Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTGCTTCGTATTCAGCAACGACGATTAACAAAGTCCAAGCCGAAATTTCAGCGCTTTTCCTAAGCAATTCCATCTTCAACGAAAGCACAACCATTTCTTTCTGGGTTTTTTTTTGTGATTATCTGAACTAAATTCTTCATCAAATTGAGAAAATCAAATCAATAAAAGATGAGTGAGATTCAAATTGAAGAAAGCAGCAGCGATCCCACACTGGTTGAAATCCTTCTCAAAACAATCGGCCCTTCTCGCCCTTCTCGCCTTAAACTCCCTCCTCAAATTAAGGTAATCTAACTTACTTCTTTAATTATTTCTTAATCTTTTGTAATTTTTACATTTTTTGCATGATTTTGTTGAGAATTTGGGGGATAATTTTGGCATTTGCTTGTTTTTTTGAATTTACTCATTTGTTTGATAGAATTTGTTATTAATTATAAACCCTAGGTGCGTGATTTGAGAAAATTAGTTGCTGCAAATAAAAATTTACCAATTGAGAGTTTGAAGCTAATATCGCGAGGGAGTGCATTGCATGATAGCGAAAATGGAGAAGATGTTCGTGTTCAGCTTGCAGATGGTGGTATGATCTTATTCTGCAATTATTTTTAAGTTTTTTTCATGTAAATTTCGTCATTTTCAAATTGAATTATGTTACACTGGATATAATTGTTGATTTATTCCTAATTTGATAAAAATTTAAGTCAAAAAAGTATGGACTCCCATTTAATTTAGTGCATCATCGCCGCCACCATTCGTATATAAAGTTTTGGGGTGATCTCGTAAATTACTTTGAGTATGATGGACGGATGGCTGCAAATTTTATTTGTTTAGGAACTGGTTTATCAAAATCCTAGGCTTGTTACATATGTGATGATTAATTGAACATTAATGATTACTTAGAGAGATTCTGGGAAGTTTGAATAATGTTGTAGTGTAAACTTAACTAATTGGGGAAAATGAAGAGGATATATGGTTATTAAAATATCCAAGAGCTATTGGCCAAGCAGGATGTGTACAATTTTTGGAGGAATCTTTAGGTCTGGAAGAGCTTTGGAAGAGTGATCGAGATTATGATGCCCTTAAAGTTATTTGCTTAAACTCTTCATGGATCCAGCACATCAGGTTATACCTTTATTTAGGATCTTATATTAAGAAAGTGTGGGGAAGAGAAAATGAGGGGTTCATCTTCCCTTGTTTGCATAATATATTCCATGGAAAACATTTTTCAAGGAAAAACACAATTCCAAACTAGTTTTCCTTTGTTTGGTTCCTTCAAGGAAAAATGGTAGAAGATGGTGAAGATTGAGGGGAAGAAGGGAAAGGGAGGTAAGGAGGAAAGATGGAAAAGTGGTTTCCTCCCTTTCAAATGGAAAAGGTTTTTCCACCTTTTGGGGAGTCATGGAAAATTGTTTTTCATTCCTTGTCAAACCAAACAACGTAAAATGATTGAAAGGGGGAAAATCGTTTTCCATGAAAACGTTTTACACCCTACCAAACGGAGCCTTAGGGATACATTTTCCTCTATTGGACTCTCAACATATTATATATTTCGCTTATGGTAGATACTTGAAAAGACATGGAAGTAAGTAGCTTACTCCTTTATATTATAATGTTGATTTTCTCCTGTGAAGTGATCACTGTAGTTTCTTACAAAGGCTCTTTCAAGGACCGTCCTAAACTCCTAACTCTTAAGACATAGATAATTTCTTGTTTATAGGTTCTGTTTTGAGAACTCTGTGATATGCAGATCCTTGTTAATGTTGGCTAGCTTTTACAAGATAGGCATTCGATTATTGGGAGTGAAAAAGTACCCTAGCCTCTACAAGATAATCAGATAAAGATGAATATCATGCCCGTGCATGACACACCACTGTATACTTCACCACCCTCTACCCCACCCCTCGGAAAAAAAATTAAATAGTTAATTCAAAGTCTGGTCAAGATTTGTTACTTTTAACATTCTAGAAGGTGCTGCTTGTAACGAACGGTGTAGTTATAGAGATTTTAACATTTTTGTCTTTAAGGTGATGTCATAGACTATGTTTGCCTTTTGCCTGTTTATGCACCATCAATATTGATATGAACTTATGAAGTGCTATGCATCATGTTTCAGATTGCTTGATTGTAGCAGTCAGACCGAAGGCACCACCGAAGCATCTTAGAGCTGGATATGATGAGGATGAGGATGACGATGAAGATGATTTGGTCTGATTACGATAAGTTTTTCAACTTGACTCCTTCAATTTAGTAAGATGGCTTCTCACTTTGCATCCCCATGCCTTTTCTTCTTGTTCGTTAATGGAATGCAGAAGTTCCAGCTCCCAGAATCAACAAGTCGATTGAAGTGGAAGCTATATCGTATTTTACATGATAAGCTGAAACTTCCTGGTGAGTAATTTAGTTGAATACTATATTAAGATTTTTAACTTACGCTAAATATGTGCTGATTTTCACTTAATTCTTTATTTGTAGATATCATTTTGATCGCAATTTTCTCTCTCAGCTTAAAGGCGTGGGCCTTGATAATCCTATGGTTTATCTTGGCTCCTGTTGCACATCGATGGGATCTGGGACCATTATATGTAAGTTAAATAGGTCACCATTCTACGAGCCTATGTCCCTGCTATGTGTGTGTAGTCTTGTTACATGTACTGTGGGCATGTGGCGTTGCATGGGGTACATGTATGGTTTGAGATTGGTCGCGGTTTTTCTGTTGCTTGGTTGCTGCGATCAATAGTGTTGTCAGAATGAGTTTGGTTGGCATACGTTAAAATTCTTTTTACTGGGTTCGTTTAAATAAAATATTTCTAGGCCTAACTGTCATTGGACTCTCAACCTTTGCTAGATTGAGATCAAACAGATGACAAATGCAACCTGACTTTTGTTGTTTCAAACACCAAAGATTGATAGTTCAAACACGATAATATTCAGTCTCTCTTATGCTTGCTATTATTTAGATTATTATAAGGGAAATAATAAGATCAACTTCATCTGTTGGCTCATGGAAGAATTCCCATTTGTTAAATATTCAAGACTTCACATCATGCAATAACAAAAAATAGTGCTTGTCCTTTTTCAGCTATTTTACAACTGATTATGGTTCATGATAGCAATTACTTGGATGCATCTATTTTAGGTTCTAAGCTTTACTTTTGTTAATCATGTTATTTGATCTTATTGATCCCGAAGCAAATGACAGAAAATATGTAGTTTGTAGATTAGATAGATTATTTATTTTGATAGTGCCAACAAAAGTCAAATCCCCATCAGCTTGAGAAATGACTGTAAGATCAAAGGAAGAGAGCTAGAACTTCCTGTTTTAAGATTCTTTCTTCTAATGTAGGACACTAGGACTCGAATTCTTTTGCCAGGTCAGGAGTTGCAGGTATATCTGAAGACTAAACGAACAAAAAAAATGACCGAGTAGGTGTAGACGTGTAGTCTAATGGAAGAATTCGAACATATAACTGAACGGACAAAAAAATGACAAAAAGTAGGTGTAGTCTAGCGGAAGAATTCGAACATATAAGGAGGGATGACTTAATCATTCAGATTTGGGGGATTATTCATAGATGAGAATTGATATGCAGCTATAATATTCAATCGGCCTGCTGGTTGGCTAGTTTAGAATTGGATGGACCTATTATCTATCAAGATAGGGTAAGTGGTCTGGAGTGCTAAGTCTAATTAATTGGAATTTCTGTTTTATGATTATTTTTGCTTCTATTTGTGGTTTTTTTACTGTTTTCCTTTCCTTTTCCTGCTAGTAATCCTTTCTAGTAGTGATATCGAAGCAATTAAAAATTCCTTTGTCCACATCACATTGGTTTGATACTATCCTTAACTAGTGAACTTTCCCCATTTGTTCAGATACTTGGAACAGGATTTTTTATCATCTTTTGGAATCTTGGAAATCGTCAATCAGGTGAACTCAGGTAAGACCTGACAAAGGCGTTGTTGATGTCTTTATTTTGTTATCTCCTAGTATTGCCAGTCTTTCCAAATTCAAAAACCATGCAATTTACGTTATCCCTTTTTCCCAACTTACCACGATTAATATGCATTAACTTCAGTTCCCTGCTTAGTTAAGGACTTGGTGTATACAGGAATGATAAAAGTGTATCCCAGGGATTTTAATCCCCCTTACATGTTTGGCCTCTAGTTTTCCCTTCTATGATTTTCATCTCTATTGTCCATCAATGAACTTGAACCAGACGTAGCTTGAATTTGTGGGACTTCAATGCAATTAGCCAATTAGGCCAGAAGTGTTTCTTTCAAGATTATTATGCTGTCAGCTTGTGTCAGAGAATTCCTCCCACATGTCGGGAATACACTCTGCCAAGTTTTTTTTTTTTTTTTGATAAGGAAAGAAAACCCAAGCGGACTACCTGAAATCATCCTTTCGGATGAATTACAATGACTCCGAGAAAATTAGAAAAGGGATAAAGAGAACAATTAAACCTACGCTGAAACCTCATACTATCCCAGCCCCAATTCCAAGAAAACTTGGTGAATAGACTTTAAAGATAGACGATTAGCCGAACGGTATATAATAACGCCCCATCCTCCGAAAGAAACCAAAACCCGAAGCCTGACTCTAACCAACTACAACAACAACAACAACTAGCTAACATTGCCAAGTTGGTTATTGTACATGATTGTCACTCTAATGCTGATTGTTAATGTTGATATGCAGTGCATATTCAATCTTCAATGAGGACTTCAGAGAACTTCCGGGAACTCTTAACGCAGAACGCTTGGACAGAGACCTACGAACAGGTCAGCTTTAATGTGATGGTACAAACGCATTATAATGTATCTGCAGGATACCTGAAGAAAATATGTAAGCACAATTTTTGTGATAGATTAGGTTCTCATGATCTGTAAGCACAAACTCCTCTTGAATACGCCGTGTGTATATGCTGAAATTATGACTGAAGTTGTCAATACAGTTTTGGTCATGGAAAAGTTACTGTAAAGTTTCTCACCATAATTGTTCTGGTACTCCTTATTGTTACTGTCTCCTCTCTCCATTCCTTATGATGTGTACTAAGAATTTGCTTGAAGATATATGTGTGTTTAAACCTGACTAATAGGAAGTAATAATCTGTGTTGTAAATTGTAAAATGGCGAGTAATATTACATTGATATTGTAGGGTGAGTTCATAATACGGCATAAATGAAGTATGAGGGTAGATATTACTCCGTATGATTTATGCTTTTGTTCATTTTACCTATACCGGCAATGGTAACTATTGTAGTAACTATTATGATCTCATTTGTTCCCCAGAAAATTGTCTGGAATTCTTTAAAAAAAAGTGGC GTGCTTCGTATTCAGCAACGACGATTAACAAAGTCCAAGCCGAAATTTCAGCGCTTTTCCTAAGCAATTCCATCTTCAACGAAAGCACAACCATTTCTTTCTGGGTTTTTTTTTGTGATTATCTGAACTAAATTCTTCATCAAATTGAGAAAATCAAATCAATAAAAGATGAGTGAGATTCAAATTGAAGAAAGCAGCAGCGATCCCACACTGGTTGAAATCCTTCTCAAAACAATCGGCCCTTCTCGCCCTTCTCGCCTTAAACTCCCTCCTCAAATTAAGGTGCGTGATTTGAGAAAATTAGTTGCTGCAAATAAAAATTTACCAATTGAGAGTTTGAAGCTAATATCGCGAGGGAGTGCATTGCATGATAGCGAAAATGGAGAAGATGTTCGTGTTCAGCTTGCAGATGGTGATTGCTTGATTGTAGCAGTCAGACCGAAGGCACCACCGAAGCATCTTAGAGCTGGATATGATGAGGATGAGGATGACGATGAAGATGATTTGAAGTTCCAGCTCCCAGAATCAACAAGTCGATTGAAGTGGAAGCTATATCGTATTTTACATGATAAGCTGAAACTTCCTGATATCATTTTGATCGCAATTTTCTCTCTCAGCTTAAAGGCGTGGGCCTTGATAATCCTATGGTTTATCTTGGCTCCTGTTGCACATCGATGGGATCTGGGACCATTATATATACTTGGAACAGGATTTTTTATCATCTTTTGGAATCTTGGAAATCGTCAATCAGGTGAACTCAGTGCATATTCAATCTTCAATGAGGACTTCAGAGAACTTCCGGGAACTCTTAACGCAGAACGCTTGGACAGAGACCTACGAACAGGTCAGCTTTAATGTGATGGTACAAACGCATTATAATGTATCTGCAGGATACCTGAAGAAAATATGTAAGCACAATTTTTGTGATAGATTAGGTTCTCATGATCTGTAAGCACAAACTCCTCTTGAATACGCCGTGTGTATATGCTGAAATTATGACTGAAGTTGTCAATACAGTTTTGGTCATGGAAAAGTTACTGTAAAGTTTCTCACCATAATTGTTCTGGTACTCCTTATTGTTACTGTCTCCTCTCTCCATTCCTTATGATGTGTACTAAGAATTTGCTTGAAGATATATGTGTGTTTAAACCTGACTAATAGGAAGTAATAATCTGTGTTGTAAATTGTAAAATGGCGAGTAATATTACATTGATATTGTAGGGTGAGTTCATAATACGGCATAAATGAAGTATGAGGGTAGATATTACTCCGTATGATTTATGCTTTTGTTCATTTTACCTATACCGGCAATGGTAACTATTGTAGTAACTATTATGATCTCATTTGTTCCCCAGAAAATTGTCTGGAATTCTTTAAAAAAAAGTGGC ATGAGTGAGATTCAAATTGAAGAAAGCAGCAGCGATCCCACACTGGTTGAAATCCTTCTCAAAACAATCGGCCCTTCTCGCCCTTCTCGCCTTAAACTCCCTCCTCAAATTAAGGTGCGTGATTTGAGAAAATTAGTTGCTGCAAATAAAAATTTACCAATTGAGAGTTTGAAGCTAATATCGCGAGGGAGTGCATTGCATGATAGCGAAAATGGAGAAGATGTTCGTGTTCAGCTTGCAGATGGTGATTGCTTGATTGTAGCAGTCAGACCGAAGGCACCACCGAAGCATCTTAGAGCTGGATATGATGAGGATGAGGATGACGATGAAGATGATTTGAAGTTCCAGCTCCCAGAATCAACAAGTCGATTGAAGTGGAAGCTATATCGTATTTTACATGATAAGCTGAAACTTCCTGATATCATTTTGATCGCAATTTTCTCTCTCAGCTTAAAGGCGTGGGCCTTGATAATCCTATGGTTTATCTTGGCTCCTGTTGCACATCGATGGGATCTGGGACCATTATATATACTTGGAACAGGATTTTTTATCATCTTTTGGAATCTTGGAAATCGTCAATCAGGTGAACTCAGTGCATATTCAATCTTCAATGAGGACTTCAGAGAACTTCCGGGAACTCTTAACGCAGAACGCTTGGACAGAGACCTACGAACAGGTCAGCTTTAA MSEIQIEESSSDPTLVEILLKTIGPSRPSRLKLPPQIKVRDLRKLVAANKNLPIESLKLISRGSALHDSENGEDVRVQLADGDCLIVAVRPKAPPKHLRAGYDEDEDDDEDDLKFQLPESTSRLKWKLYRILHDKLKLPDIILIAIFSLSLKAWALIILWFILAPVAHRWDLGPLYILGTGFFIIFWNLGNRQSGELSAYSIFNEDFRELPGTLNAERLDRDLRTGQL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo23318.1 vs. NCBI nr
Match: gi|902186681|gb|KNA10761.1| (hypothetical protein SOVF_141360 [Spinacia oleracea]) HSP 1 Score: 447.6 bits (1150), Expect = 1.300e-122 Identity = 227/228 (99.56%), Postives = 227/228 (99.56%), Query Frame = 1
BLAST of Spo23318.1 vs. NCBI nr
Match: gi|731332575|ref|XP_010677278.1| (PREDICTED: uncharacterized protein LOC104892950 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 357.8 bits (917), Expect = 1.400e-95 Identity = 183/226 (80.97%), Postives = 208/226 (92.04%), Query Frame = 1
BLAST of Spo23318.1 vs. NCBI nr
Match: gi|764590674|ref|XP_011465170.1| (PREDICTED: uncharacterized protein LOC101314569 isoform X2 [Fragaria vesca subsp. vesca]) HSP 1 Score: 308.5 bits (789), Expect = 9.500e-81 Identity = 152/213 (71.36%), Postives = 183/213 (85.92%), Query Frame = 1
BLAST of Spo23318.1 vs. NCBI nr
Match: gi|802673341|ref|XP_012081589.1| (PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]) HSP 1 Score: 307.4 bits (786), Expect = 2.100e-80 Identity = 155/224 (69.20%), Postives = 183/224 (81.70%), Query Frame = 1
BLAST of Spo23318.1 vs. NCBI nr
Match: gi|470128670|ref|XP_004300259.1| (PREDICTED: uncharacterized protein LOC101314569 isoform X1 [Fragaria vesca subsp. vesca]) HSP 1 Score: 305.8 bits (782), Expect = 6.200e-80 Identity = 151/211 (71.56%), Postives = 181/211 (85.78%), Query Frame = 1
BLAST of Spo23318.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QW78_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_141360 PE=4 SV=1) HSP 1 Score: 447.6 bits (1150), Expect = 9.200e-123 Identity = 227/228 (99.56%), Postives = 227/228 (99.56%), Query Frame = 1
BLAST of Spo23318.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F6X3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g106370 PE=4 SV=1) HSP 1 Score: 357.8 bits (917), Expect = 9.500e-96 Identity = 183/226 (80.97%), Postives = 208/226 (92.04%), Query Frame = 1
BLAST of Spo23318.1 vs. UniProtKB/TrEMBL
Match: A0A067K112_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19318 PE=4 SV=1) HSP 1 Score: 307.4 bits (786), Expect = 1.500e-80 Identity = 155/224 (69.20%), Postives = 183/224 (81.70%), Query Frame = 1
BLAST of Spo23318.1 vs. UniProtKB/TrEMBL
Match: F6HTA3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01110 PE=4 SV=1) HSP 1 Score: 304.7 bits (779), Expect = 9.600e-80 Identity = 156/221 (70.59%), Postives = 185/221 (83.71%), Query Frame = 1
BLAST of Spo23318.1 vs. UniProtKB/TrEMBL
Match: B9N2Q0_POPTR (Ubiquitin family protein OS=Populus trichocarpa GN=POPTR_0003s08770g PE=4 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 8.100e-79 Identity = 153/213 (71.83%), Postives = 179/213 (84.04%), Query Frame = 1
BLAST of Spo23318.1 vs. TAIR (Arabidopsis)
Match: AT2G35360.1 (ubiquitin family protein) HSP 1 Score: 263.8 bits (673), Expect = 9.500e-71 Identity = 136/225 (60.44%), Postives = 167/225 (74.22%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23318.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo23318.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo23318.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo23318.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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