Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGACAAGCAAAAAGGAACAGATATAGCATTAATTAGCTCTAGTAATCTTAGCTAGGTGTATAAAAACTAGGTCAAATTGTTAAATGCCCTACAGTTTAGTGGCATAGCTTTCAACTTTCAGGAAGAAAATCTTAGTTCAAAATTAAGAGAAAACCCTTTCACTTTCACATGGCAACATTCCTTCCCATACTCCTCCCCATCCTCCTCCTCTCCCTCGCCACCGCCTCCCACTCCTCCACACTAAACTCCTTCGTCTACGGCGGCTGCTCCCAACTCAAGTACGCCTCCGACGATGTCGCCTACACTTCAAACCTCAACTCCCTCCTCACCTCCCTAGTCAACTCAGCCACCTACATGTCCTACAACCATTTCGCCATCGCTGGCACCGCCCCACACGACGTCGTCTACGGCCTCTACCAATGCCGAGGCGACCTCTCCATGCCGGACTGCGCCACCTGCGTAGCCACCTCGGTGAGTCGACTCGGAGCCCTATGCCCCGGGTCATGCGGCGGGGTCCTCCAGCTACAAGGGTGCTACGTAAAGTACGACAACGACACGTTCATCGGGGTTGAGGATAAGACGGTAGTGAATAAGAAATGTGGGCAATCTACGGGGTATCAGGATAAGATTGCGAACCGTGACGCGGTGTTGGACGGGGTGGTGGCTAGCGGCGGAGGGATTTTCCGAGCAGGCGGTTCGAAAGACGTAGCGGTGATCGCACAATGTGTAGGGGACTTGGATGGAGGGGAGTGTCAAGATTGTTTGAAAGAAAGTGTTGAGCAAGTGAAGATGAATTGTGGAACGAGTGGTAATGGTGATATGTATTTGGGGAAGTGTTACGTGAGGTATACGATTGGTGGTGGTCGTGGATATTTCAACTCTAATGGTAATTATAATAATAATGGTAAGTTCAATTCTAAACAAATTACAATCTAGTCACTTTAGACATTATGTTAGGCATAGTTCTCTTATCTGATCTGGTCTAATTGTTTTATGTGAGTGTTTTTCTACTTTTCCGGTCTAATTTGGTCTAGTCTAATTTAATTTTTTTCGTCTGGTCTAATAAACAATAAAATTAAGGTGATGAAGAGAACAAAAGTTGGTCAAATCTTCATCACAATTCACAAAGACAAGTTACAGGAATGTGTTACATAATATATAGAGTAGGTTTTTTGTCATACGGTTTGATCAAATATTTTGGTTAGACCAATTAGCCTTTTACCTGCTTTTTCTTTGACTAATGCATGTTCTCTATGACTTCTAATTAACAAATAAGAATTAAGTTGGCTAATCGTCTGTTATAAGAATTTGCCTAAATTATAACCTACTTCATGCTTCACACACTAGTGTCTTGGATCGTTAAGTTTAGTCTTGAGATTAAATTGTTGTAGTGACATTTCATGCATGTTAGTTGCATTATAATGTAGGTCAAACAAGTTTTAGGAATATACTCCAACTCTCTTTCTACATTAAAAATACATCGAATTGAAGTAATACATAATTTGTAACCTAATTAACGCGAGTACACTTCTATCCCGCAATTTATATGTCATTTGTGTGTCACTTCCTTCTGTTAGTAGTACGAAGTAATACTTCGTACGGAGTATTTCGTATTATTTAATGTTATGTTTAGAGTCTAGAATCTAGATTAAATTCATGTGGTGACTAATGACAAGGATCCATATCATTTTTACATTACTAAATATTAGTTTTGACGCACTAATTTAATCTTAATTTGTTTTGTTTGTTGTAGGGTCGGACAAAAATAGAGGAGTGAAGAATTTTGCACTAGTAATCGGTTTATTAGCTGCAATTGTGATCGTCATCATATTTCTAACTTTCCTTTGCCGAGCCTTTGCTGGAAGCAGTAAGCTATCATCGATCATATCATATTCCCTTATAATTTCCTTTACTACCTTTGTCCGCTCGAGTTTAGTTGTCATATTTCTGAAGATGACCGGGCCGGGCTTCGGACTGAGCCCATGGGCCATGGGCCTAACTGGGGCGGGCCCACGTTGTATTGGGCCAGACCGAAAAGTTCAAAACATGGCCCAGGCTCGGCCCGAGCCTACGTACTTTTGTATTGGACCGGGCCGGGCCATCGTGCATACCTAAGGCTAATTTTACTAAATTTAGCGTGCTTTATCTTGTCGTGCTTTTTCCAAAAAAATCAAGGCCCATGCCCGGCCCACGATTTTGTGCCCATGCCGGGCCGGGCTTTATTCGTGTCGGGTCGACACGGCCCATAACCATCTTTACATATTTCTAATTCAAATTACACTGTTAACGTGACAACTAATTGTTTTCGGACAAAAGTAGTACAAATGTTATTTCATTTCATATCCATATAATACTAATCATACTTATTTCTTTTTTGAGGGAACTAATCATACTTATTTCTGTTTTGCAGGTAAATAAAATGGTTTTCTCTTAATAAAATGACATTATTGTTATTATTATTATTAATCTACCTTTTTATTGCCTTTTTACTAAATATTATAGATAAATTAATTAAATATTGTATTATTTGATTAAGCAAAGCTTTTTGTAAAGGAAGAAAGCAAAAGATGAAGGAGCAGAGTGTGTATTCTGCATATTCATGCAAAAGGAAAGAGGAATCCCACAAACTTAATTCACTTTTGTCAAAGCTTTAAATTTTTAGTAACAAAGTTGTATTGTCTGATGTTAAGATATGCCCACATGCATTGCTTAAAGTTGCATGGACCTAATCTTTTTGCTACTTCTCTTTTATGCATTGGATTCCCAGATTCTACTTCTTTAAACTACTTACAGCAACATTAGCGCTAGTTTTAAGACGTGGTTTCATTGAGTATTAAGATAAAACATTTCATTTAAGTGGTTACGTATGACAAAAGTCTG AGACAAGCAAAAAGGAACAGATATAGCATTAATTAGCTCTAGTAATCTTAGCTAGGTGTATAAAAACTAGGTCAAATTGTTAAATGCCCTACAGTTTAGTGGCATAGCTTTCAACTTTCAGGAAGAAAATCTTAGTTCAAAATTAAGAGAAAACCCTTTCACTTTCACATGGCAACATTCCTTCCCATACTCCTCCCCATCCTCCTCCTCTCCCTCGCCACCGCCTCCCACTCCTCCACACTAAACTCCTTCGTCTACGGCGGCTGCTCCCAACTCAAGTACGCCTCCGACGATGTCGCCTACACTTCAAACCTCAACTCCCTCCTCACCTCCCTAGTCAACTCAGCCACCTACATGTCCTACAACCATTTCGCCATCGCTGGCACCGCCCCACACGACGTCGTCTACGGCCTCTACCAATGCCGAGGCGACCTCTCCATGCCGGACTGCGCCACCTGCGTAGCCACCTCGGTGAGTCGACTCGGAGCCCTATGCCCCGGGTCATGCGGCGGGGTCCTCCAGCTACAAGGGTGCTACGTAAAGTACGACAACGACACGTTCATCGGGGTTGAGGATAAGACGGTAGTGAATAAGAAATGTGGGCAATCTACGGGGTATCAGGATAAGATTGCGAACCGTGACGCGGTGTTGGACGGGGTGGTGGCTAGCGGCGGAGGGATTTTCCGAGCAGGCGGTTCGAAAGACGTAGCGGTGATCGCACAATGTGTAGGGGACTTGGATGGAGGGGAGTGTCAAGATTGTTTGAAAGAAAGTGTTGAGCAAGTGAAGATGAATTGTGGAACGAGTGGTAATGGTGATATGTATTTGGGGAAGTGTTACGTGAGGTATACGATTGGTGGTGGTCGTGGATATTTCAACTCTAATGGTAATTATAATAATAATGGGTCGGACAAAAATAGAGGAGTGAAGAATTTTGCACTAGTAATCGGTTTATTAGCTGCAATTGTGATCGTCATCATATTTCTAACTTTCCTTTGCCGAGCCTTTGCTGGAAGCAGTAAATAAAATGGTTTTCTCTTAATAAAATGACATTATTGTTATTATTATTATTAATCTACCTTTTTATTGCCTTTTTACTAAATATTATAGATAAATTAATTAAATATTGTATTATTTGATTAAGCAAAGCTTTTTGTAAAGGAAGAAAGCAAAAGATGAAGGAGCAGAGTGTGTATTCTGCATATTCATGCAAAAGGAAAGAGGAATCCCACAAACTTAATTCACTTTTGTCAAAGCTTTAAATTTTTAGTAACAAAGTTGTATTGTCTGATGTTAAGATATGCCCACATGCATTGCTTAAAGTTGCATGGACCTAATCTTTTTGCTACTTCTCTTTTATGCATTGGATTCCCAGATTCTACTTCTTTAAACTACTTACAGCAACATTAGCGCTAGTTTTAAGACGTGGTTTCATTGAGTATTAAGATAAAACATTTCATTTAAGTGGTTACGTATGACAAAAGTCTG ATGGCAACATTCCTTCCCATACTCCTCCCCATCCTCCTCCTCTCCCTCGCCACCGCCTCCCACTCCTCCACACTAAACTCCTTCGTCTACGGCGGCTGCTCCCAACTCAAGTACGCCTCCGACGATGTCGCCTACACTTCAAACCTCAACTCCCTCCTCACCTCCCTAGTCAACTCAGCCACCTACATGTCCTACAACCATTTCGCCATCGCTGGCACCGCCCCACACGACGTCGTCTACGGCCTCTACCAATGCCGAGGCGACCTCTCCATGCCGGACTGCGCCACCTGCGTAGCCACCTCGGTGAGTCGACTCGGAGCCCTATGCCCCGGGTCATGCGGCGGGGTCCTCCAGCTACAAGGGTGCTACGTAAAGTACGACAACGACACGTTCATCGGGGTTGAGGATAAGACGGTAGTGAATAAGAAATGTGGGCAATCTACGGGGTATCAGGATAAGATTGCGAACCGTGACGCGGTGTTGGACGGGGTGGTGGCTAGCGGCGGAGGGATTTTCCGAGCAGGCGGTTCGAAAGACGTAGCGGTGATCGCACAATGTGTAGGGGACTTGGATGGAGGGGAGTGTCAAGATTGTTTGAAAGAAAGTGTTGAGCAAGTGAAGATGAATTGTGGAACGAGTGGTAATGGTGATATGTATTTGGGGAAGTGTTACGTGAGGTATACGATTGGTGGTGGTCGTGGATATTTCAACTCTAATGGTAATTATAATAATAATGGGTCGGACAAAAATAGAGGAGTGAAGAATTTTGCACTAGTAATCGGTTTATTAGCTGCAATTGTGATCGTCATCATATTTCTAACTTTCCTTTGCCGAGCCTTTGCTGGAAGCAGTAAATAA MATFLPILLPILLLSLATASHSSTLNSFVYGGCSQLKYASDDVAYTSNLNSLLTSLVNSATYMSYNHFAIAGTAPHDVVYGLYQCRGDLSMPDCATCVATSVSRLGALCPGSCGGVLQLQGCYVKYDNDTFIGVEDKTVVNKKCGQSTGYQDKIANRDAVLDGVVASGGGIFRAGGSKDVAVIAQCVGDLDGGECQDCLKESVEQVKMNCGTSGNGDMYLGKCYVRYTIGGGRGYFNSNGNYNNNGSDKNRGVKNFALVIGLLAAIVIVIIFLTFLCRAFAGSSK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo23136.1 vs. NCBI nr
Match: gi|902170571|gb|KNA07855.1| (hypothetical protein SOVF_167960 [Spinacia oleracea]) HSP 1 Score: 545.0 bits (1403), Expect = 7.600e-152 Identity = 279/285 (97.89%), Postives = 279/285 (97.89%), Query Frame = 1
BLAST of Spo23136.1 vs. NCBI nr
Match: gi|731359534|ref|XP_010691336.1| (PREDICTED: cysteine-rich repeat secretory protein 60 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 456.1 bits (1172), Expect = 4.600e-125 Identity = 234/287 (81.53%), Postives = 255/287 (88.85%), Query Frame = 1
BLAST of Spo23136.1 vs. NCBI nr
Match: gi|731359532|ref|XP_010691335.1| (PREDICTED: cysteine-rich repeat secretory protein 60 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 452.2 bits (1162), Expect = 6.700e-124 Identity = 232/285 (81.40%), Postives = 253/285 (88.77%), Query Frame = 1
BLAST of Spo23136.1 vs. NCBI nr
Match: gi|255580365|ref|XP_002531010.1| (PREDICTED: cysteine-rich repeat secretory protein 60 [Ricinus communis]) HSP 1 Score: 319.3 bits (817), Expect = 6.700e-84 Identity = 167/283 (59.01%), Postives = 210/283 (74.20%), Query Frame = 1
BLAST of Spo23136.1 vs. NCBI nr
Match: gi|743916424|ref|XP_011002188.1| (PREDICTED: cysteine-rich repeat secretory protein 60 [Populus euphratica]) HSP 1 Score: 316.2 bits (809), Expect = 5.700e-83 Identity = 168/278 (60.43%), Postives = 204/278 (73.38%), Query Frame = 1
BLAST of Spo23136.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKR4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_167960 PE=4 SV=1) HSP 1 Score: 545.0 bits (1403), Expect = 5.300e-152 Identity = 279/285 (97.89%), Postives = 279/285 (97.89%), Query Frame = 1
BLAST of Spo23136.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BL97_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g220950 PE=4 SV=1) HSP 1 Score: 456.1 bits (1172), Expect = 3.200e-125 Identity = 234/287 (81.53%), Postives = 255/287 (88.85%), Query Frame = 1
BLAST of Spo23136.1 vs. UniProtKB/TrEMBL
Match: B9SYE1_RICCO (DUF26 domain-containing protein 1, putative OS=Ricinus communis GN=RCOM_0059770 PE=4 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 4.700e-84 Identity = 167/283 (59.01%), Postives = 210/283 (74.20%), Query Frame = 1
BLAST of Spo23136.1 vs. UniProtKB/TrEMBL
Match: B9H3B4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s08440g PE=4 SV=2) HSP 1 Score: 313.5 bits (802), Expect = 2.600e-82 Identity = 164/276 (59.42%), Postives = 203/276 (73.55%), Query Frame = 1
BLAST of Spo23136.1 vs. UniProtKB/TrEMBL
Match: F6HSG7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g00250 PE=4 SV=1) HSP 1 Score: 312.4 bits (799), Expect = 5.700e-82 Identity = 164/283 (57.95%), Postives = 210/283 (74.20%), Query Frame = 1
BLAST of Spo23136.1 vs. ExPASy Swiss-Prot
Match: CRR60_ARATH (Cysteine-rich repeat secretory protein 60 OS=Arabidopsis thaliana GN=CRRSP60 PE=1 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 8.800e-76 Identity = 154/259 (59.46%), Postives = 190/259 (73.36%), Query Frame = 1
BLAST of Spo23136.1 vs. ExPASy Swiss-Prot
Match: CRR12_ARATH (Cysteine-rich repeat secretory protein 12 OS=Arabidopsis thaliana GN=CRRSP12 PE=1 SV=2) HSP 1 Score: 245.7 bits (626), Expect = 5.900e-64 Identity = 133/277 (48.01%), Postives = 187/277 (67.51%), Query Frame = 1
BLAST of Spo23136.1 vs. ExPASy Swiss-Prot
Match: CRRS2_ARATH (Cysteine-rich repeat secretory protein 2 OS=Arabidopsis thaliana GN=CRRSP2 PE=1 SV=1) HSP 1 Score: 199.5 bits (506), Expect = 4.900e-50 Identity = 104/268 (38.81%), Postives = 166/268 (61.94%), Query Frame = 1
BLAST of Spo23136.1 vs. ExPASy Swiss-Prot
Match: CRR15_ARATH (Cysteine-rich repeat secretory protein 15 OS=Arabidopsis thaliana GN=CRRSP15 PE=1 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 2.800e-37 Identity = 98/281 (34.88%), Postives = 166/281 (59.07%), Query Frame = 1
BLAST of Spo23136.1 vs. ExPASy Swiss-Prot
Match: CRR11_ARATH (Cysteine-rich repeat secretory protein 11 OS=Arabidopsis thaliana GN=CRRSP11 PE=1 SV=2) HSP 1 Score: 115.2 bits (287), Expect = 1.200e-24 Identity = 81/286 (28.32%), Postives = 145/286 (50.70%), Query Frame = 1
BLAST of Spo23136.1 vs. TAIR (Arabidopsis)
Match: AT5G37660.2 (plasmodesmata-located protein 7) HSP 1 Score: 285.0 bits (728), Expect = 5.000e-77 Identity = 154/259 (59.46%), Postives = 190/259 (73.36%), Query Frame = 1
BLAST of Spo23136.1 vs. TAIR (Arabidopsis)
Match: AT2G01660.1 (plasmodesmata-located protein 6) HSP 1 Score: 245.7 bits (626), Expect = 3.300e-65 Identity = 133/277 (48.01%), Postives = 187/277 (67.51%), Query Frame = 1
BLAST of Spo23136.1 vs. TAIR (Arabidopsis)
Match: AT1G70690.1 (Receptor-like protein kinase-related family protein) HSP 1 Score: 199.5 bits (506), Expect = 2.700e-51 Identity = 104/268 (38.81%), Postives = 166/268 (61.94%), Query Frame = 1
BLAST of Spo23136.1 vs. TAIR (Arabidopsis)
Match: AT3G60720.1 (plasmodesmata-located protein 8) HSP 1 Score: 157.1 bits (396), Expect = 1.600e-38 Identity = 98/281 (34.88%), Postives = 166/281 (59.07%), Query Frame = 1
BLAST of Spo23136.1 vs. TAIR (Arabidopsis)
Match: AT2G33330.1 (plasmodesmata-located protein 3) HSP 1 Score: 115.2 bits (287), Expect = 6.800e-26 Identity = 81/286 (28.32%), Postives = 145/286 (50.70%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23136.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo23136.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo23136.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo23136.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|