Spo23291 (gene)

Overview
NameSpo23291
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 43957004 .. 43957231 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCCATCAAAACTCTCTTGTGAAGCTCCATTAGTTCACGAATGGAAGAGGGTGATAATCGGAGATGAATTCAAGCATGAAGCAACAACAATGGTGTCTTCCATGGTAAGAGATACAGAAGATCGTGTTCCTTGTTCATCTTCTGCAAGAAGAAAATTAAACACACATAATAATGAAGATACAATTCGAGTTATTATGTTTTTAGGACCTTGGAGTCACACTTAA

mRNA sequence

ATGAAGCCATCAAAACTCTCTTGTGAAGCTCCATTAGTTCACGAATGGAAGAGGGTGATAATCGGAGATGAATTCAAGCATGAAGCAACAACAATGGTGTCTTCCATGGTAAGAGATACAGAAGATCGTGTTCCTTGTTCATCTTCTGCAAGAAGAAAATTAAACACACATAATAATGAAGATACAATTCGAGTTATTATGTTTTTAGGACCTTGGAGTCACACTTAA

Coding sequence (CDS)

ATGAAGCCATCAAAACTCTCTTGTGAAGCTCCATTAGTTCACGAATGGAAGAGGGTGATAATCGGAGATGAATTCAAGCATGAAGCAACAACAATGGTGTCTTCCATGGTAAGAGATACAGAAGATCGTGTTCCTTGTTCATCTTCTGCAAGAAGAAAATTAAACACACATAATAATGAAGATACAATTCGAGTTATTATGTTTTTAGGACCTTGGAGTCACACTTAA

Protein sequence

MKPSKLSCEAPLVHEWKRVIIGDEFKHEATTMVSSMVRDTEDRVPCSSSARRKLNTHNNEDTIRVIMFLGPWSHT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23291.1Spo23291.1mRNA


Homology
[Close]
BLAST of Spo23291.1 vs. NCBI nr
Match: gi|902197375|gb|KNA13407.1| (hypothetical protein SOVF_117280 [Spinacia oleracea])

HSP 1 Score: 159.8 bits (403), Expect = 1.800e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

		  

Query: 1  MKPSKLSCEAPLVHEWKRVIIGDEFKHEATTMVSSMVRDTEDRVPCSSSARRKLNTHNNE 60
          MKPSKLSCEAPLVHEWKRVIIGDEFKHEATTMVSSMVRDTEDRVPCSSSARRKLNTHNNE
Sbjct: 1  MKPSKLSCEAPLVHEWKRVIIGDEFKHEATTMVSSMVRDTEDRVPCSSSARRKLNTHNNE 60

Query: 61 DTIRVIMFLGPWSHT 76
          DTIRVIMFLGPWSHT
Sbjct: 61 DTIRVIMFLGPWSHT 75
[Close]
BLAST of Spo23291.1 vs. NCBI nr
Match: gi|870844693|gb|KMS97608.1| (hypothetical protein BVRB_5g125770 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 112.8 bits (281), Expect = 2.500e-22
Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = 1 

		  

Query: 1  MKPSKLSCEAPLVHEWKRVIIGDEFKHEATTMVSSMVRDTEDR---VPCSSSARRKLNTH 60
          MKPSK SC+APLVHEWKRVI GDE KH     + SMVRDTED    VP SSSARRKLN +
Sbjct: 1  MKPSKFSCDAPLVHEWKRVI-GDELKHVHEAAMVSMVRDTEDIKHCVPPSSSARRKLNMY 60

Query: 61 NNEDTIRVIMFLGPWSHT 76
          NNED +RVIMFLGPWSHT
Sbjct: 61 NNEDPLRVIMFLGPWSHT 77
[Close]
BLAST of Spo23291.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3L8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_117280 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.300e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

		  

Query: 1  MKPSKLSCEAPLVHEWKRVIIGDEFKHEATTMVSSMVRDTEDRVPCSSSARRKLNTHNNE 60
          MKPSKLSCEAPLVHEWKRVIIGDEFKHEATTMVSSMVRDTEDRVPCSSSARRKLNTHNNE
Sbjct: 1  MKPSKLSCEAPLVHEWKRVIIGDEFKHEATTMVSSMVRDTEDRVPCSSSARRKLNTHNNE 60

Query: 61 DTIRVIMFLGPWSHT 76
          DTIRVIMFLGPWSHT
Sbjct: 61 DTIRVIMFLGPWSHT 75
[Close]
BLAST of Spo23291.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BC35_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g125770 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.800e-22
Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = 1 

		  

Query: 1  MKPSKLSCEAPLVHEWKRVIIGDEFKHEATTMVSSMVRDTEDR---VPCSSSARRKLNTH 60
          MKPSK SC+APLVHEWKRVI GDE KH     + SMVRDTED    VP SSSARRKLN +
Sbjct: 1  MKPSKFSCDAPLVHEWKRVI-GDELKHVHEAAMVSMVRDTEDIKHCVPPSSSARRKLNMY 60

Query: 61 NNEDTIRVIMFLGPWSHT 76
          NNED +RVIMFLGPWSHT
Sbjct: 61 NNEDPLRVIMFLGPWSHT 77
The following BLAST results are available for this feature:
BLAST of Spo23291.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902197375|gb|KNA13407.1|1.8e-36100.hypothetical protein SOVF_1172... [more]
gi|870844693|gb|KMS97608.1|2.5e-2274.3hypothetical protein BVRB_5g12... [more]
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BLAST of Spo23291.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9R3L8_SPIOL1.3e-36100.Uncharacterized protein OS=Spi... [more]
A0A0J8BC35_BETVU1.8e-2274.3Uncharacterized protein OS=Bet... [more]
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BLAST of Spo23291.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23291.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009790 embryo development
biological_process GO:0071805 potassium ion transmembrane transport
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0080168 abscisic acid transport
biological_process GO:0008152 metabolic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0055085 transmembrane transport
biological_process GO:0006396 RNA processing
biological_process GO:0009755 hormone-mediated signaling pathway
cellular_component GO:0008076 voltage-gated potassium channel complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0004000 adenosine deaminase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005249 voltage-gated potassium channel activity
RNA-Seq Expression