCTGCTTATGCGAAAGTGATGAAGAAGCTCAACTTCTGTTCAAATTTCTGAAACAAACAAGAGGGAAAGAACGCGATGAATCTCTAGACAATTTGTTAATCACTGTTTTTTCCGGTGATGTAGTTCCTCTTCCCATTTCAGTATTGGGTTTAATGCGGAGTACAAATGTACAATGCTCTGATTCAAAGATCTGGTTAGCTACTACAAACATAAGATCTACTCCGTAGTTAATTTAGCTGCTCTAGTCCTTGATAACATTTGCCCTTGTTGCTATCAATTTATGTATGAACTAGATAGTTTTTTTTTACATAGAATCTTGAAAGTGTTTCCTTTGAAATGCAGATTACAGTTTCTAATAAGACCTATTATACATGTATCAGAAAAAAGTAAGAAAAAAAACATTTTCTGAG

Coding sequence (CDS)

ATGCAGAGATGGTGTTCCAAGCTTCGAGCTTTGGCTCTTCTTCCAACCACCACCACTACTACTACAATTAGAGCTTCATCATCTTCTTCTTCTCCTTCATTTTATCGCTTCTACTACCATCACTCTACCTCTAATTTTCAGCGCCCCTTTTCACCATTTTCGTCAATTTCTTCCCAATTAAACTCCCATTTCAATACCCCCGCTTCTCTGGCGCTTCCTACAAATGGGGTTTCCTTCTCTCTCCTTCCTCATCCTTATGCGCAAATGAGGAGCTTTTCGGCTAAATCAAAGGAGAAGAAATGGAAGAAGCTTACACCAGCCACTTCAAAGGTCAAGAAGATCAAAATTAAGGGCTATTCGTCTTTCAAGAGAAGGTTCAAGACTTTGAATGACGGGACAATTAGGCGATGGAGGGAAGGCAAGCGGCATAATGCACATTTGAAGTCAAAGAAATCCAAGAGAAGGCTCAGAAAACCCGAGATTGTGCCAGCTGCTTATGCGAAAGTGATGAAGAAGCTCAACTTCTGTTCAAATTTCTGA

Protein sequence

MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQLNSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23352.1Spo23352.1mRNA


Homology
[Close]
BLAST of Spo23352.1 vs. NCBI nr
Match: gi|902237604|gb|KNA24854.1| (hypothetical protein SOVF_011680 [Spinacia oleracea])

HSP 1 Score: 344.4 bits (882), Expect = 1.200e-91
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL
Sbjct: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
           NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS
Sbjct: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF
Sbjct: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 179
[Close]
BLAST of Spo23352.1 vs. NCBI nr
Match: gi|731332822|ref|XP_010677411.1| (PREDICTED: uncharacterized protein LOC104893055 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 258.8 bits (660), Expect = 6.800e-66
Identity = 141/179 (78.77%), Postives = 151/179 (84.36%), Query Frame = 1 

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSK RA  LLPT+TTT       SSS PSF+RFY  HSTSNFQRP SPFSSISSQL
Sbjct: 1   MQRWCSKFRAFPLLPTSTTT-------SSSFPSFHRFY--HSTSNFQRPISPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
            SHFN P+ L +P NG S SL    YAQ+R+FSAKSKEKKWKKLTPA S+VKKIKIKGYS
Sbjct: 61  ISHFNAPSFLPIPRNGASVSLFAASYAQVRNFSAKSKEKKWKKLTPAVSRVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           S+K RF+TL+DGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVP AYAKVMKKLNFCSNF
Sbjct: 121 SYKGRFRTLSDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPLAYAKVMKKLNFCSNF 170
[Close]
BLAST of Spo23352.1 vs. NCBI nr
Match: gi|729308399|ref|XP_010529237.1| (PREDICTED: uncharacterized protein LOC104806179 [Tarenaya hassleriana])

HSP 1 Score: 152.1 bits (383), Expect = 9.000e-34
Identity = 96/185 (51.89%), Postives = 123/185 (66.49%), Query Frame = 1 

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPF--SSISS 60
           MQR+CSKLR+ A          ++++ + S  + +R   HHS   +++    F  S  S 
Sbjct: 1   MQRFCSKLRSFA----------VQSNQNLSFITAHRRLLHHSPPQYRQQTLGFARSKWSF 60

Query: 61  QLNSHFNTPAS---LALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKL----TPATSKV 120
              +H   P +     +    +  SLLP+ +AQ+R+ ++K ++ KWKK     TP TSKV
Sbjct: 61  VPAAHDGLPLANRVSPVAAGSMGSSLLPYHFAQVRNITSKERKAKWKKKWRPRTPVTSKV 120

Query: 121 KKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMK 177
           KKIKIKGYSS+K RFK LNDGTIRRWREGKRHNAHLKSKKSKRRLR+P +VPAAYAKVMK
Sbjct: 121 KKIKIKGYSSYKDRFKLLNDGTIRRWREGKRHNAHLKSKKSKRRLRQPALVPAAYAKVMK 175
[Close]
BLAST of Spo23352.1 vs. NCBI nr
Match: gi|18422571|ref|NP_568647.1| (ribosomal protein L35 [Arabidopsis thaliana])

HSP 1 Score: 144.1 bits (362), Expect = 2.400e-31
Identity = 94/187 (50.27%), Postives = 119/187 (63.64%), Query Frame = 1 

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFY----RFYYHHSTSNFQRPFSPFSSI 60
           MQR+C+KLR+++L              S+ + SFY        HHS S  +   +     
Sbjct: 1   MQRFCTKLRSISL-------------QSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGF 60

Query: 61  SSQLNSHFNTPASLALPTNGVSF--SLLPHPYAQMRSFSAKSKEKKWKKL----TPATSK 120
           ++     F  PA+   P+N  S   + +PH + Q+R+ ++K K  KWKK     TP TSK
Sbjct: 61  ANSTKWSF-VPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSK 120

Query: 121 VKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVM 178
           VKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVM
Sbjct: 121 VKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVM 173
[Close]
BLAST of Spo23352.1 vs. NCBI nr
Match: gi|727648225|ref|XP_010494672.1| (PREDICTED: uncharacterized protein LOC104771789 [Camelina sativa])

HSP 1 Score: 143.7 bits (361), Expect = 3.200e-31
Identity = 97/188 (51.60%), Postives = 118/188 (62.77%), Query Frame = 1 

		  

Query: 1   MQRWCSKLRALALLPTTT---TTTTIRASSSSSSPSFYRFYYHHSTSNFQRP----FSPF 60
           MQR+C+KLR+++L         T+  R    S SPS  R   H +T  F       F P 
Sbjct: 1   MQRFCTKLRSISLQSNRNLSFATSPHRLIHPSPSPSLCR---HLTTLGFANTTKWSFLPA 60

Query: 61  SSISSQLNSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKL----TPATS 120
           + +S  LN      +S+  P         PH + Q+R+ ++K K  KWKK     TP TS
Sbjct: 61  AGVSPPLNV-----SSMGSP-------FAPHHFVQVRTITSKEKMAKWKKKWRPRTPITS 120

Query: 121 KVKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKV 178
           KVKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKV
Sbjct: 121 KVKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKV 173
[Close]
BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0Z6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_011680 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 8.600e-92
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL
Sbjct: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
           NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS
Sbjct: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF
Sbjct: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 179
[Close]
BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CH22_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g107320 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.700e-66
Identity = 141/179 (78.77%), Postives = 151/179 (84.36%), Query Frame = 1 

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQRWCSK RA  LLPT+TTT       SSS PSF+RFY  HSTSNFQRP SPFSSISSQL
Sbjct: 1   MQRWCSKFRAFPLLPTSTTT-------SSSFPSFHRFY--HSTSNFQRPISPFSSISSQL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKGYS 120
            SHFN P+ L +P NG S SL    YAQ+R+FSAKSKEKKWKKLTPA S+VKKIKIKGYS
Sbjct: 61  ISHFNAPSFLPIPRNGASVSLFAASYAQVRNFSAKSKEKKWKKLTPAVSRVKKIKIKGYS 120

Query: 121 SFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFCSNF 180
           S+K RF+TL+DGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVP AYAKVMKKLNFCSNF
Sbjct: 121 SYKGRFRTLSDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPLAYAKVMKKLNFCSNF 170
[Close]
BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: Q8LAA7_ARATH (Putative uncharacterized protein At5g45590 OS=Arabidopsis thaliana GN=At5g45590 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.700e-31
Identity = 94/187 (50.27%), Postives = 119/187 (63.64%), Query Frame = 1 

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFY----RFYYHHSTSNFQRPFSPFSSI 60
           MQR+C+KLR+++L              S+ + SFY        HHS S  +   +     
Sbjct: 1   MQRFCTKLRSISL-------------QSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGF 60

Query: 61  SSQLNSHFNTPASLALPTNGVSF--SLLPHPYAQMRSFSAKSKEKKWKKL----TPATSK 120
           ++     F  PA+   P+N  S   + +PH + Q+R+ ++K K  KWKK     TP TSK
Sbjct: 61  ANSTKWSF-VPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSK 120

Query: 121 VKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVM 178
           VKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVM
Sbjct: 121 VKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVM 173
[Close]
BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: U5GMV7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01590g PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.800e-31
Identity = 92/178 (51.69%), Postives = 114/178 (64.04%), Query Frame = 1 

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQR C+KLR+LA + ++            SSP FY     H   +F    S +S   S L
Sbjct: 1   MQRLCTKLRSLASVSSSHRLL-------HSSPQFY-----HRPLHFAAASSKWSLNGSIL 60

Query: 61  NSHFNTPASLALPTNGVSFSLLP--HPYAQMRSFSAKSKEKKWKKLTPATSKVKKIKIKG 120
           N+  + P  L       SF L P  HP  Q+R  S++ ++K  K +TP TSKVKK K+K 
Sbjct: 61  NTSSSLPIQLPSLPFLPSFRLSPLSHPLVQVRHVSSRERKKNRKPMTPLTSKVKKFKMKA 120

Query: 121 YSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLNFC 177
           YSS+K RF+T+NDGTIRRWREGK HNAHLKSKKS+RRLR+P  VPAAYAKVMKKL+FC
Sbjct: 121 YSSYKDRFRTMNDGTIRRWREGKNHNAHLKSKKSRRRLRQPSTVPAAYAKVMKKLSFC 166
[Close]
BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Match: A0A0D3D9A2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.900e-31
Identity = 94/183 (51.37%), Postives = 114/183 (62.30%), Query Frame = 1 

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFYRFYYHHSTSNFQRPFSPFSSISSQL 60
           MQR C+KLR+++          +R++ + S         HHS +             SQL
Sbjct: 1   MQRLCTKLRSIS----------VRSNGNLSLIGAPHRLIHHSPT-------------SQL 60

Query: 61  NSHFNTPASL--ALPTNGVSFSLLPHPYAQMRSFSAKSKEKKWKKL----TPATSKVKKI 120
              F TP S    LP     F  +PH + Q+RS ++K K  KWKK     TP TSKVKK+
Sbjct: 61  TLGFATPPSKWSFLPAGASPF--VPHHFVQVRSITSKDKMAKWKKKWRPRTPITSKVKKV 120

Query: 121 KIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVMKKLN 178
           KIK YSS+K RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVMKKLN
Sbjct: 121 KIKFYSSYKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVMKKLN 158
[Close]
BLAST of Spo23352.1 vs. TAIR (Arabidopsis)
Match: AT5G45590.1 (Ribosomal protein L35)

HSP 1 Score: 144.1 bits (362), Expect = 8.600e-35
Identity = 94/187 (50.27%), Postives = 119/187 (63.64%), Query Frame = 1 

		  

Query: 1   MQRWCSKLRALALLPTTTTTTTIRASSSSSSPSFY----RFYYHHSTSNFQRPFSPFSSI 60
           MQR+C+KLR+++L              S+ + SFY        HHS S  +   +     
Sbjct: 1   MQRFCTKLRSISL-------------QSNRNLSFYGASPHRLIHHSPSPSRHLTTTTLGF 60

Query: 61  SSQLNSHFNTPASLALPTNGVSF--SLLPHPYAQMRSFSAKSKEKKWKKL----TPATSK 120
           ++     F  PA+   P+N  S   + +PH + Q+R+ ++K K  KWKK     TP TSK
Sbjct: 61  ANSTKWSF-VPAAGVFPSNVSSMGTTFVPHHFVQVRNITSKEKMAKWKKKWRPRTPITSK 120

Query: 121 VKKIKIKGYSSFKRRFKTLNDGTIRRWREGKRHNAHLKSKKSKRRLRKPEIVPAAYAKVM 178
           VKK+KIK YSSFK RFK LNDGTIRRW+EGKRHNAHLKSKKSKRRLR+P +VP AYAKVM
Sbjct: 121 VKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQPGLVPPAYAKVM 173
The following BLAST results are available for this feature:
BLAST of Spo23352.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902237604|gb|KNA24854.1|1.2e-91100.hypothetical protein SOVF_0116... [more]
gi|731332822|ref|XP_010677411.1|6.8e-6678.7PREDICTED: uncharacterized pro... [more]
gi|729308399|ref|XP_010529237.1|9.0e-3451.8PREDICTED: uncharacterized pro... [more]
gi|18422571|ref|NP_568647.1|2.4e-3150.2ribosomal protein L35 [Arabido... [more]
gi|727648225|ref|XP_010494672.1|3.2e-3151.6PREDICTED: uncharacterized pro... [more]
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BLAST of Spo23352.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S0Z6_SPIOL8.6e-92100.Uncharacterized protein OS=Spi... [more]
A0A0J8CH22_BETVU4.7e-6678.7Uncharacterized protein OS=Bet... [more]
Q8LAA7_ARATH1.7e-3150.2Putative uncharacterized prote... [more]
U5GMV7_POPTR3.8e-3151.6Uncharacterized protein OS=Pop... [more]
A0A0D3D9A2_BRAOL4.9e-3151.3Uncharacterized protein OS=Bra... [more]
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BLAST of Spo23352.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23352.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G45590.18.6e-3550.2Ribosomal protein L35[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 115..173
score: 2.0
NoneNo IPR availablePANTHERPTHR36400FAMILY NOT NAMEDcoord: 8..177
score: 6.6
NoneNo IPR availableunknownSSF143034L35p-likecoord: 114..173
score: 5.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0032259 methylation
biological_process GO:0006979 response to oxidative stress
biological_process GO:0030091 protein repair
biological_process GO:0006464 cellular protein modification process
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016310 phosphorylation
biological_process GO:0010024 phytochromobilin biosynthetic process
biological_process GO:0006788 heme oxidation
biological_process GO:0015994 chlorophyll metabolic process
biological_process GO:0032984 protein-containing complex disassembly
biological_process GO:0009658 chloroplast organization
biological_process GO:0035265 organ growth
biological_process GO:0006412 translation
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0015979 photosynthesis
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0030154 cell differentiation
biological_process GO:0071806 protein transmembrane transport
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0009306 protein secretion
biological_process GO:0009737 response to abscisic acid
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0006749 glutathione metabolic process
biological_process GO:0042631 cellular response to water deprivation
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0010189 vitamin E biosynthetic process
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0016926 protein desumoylation
biological_process GO:0034051 negative regulation of plant-type hypersensitive response
biological_process GO:0050665 hydrogen peroxide biosynthetic process
biological_process GO:0016487 farnesol metabolic process
biological_process GO:0048440 carpel development
biological_process GO:0009407 toxin catabolic process
biological_process GO:0009723 response to ethylene
biological_process GO:0006750 glutathione biosynthetic process
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0042793 plastid transcription
biological_process GO:0006605 protein targeting
biological_process GO:0006364 rRNA processing
biological_process GO:0042761 very long-chain fatty acid biosynthetic process
biological_process GO:0046520 sphingoid biosynthetic process
biological_process GO:0006223 uracil salvage
biological_process GO:0044206 UMP salvage
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0006508 proteolysis
biological_process GO:0032502 developmental process
biological_process GO:0008654 phospholipid biosynthetic process
biological_process GO:0009657 plastid organization
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0016556 mRNA modification
biological_process GO:0010207 photosystem II assembly
biological_process GO:0044237 cellular metabolic process
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0006397 mRNA processing
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0009790 embryo development
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0051788 response to misfolded protein
biological_process GO:0009853 photorespiration
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005622 intracellular
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0010007 magnesium chelatase complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009579 thylakoid
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005768 endosome
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0005829 cytosol
cellular_component GO:0016020 membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0009536 plastid
cellular_component GO:0009295 nucleoid
cellular_component GO:0005739 mitochondrion
molecular_function GO:0052669 CTP:2-trans,-6-trans-farnesol kinase activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0016851 magnesium chelatase activity
molecular_function GO:0046422 violaxanthin de-epoxidase activity
molecular_function GO:0005515 protein binding
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0052670 geraniol kinase activity
molecular_function GO:0052671 geranylgeraniol kinase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0097159 organic cyclic compound binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0008836 diaminopimelate decarboxylase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0004392 heme oxygenase (decyclizing) activity
molecular_function GO:0004845 uracil phosphoribosyltransferase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0005484 SNAP receptor activity
molecular_function GO:0008113 peptide-methionine (S)-S-oxide reductase activity
molecular_function GO:0045703 ketoreductase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0018454 acetoacetyl-CoA reductase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0047134 protein-disulfide reductase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0043295 glutathione binding
molecular_function GO:0004363 glutathione synthase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0004602 glutathione peroxidase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo269750.80Barchart | Table
Spo192880.76Barchart | Table
Spo002140.75Barchart | Table
Spo050780.75Barchart | Table
Spo200500.74Barchart | Table
Spo128750.73Barchart | Table
Spo079150.73Barchart | Table
Spo116880.73Barchart | Table
Spo258170.73Barchart | Table
Spo153890.72Barchart | Table
Spo149140.72Barchart | Table
Spo037850.72Barchart | Table
Spo232490.71Barchart | Table
Spo063620.71Barchart | Table
Spo014960.71Barchart | Table
Spo050840.70Barchart | Table
Spo229990.70Barchart | Table
Spo004050.70Barchart | Table
Spo075480.70Barchart | Table
Spo218080.69Barchart | Table
Spo257730.69Barchart | Table
Spo091490.69Barchart | Table
Spo266440.69Barchart | Table
Spo059420.69Barchart | Table
Spo088240.68Barchart | Table
Spo093840.68Barchart | Table
Spo094280.68Barchart | Table
Spo131800.68Barchart | Table
Spo153900.68Barchart | Table
Spo160050.68Barchart | Table
Spo240160.68Barchart | Table
Spo064990.67Barchart | Table
Spo119290.67Barchart | Table
Spo149380.67Barchart | Table
Spo266730.67Barchart | Table
Spo201060.67Barchart | Table
Spo031390.67Barchart | Table
Spo026480.67Barchart | Table
Spo240540.67Barchart | Table
Spo253950.67Barchart | Table
Spo023960.67Barchart | Table
Spo066370.67Barchart | Table
Spo019280.67Barchart | Table
Spo193410.66Barchart | Table
Spo043770.66Barchart | Table
Spo225300.66Barchart | Table
Spo233320.66Barchart | Table
Spo011010.66Barchart | Table
Spo135750.66Barchart | Table
Spo051250.66Barchart | Table
Spo257830.66Barchart | Table
Spo047090.66Barchart | Table
Spo063980.65Barchart | Table
Spo152660.65Barchart | Table
Spo009430.65Barchart | Table
Spo093870.65Barchart | Table
Spo110000.65Barchart | Table
Spo057330.65Barchart | Table
Spo030640.65Barchart | Table
Spo097690.65Barchart | Table
Spo270550.65Barchart | Table
Spo233820.65Barchart | Table